charite.christo.strap.science
Class FlavinePROXY

java.lang.Object
  charite.christo.AbstractProxy
      charite.christo.strap.science.FlavinePROXY

All Implemented Interfaces:

HasControlPanel, HasPanel, HasPropertyMap

public class FlavinePROXY
extends AbstractProxy
implements HasControlPanel, HasPanel

HELP

Proteins with Flavine Hetero groups

(In preparation)

All flavine containing proteins contained in the PDB are sorted into classes (....LIST) according to the fold and the location of the flavin molecule. You can visualize residues adjacent to the flavine molecule: STRAP-Menu: analyze/select residues ...
XY-Charts (Scatter plots)

• 1d means local sequence similarity
• 1D means global sequence similarity
• 3d means local structure similarity
• 3D means global structure similarity

The Scatter plots allow picking. Each dot is a pair of proteins. A menu for the picked pair is available.

Further buttons

• to load all proteins into the multiple sequence alignment
• to load all proteins into one and the same backbone structure viewer
• to view the table of data
• to superimpose the first two proteins

Two possible ways for detailed 3D-view with side chains:

• From within a 3D-backbone viewer press the rasmol or jmol button
• Load the proteins into the multiple sequence alignment. Use menu view and item protein to external view ...

Field Summary

Fields inherited from class charite.christo.AbstractProxy

ACTIVATION, ADAPTERS_JAR, BIOJAVA_3D, COMMONS_COLLECTIONS, GLUGEN, JCOMMON, JOGL, LOG4J, PFX_INSTALLED, TRY_BOOT_CLASSLOADER

Fields inherited from interface charite.christo.HasPanel

NEW_PANEL, NO_NEW_PANEL

Constructor Summary

FlavinePROXY()

Method Summary

static AbstractAlignmentProject	getInstance()
javax.swing.JComponent	getPanel(int mode)
java.lang.String	getRequiredJars()
static void	setInstance(AbstractAlignmentProject a)

Methods inherited from class charite.christo.AbstractProxy

dispose, disposeProxy, getControlPanel, getPrgParas, getPropertyMap, getProxy, getScore, getSharedControlPanel, getSharedInstance, interpret, jarFile, jarsContainingNativeLibraries, proxyObject, proxyObjectRun, remoteURLs, setOptions, setSharedInstance, usrShareJava

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface charite.christo.HasControlPanel

getControlPanel

Constructor Detail

FlavinePROXY

public FlavinePROXY()

Method Detail

getInstance

public static AbstractAlignmentProject getInstance()

setInstance

public static void setInstance(AbstractAlignmentProject a)

getRequiredJars

public java.lang.String getRequiredJars()

Specified by:

getRequiredJars in class AbstractProxy

getPanel

public javax.swing.JComponent getPanel(int mode)

Specified by:

getPanel in interface HasPanel