Hierarchy For Package charite.christo.strap.extensions

Package Hierarchies:

All Packages

Class Hierarchy

• java.lang.Object
  • charite.christo.strap.AbstractAlignAndCompare (implements charite.christo.Disposable, charite.christo.HasControlPanel, charite.christo.HasModiCount, charite.christo.HasSharedControlPanel, charite.christo.strap.ProteinProteinValue, charite.christo.protein.StrapListener)
    • charite.christo.strap.extensions.AlignmentScore (implements charite.christo.strap.ProteinProteinSimilarity)
    • charite.christo.strap.extensions.IndividualSequenceDisSimilarity (implements charite.christo.strap.ProteinProteinDistance)
    • charite.christo.strap.extensions.RmsdValue (implements charite.christo.IsEnabled, charite.christo.strap.ProteinProteinDistance)
    • charite.christo.strap.extensions.SequenceDisSimilarityAsAligned (implements charite.christo.strap.ProteinProteinDistance)
  • charite.christo.strap.AbstractAligner (implements charite.christo.CanBeStopped, charite.christo.Disposable, charite.christo.HasControlPanel, charite.christo.HasNativeExec, charite.christo.HasPropertyMap, charite.christo.IsEnabled)
    • charite.christo.strap.extensions.Aligner3D_Mapsci (implements charite.christo.HasControlPanel, charite.christo.protein.SequenceAligner3D)
    • charite.christo.strap.extensions.Aligner3D_Matt (implements charite.christo.protein.SequenceAligner3D)
    • charite.christo.strap.extensions.Aligner3D_Mustang (implements charite.christo.protein.SequenceAligner3D)
    • charite.christo.strap.extensions.Aligner3D_Smolign (implements charite.christo.protein.SequenceAligner3D)
    • charite.christo.strap.extensions.MultipleAligner_SPEM (implements charite.christo.protein.SequenceAligner)
    • charite.christo.strap.extensions.MultipleAlignerAlign_m (implements charite.christo.HasPrgParas, charite.christo.protein.SequenceAligner)
    • charite.christo.strap.extensions.MultipleAlignerAmap (implements charite.christo.HasPrgParas, charite.christo.protein.SequenceAlignerSorting)
    • charite.christo.strap.extensions.MultipleAlignerClustalW (implements charite.christo.HasPrgParas, charite.christo.HasScore, charite.christo.protein.SequenceAlignerSorting, charite.christo.protein.SequenceAlignerTakesProfile)
    • charite.christo.strap.extensions.MultipleAlignerDialign (implements charite.christo.HasPrgParas, charite.christo.protein.SequenceAligner)
    • charite.christo.strap.extensions.MultipleAlignerDialignT (implements charite.christo.HasPrgParas, charite.christo.protein.SequenceAligner)
    • charite.christo.strap.extensions.MultipleAlignerKalign (implements charite.christo.HasPrgParas, charite.christo.protein.SequenceAlignerSorting)
    • charite.christo.strap.extensions.MultipleAlignerMafft (implements charite.christo.HasPrgParas, charite.christo.protein.SequenceAlignerSorting)
    • charite.christo.strap.extensions.MultipleAlignerMuscle (implements charite.christo.HasPrgParas, charite.christo.protein.SequenceAlignerSorting)
    • charite.christo.strap.extensions.MultipleAlignerProbcons2 (implements charite.christo.HasPrgParas, charite.christo.protein.SequenceAlignerSorting)
    • charite.christo.strap.extensions.MultipleAlignerT_Coffee (implements charite.christo.HasPrgParas, charite.christo.HasScore, charite.christo.protein.NeedsProteins, charite.christo.protein.SequenceAlignerSorting, charite.christo.protein.SequenceAlignerTakesProfile)
    • charite.christo.strap.extensions.PairAlignerJAligner (implements charite.christo.HasScore, charite.christo.protein.SequenceAligner)
    • charite.christo.strap.extensions.PairAlignerNeoBio (implements charite.christo.HasScore, charite.christo.protein.SequenceAligner)
    • charite.christo.strap.extensions.Superimpose_CE (implements charite.christo.HasScore, charite.christo.protein.SequenceAligner3D, charite.christo.protein.Superimpose3D)
    • charite.christo.strap.extensions.Superimpose_GangstaPlus (implements charite.christo.HasScore, charite.christo.protein.Superimpose3D)
    • charite.christo.strap.extensions.Superimpose_LajollaProtein (implements charite.christo.HasScore, charite.christo.protein.Superimpose3D)
    • charite.christo.strap.extensions.Superimpose_native_CE (implements charite.christo.HasControlPanel, charite.christo.HasScore, charite.christo.protein.SequenceAligner3D, charite.christo.protein.Superimpose3D)
