charite.christo.strap.extensions
Class SecondaryStructure_Sopma

java.lang.Object
  charite.christo.protein.AbstractPredictionFromAminoacidSequence
      charite.christo.strap.extensions.SecondaryStructure_Sopma

All Implemented Interfaces:

Disposable, HasControlPanel, HasSharedControlPanel, NeedsInternet, NeedsSharedInstance, PredictionFromAminoacidSequence, SecondaryStructure_Predictor

public class SecondaryStructure_Sopma
extends AbstractPredictionFromAminoacidSequence
implements SecondaryStructure_Predictor, HasControlPanel, HasSharedControlPanel, NeedsInternet

HELP Authors: C Geourjon and G Deleage.
Web site: http://npsa-pbil.ibcp.fr/cgi-bin/npsa_automat.pl?page=npsa_sopma.html
Publication: PUBMED:8808585 PUBMED:10694887

Field Summary

Fields inherited from interface charite.christo.Disposable

NONE

Constructor Summary

SecondaryStructure_Sopma()

Method Summary

char[]	compute(java.lang.String sequ)
javax.swing.JComponent	getSharedControlPanel()

Methods inherited from class charite.christo.protein.AbstractPredictionFromAminoacidSequence

compute, countResults, dispose, findUrlInText, getControlPanel, getPrediction, getResultText, getSharedInstance, getUrlOfResult, serverRoot, setGappedSequences, setSharedInstance

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface charite.christo.protein.PredictionFromAminoacidSequence

compute, getPrediction, setGappedSequences

Methods inherited from interface charite.christo.HasControlPanel

getControlPanel

Methods inherited from interface charite.christo.NeedsSharedInstance

getSharedInstance, setSharedInstance

Constructor Detail

SecondaryStructure_Sopma

public SecondaryStructure_Sopma()

Method Detail

getSharedControlPanel

public javax.swing.JComponent getSharedControlPanel()

Specified by:

getSharedControlPanel in interface HasSharedControlPanel

compute

public char[] compute(java.lang.String sequ)

Specified by:

compute in class AbstractPredictionFromAminoacidSequence