charite.christo.strap.extensions
Class Superimpose_LajollaRNA

java.lang.Object
  charite.christo.AbstractProxy
      charite.christo.strap.AbstractAlignerProxy
          charite.christo.strap.extensions.Superimpose_LajollaProteinPROXY
              charite.christo.strap.extensions.Superimpose_LajollaRNA

All Implemented Interfaces:

HasPropertyMap, NeedsProteins, Superimpose3D

public class Superimpose_LajollaRNA
extends Superimpose_LajollaProteinPROXY

HELP Home: http://lajolla.sf.net

Written in Java by Raphael Bauer

Nested Class Summary

Nested classes/interfaces inherited from interface charite.christo.protein.Superimpose3D

Superimpose3D.Result

Field Summary

Fields inherited from class charite.christo.AbstractProxy

ACTIVATION, ADAPTERS_JAR, BIOJAVA_3D, COMMONS_COLLECTIONS, GLUGEN, JCOMMON, JOGL, LOG4J, PFX_INSTALLED, TRY_BOOT_CLASSLOADER

Fields inherited from interface charite.christo.protein.Superimpose3D

COLUMN_SEQUENCE, NO_BYTE, PARSE_ALIGNMENT, PARSE_MATRIX, PARSE_MSA_START_S, PARSE_SCORE, PRINT_HUMAN_READABLE

Constructor Summary

Superimpose_LajollaRNA()

Method Summary

Methods inherited from class charite.christo.strap.extensions.Superimpose_LajollaProteinPROXY

getRequiredJars

Methods inherited from class charite.christo.strap.AbstractAlignerProxy

compute, getAlignedSequences, getOptions, getProteins, getResult, getSequences, setOptions, setProteins, setSequences

Methods inherited from class charite.christo.AbstractProxy

dispose, disposeProxy, getControlPanel, getPrgParas, getPropertyMap, getProxy, getScore, getSharedControlPanel, getSharedInstance, interpret, jarFile, jarsContainingNativeLibraries, proxyObject, proxyObjectRun, remoteURLs, setOptions, setSharedInstance, usrShareJava

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface charite.christo.protein.Superimpose3D

compute, getOptions, getProteins, getResult, setOptions

Methods inherited from interface charite.christo.protein.NeedsProteins

setProteins

Constructor Detail

Superimpose_LajollaRNA

public Superimpose_LajollaRNA()