    • charite.christo.strap.extensions.Superimpose_TM_align (implements charite.christo.HasScore, charite.christo.protein.SequenceAligner3D, charite.christo.protein.Superimpose3D)
  • charite.christo.protein.AbstractPredictionFromAminoacidSequence (implements charite.christo.Disposable, charite.christo.protein.PredictionFromAminoacidSequence)
    • charite.christo.strap.extensions.SecondaryStructure_NNPREDICT (implements charite.christo.HasControlPanel, charite.christo.NeedsInternet, charite.christo.protein.SecondaryStructure_Predictor)
    • charite.christo.strap.extensions.SecondaryStructure_Sopma (implements charite.christo.HasControlPanel, charite.christo.HasSharedControlPanel, charite.christo.NeedsInternet, charite.christo.protein.SecondaryStructure_Predictor)
    • charite.christo.strap.extensions.TransmembraneHelix_DAS (implements charite.christo.HasControlPanel, charite.christo.HasSharedControlPanel, charite.christo.NeedsInternet, charite.christo.protein.TransmembraneHelix_Predictor)
    • charite.christo.strap.extensions.TransmembraneHelix_HMMTOP (implements charite.christo.Disposable, charite.christo.HasControlPanel, charite.christo.NeedsInternet, charite.christo.protein.TransmembraneHelix_Predictor)
    • charite.christo.strap.extensions.TransmembraneHelix_MEMSAT (implements charite.christo.HasControlPanel, charite.christo.NeedsInternet, charite.christo.protein.TransmembraneHelix_Predictor)
    • charite.christo.strap.extensions.TransmembraneHelix_ORIENTM (implements charite.christo.HasControlPanel, charite.christo.NeedsInternet, charite.christo.protein.TransmembraneHelix_Predictor)
    • charite.christo.strap.extensions.TransmembraneHelix_Phobius (implements charite.christo.HasControlPanel, charite.christo.NeedsInternet, charite.christo.protein.TransmembraneHelix_Predictor)
    • charite.christo.strap.extensions.TransmembraneHelix_PRED_TMR (implements charite.christo.HasControlPanel, charite.christo.HasSharedControlPanel, charite.christo.NeedsInternet, charite.christo.protein.TransmembraneHelix_Predictor)
    • charite.christo.strap.extensions.TransmembraneHelix_SOSUI (implements charite.christo.HasControlPanel, charite.christo.NeedsInternet, charite.christo.protein.TransmembraneHelix_Predictor)
    • charite.christo.strap.extensions.TransmembraneHelix_SPLIT3 (implements charite.christo.HasControlPanel, charite.christo.HasSharedControlPanel, charite.christo.NeedsInternet, charite.christo.protein.TransmembraneHelix_Predictor)
    • charite.christo.strap.extensions.TransmembraneHelix_SPLIT4 (implements charite.christo.Disposable, charite.christo.HasControlPanel, charite.christo.NeedsInternet, charite.christo.protein.TransmembraneHelix_Predictor)
    • charite.christo.strap.extensions.TransmembraneHelix_THUMBUP (implements charite.christo.HasControlPanel, charite.christo.NeedsInternet, charite.christo.protein.TransmembraneHelix_Predictor)
    • charite.christo.strap.extensions.TransmembraneHelix_TMAP (implements charite.christo.HasControlPanel, charite.christo.NeedsInternet, charite.christo.protein.TransmembraneHelix_Predictor)
    • charite.christo.strap.extensions.TransmembraneHelix_TMHMM2 (implements charite.christo.HasControlPanel, charite.christo.NeedsInternet, charite.christo.protein.TransmembraneHelix_Predictor)
    • charite.christo.strap.extensions.TransmembraneHelix_TMPRED (implements charite.christo.HasControlPanel, charite.christo.HasSharedControlPanel, charite.christo.NeedsInternet, charite.christo.protein.TransmembraneHelix_Predictor)
    • charite.christo.strap.extensions.TransmembraneHelix_WaveTM (implements charite.christo.Disposable, charite.christo.HasControlPanel, charite.christo.NeedsInternet, charite.christo.protein.TransmembraneHelix_Predictor)
  • charite.christo.AbstractProxy (implements charite.christo.HasPropertyMap)
    • charite.christo.strap.AbstractAlignerProxy
      • charite.christo.strap.extensions.PairAlignerJAlignerPROXY (implements charite.christo.HasScore, charite.christo.HasSharedControlPanel, charite.christo.protein.SequenceAligner)
      • charite.christo.strap.extensions.PairAlignerNeoBioPROXY (implements charite.christo.HasScore, charite.christo.protein.SequenceAligner)
      • charite.christo.strap.extensions.Superimpose_CEPROXY (implements charite.christo.HasScore, charite.christo.protein.SequenceAligner3D, charite.christo.protein.Superimpose3D)
