charite.christo.strap.extensions
Class Toppred

java.lang.Object
  charite.christo.BasicExecutable
      charite.christo.strap.extensions.Toppred

All Implemented Interfaces:

CanBeStopped, ChRunnable, Disposable, HasControlPanel, HasPrgParas, NeedsSharedInstance

public class Toppred
extends BasicExecutable
implements HasPrgParas

Field Summary

Fields inherited from class charite.christo.BasicExecutable

DEFAULT_BINARY, PFX_ADD_INCLUDE_LIMITS, PFX_DPKG, PFX_FIX_INCLUDE, REPLACEME_INLCUDE_STRING, RPLC_WIN_DOT_EXE

Fields inherited from interface charite.christo.HasPrgParas

FURTHER_PARAMETERS

Fields inherited from interface charite.christo.CanBeStopped

vALIGNMENTS

Fields inherited from interface charite.christo.Disposable

NONE

Fields inherited from interface charite.christo.ChRunnable

APPEND, COLUMN_TITLE, DOWNLOAD_FINISHED, GET_PANEL, ICON, INTERPRET_LINE, IS_DRAG4XY, ITEM_TEXT, MODIFY_RENDERER_COMPONENT, PROGRESS, REPAINT_CURSOR, SAY_DOWNLOADING, SET_ICON_IMAGE, SET_TREE_VALUE, SHOW_IN_FRAME, TAB_TEXT, TIP_TEXT

Constructor Summary

Toppred()

Method Summary

void	compute()
double[]	getHydrophobicity()
char[]	getTM_Helices()
void	setSequence(java.lang.String name, java.lang.String s)

Methods inherited from class charite.christo.BasicExecutable

checkForUpdates, defineParameters, dirBinaries, dirTemp, dispose, exec, exec, failedToLaunch, fileExecutable, fileIn, fileOut, getControlPanel, getName, getPrgParas, getSharedInstance, init, initExecutable, installBioPerl, installPackage, isBioPerlInstalled, isPerlInstalled, isStopped, msgInstallCompilers, perlCommand, run, setBinaryPackageURLs, setFileExecutable, setName, setSharedInstance, setSourceInstallationScript, setSourcePackageURLs, stop, toString

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface charite.christo.HasPrgParas

defineParameters, getPrgParas

Methods inherited from interface charite.christo.NeedsSharedInstance

getSharedInstance, setSharedInstance

Constructor Detail

Toppred

public Toppred()

Method Detail

setSequence

public void setSequence(java.lang.String name,
                        java.lang.String s)

getTM_Helices

public char[] getTM_Helices()

getHydrophobicity

public double[] getHydrophobicity()

compute

public void compute()