charite.christo.strap.extensions
Class Superimpose_Goede

java.lang.Object
  charite.christo.strap.extensions.Superimpose_Goede

All Implemented Interfaces:

NeedsProteins, Superimpose3D

public class Superimpose_Goede
extends java.lang.Object
implements Superimpose3D

Nested Class Summary

Nested classes/interfaces inherited from interface charite.christo.protein.Superimpose3D

Superimpose3D.Result

Field Summary

Fields inherited from interface charite.christo.protein.Superimpose3D

COLUMN_SEQUENCE, NO_BYTE, PARSE_ALIGNMENT, PARSE_MATRIX, PARSE_MSA_START_S, PARSE_SCORE, PRINT_HUMAN_READABLE

Constructor Summary

Superimpose_Goede()

Method Summary

void	compute()
long	getOptions()
Protein[]	getProteins()
Superimpose3D.Result	getResult() returns a 3X3 rotation matrix and a translation vector.
void	setOptions(long optionFlags)
void	setProteins(Protein... pp)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Superimpose_Goede

public Superimpose_Goede()

Method Detail

setProteins

public void setProteins(Protein... pp)

Specified by:

setProteins in interface NeedsProteins

getProteins

public Protein[] getProteins()

Specified by:

getProteins in interface Superimpose3D

Returns:

the reference and the mobile protein

getResult

public Superimpose3D.Result getResult()

Description copied from interface: Superimpose3D

returns a 3X3 rotation matrix and a translation vector. returns a {dx,dy,dz} translation vector This method is invoked by STRAP after the compute() method returned.

Specified by:

getResult in interface Superimpose3D

compute

public void compute()

Specified by:

compute in interface Superimpose3D

setOptions

public void setOptions(long optionFlags)

Specified by:

setOptions in interface Superimpose3D

getOptions

public long getOptions()

Specified by:

getOptions in interface Superimpose3D