      • charite.christo.strap.extensions.Superimpose_GoedePROXY (implements charite.christo.protein.Superimpose3D)
      • charite.christo.strap.extensions.Superimpose_LajollaProteinPROXY (implements charite.christo.protein.Superimpose3D)
        • charite.christo.strap.extensions.Superimpose_LajollaRNA
  • charite.christo.strap.extensions.AbstractSubcellularLocation (implements charite.christo.protein.PredictSubcellularLocation)
    • charite.christo.strap.extensions.SubcellularLocationHum_mPloc
    • charite.christo.strap.extensions.SubcellularLocationPLOC (implements charite.christo.HasPrgParas)
  • charite.christo.protein.AbstractValueOfResidue (implements charite.christo.Colored, charite.christo.protein.ValueOfResidue)
    • charite.christo.strap.extensions.Hydrophobicity (implements java.awt.event.ActionListener, charite.christo.HasSharedControlPanel)
    • charite.christo.strap.extensions.ResidueHydrophobicity_TOPPRED (implements charite.christo.HasNativeExec)
  • charite.christo.protein.AbstractVisibleIn123 (implements charite.christo.HasImage, charite.christo.HasPropertyMap, charite.christo.HasWeakRef, charite.christo.protein.VisibleIn123)
    • charite.christo.protein.BasicResidueSelection (implements charite.christo.HasName, charite.christo.HasRenderer, charite.christo.protein.ResidueSelection)
      • charite.christo.strap.extensions.Distance3DToHetero (implements java.awt.event.ActionListener, charite.christo.HasSharedControlPanel, charite.christo.IsEnabled, charite.christo.protein.StrapListener)
  • charite.christo.strap.extensions.AlignmentEntropy (implements java.awt.event.ActionListener, charite.christo.HasModiCount, charite.christo.HasSharedControlPanel, charite.christo.protein.StrapListener, charite.christo.strap.ValueOfAlignPosition)
  • charite.christo.strap.extensions.AlignmentWriterHSSP (implements charite.christo.strap.AlignmentWriter)
  • charite.christo.BasicExecutable (implements charite.christo.CanBeStopped, charite.christo.ChRunnable, charite.christo.Disposable, charite.christo.HasControlPanel)
    • charite.christo.strap.extensions.SecondaryStructure_Jnet (implements charite.christo.protein.SecondaryStructure_Predictor)
    • charite.christo.strap.extensions.Toppred (implements charite.christo.HasPrgParas)
  • charite.christo.strap.extensions.CoiledCoil_PredictorRobinson (implements charite.christo.protein.CoiledCoil_Predictor)
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • charite.christo.strap.extensions.DemoAssociateObjectsToProteins (implements java.awt.event.ActionListener, charite.christo.Disposable, charite.christo.HasRenderer, charite.christo.strap.StrapExtension)
  • charite.christo.strap.extensions.ConsensusSequence (implements charite.christo.strap.StrapExtension)
  • charite.christo.strap.extensions.CountResidues (implements charite.christo.HasModiCount, charite.christo.protein.ValueOfProtein)
  • charite.christo.strap.extensions.PhylogeneticTree_Archaeopteryx (implements charite.christo.HasControlPanel, charite.christo.HasSharedControlPanel, charite.christo.protein.PhylogeneticTree)
  • charite.christo.strap.extensions.PhylogeneticTree_TreeTop (implements charite.christo.protein.PhylogeneticTree)
  • charite.christo.strap.extensions.ProteinsSorter_with3D_without3D (implements charite.christo.strap.ProteinsSorter)
  • charite.christo.strap.extensions.ResidueSolventAccessibility (implements charite.christo.HasModiCount, charite.christo.IsEnabled, charite.christo.protein.ValueOfResidue)
  • charite.christo.strap.extensions.ResidueValues_from_textfile (implements java.awt.event.ActionListener, charite.christo.Disposable, charite.christo.HasControlPanel, charite.christo.HasModiCount, java.lang.Runnable, charite.christo.protein.ValueOfResidue)
  • charite.christo.strap.extensions.SubcellularLocationSherLoc (implements charite.christo.protein.PredictSubcellularLocation)
  • charite.christo.strap.extensions.Superimpose_Goede (implements charite.christo.protein.Superimpose3D)
  • charite.christo.strap.extensions.TransmembraneHelix_TMAP_MULTI (implements charite.christo.HasControlPanel, charite.christo.NeedsInternet, charite.christo.protein.TransmembraneHelix_Predictor)
  • charite.christo.strap.extensions.TransmembraneHelix_TOPPRED (implements charite.christo.Disposable, charite.christo.HasNativeExec, charite.christo.protein.TransmembraneHelix_Predictor)