charite.christo.strap.extensions
Class SequenceDisSimilarityAsAligned

java.lang.Object
  charite.christo.strap.AbstractAlignAndCompare
      charite.christo.strap.extensions.SequenceDisSimilarityAsAligned

All Implemented Interfaces:

Disposable, HasControlPanel, HasModiCount, HasSharedControlPanel, NeedsSharedInstance, HasProtein, StrapListener, ValueOfProtein, ProteinProteinDistance, ProteinProteinValue

public class SequenceDisSimilarityAsAligned
extends AbstractAlignAndCompare
implements ProteinProteinDistance

HELP This class calculates the ratio of identical residues of two aligned proteins.

Field Summary

Fields inherited from interface charite.christo.Disposable

NONE

Constructor Summary

SequenceDisSimilarityAsAligned()

Method Summary

Methods inherited from class charite.christo.strap.AbstractAlignAndCompare

comboClass, compute, dispose, getCalculator, getControlPanel, getOtherClass, getOtherProtein, getProtein, getSharedControlPanel, getSharedInstance, getValue, handleEvent, modificationCount, setColumnRange, setOtherClass, setOtherProtein, setProtein, setSharedInstance

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface charite.christo.strap.ProteinProteinValue

compute, getOtherProtein, getValue, setColumnRange, setOtherProtein

Methods inherited from interface charite.christo.protein.ValueOfProtein

setProtein

Methods inherited from interface charite.christo.protein.HasProtein

getProtein

Methods inherited from interface charite.christo.HasModiCount

modificationCount

Constructor Detail

SequenceDisSimilarityAsAligned

public SequenceDisSimilarityAsAligned()