# ************************************************************************************************
# *   This text file controls, how annotation text is  converted for the SBML-output.            *
# *                                                                                              *
# *   Files in this format  can be specified by the program option -annotationFormats            *
# *   such as -annotationFormats http://..../file1.txt   http://..../file2.txt    ~/../file3.txt *
# *   In case two files have different versions of the same attribut,                            *
# *   then the later declaration is overriding the earlier.                                      *
# ************************************************************************************************
# Consider the following line:
HAS_PART <rdf:Description rdf:about="#METAID"> <bqbiol:hasPart> <rdf:Bag> <rdf:li rdf:resource="REPLACE"/> </rdf:Bag> </bqbiol:hasPart></rdf:Description> 
# This line tells, that an annotation like $HAS_PART="UNIPROT:hslv_ecoli" is inserted into SBML in the form:
#  <annotation>
#    <rdf:Description rdf:about="#METAID">
#      <bqbiol:hasPart>
#        <rdf:Bag>
#          <rdf:li rdf:resource="urn:miriam:uniprot:hslv_ecoli"/>
#         </rdf:Bag>
#      </bqbiol:isDescribedBy>
#    </rdf:Description>
#  </annotation>
# Since this is a bqbiol-qualifier, this line could also be written
HAS_PART hasPart


# ******************************************
# *  Section biology-qualifiers ( bqbiol ) *
# ******************************************
# Also see http://www.ebi.ac.uk/miriam/main/qualifiers/
# Abbreviation: For bqbiol identifiers this long form can be abbreviated:
#               If the left colum contains a word consisting only of letters, then bqbiol is assumed

HAS_PART hasPart
IS is
IS_DESCRIBED_BY isDescribedBy
ENCODES encodes
HAS_PROPERTY hasProperty
HAS_VERSION hasVersion
IS_ENCODED_BY isEncodedBy
IS_HOMOLOG_TO isHomologTo
IS_PART_OF isPartOf
IS_PROPERTY_OF isPropertyOf
IS_VERSION_OF isVersionOf
OCCURS_IN occursIn


# *********************
# * Section datatypes *
# *********************
#Also see http://www.ebi.ac.uk/miriam/main/datatypes/

UNIPROT: urn:miriam:uniprot:
PMID: urn:miriam:pubmed:
PMID urn:miriam:pubmed:
PUBMED: urn:miriam:pubmed:
GO: urn:miriam:obo.go:GO:
BRENDA: urn:miriam:brenda:
3DMET: urn:miriam:3dmet:
ACLAME: urn:miriam:aclame:
ARRAYEXPRESS: urn:miriam:arrayexpress:
BIOCATALOGUE: urn:miriam:biocatalogue.service:
BioGRID: urn:miriam:biogrid:
BIOMODELS: urn:miriam:biomodels.db:
BIONUMBERS: urn:miriam:bionumbers:
BIOSYSTEMS: urn:miriam:biosystems:
BTO: urn:miriam:obo.bto:
CELL_ONTOLOGY: urn:miriam:obo.clo:
CHEBI: urn:miriam:obo.chebi:
CHEMBL_COMPOUND: urn:miriam:chembl.compound:
CHEMBL_TARGET: urn:miriam:chembl.target:
PDB_CCD: urn:miriam:pdb-ccd:
CHEMIDPLUS: urn:miriam:chemidplus:
CHEMSPIDER: urn:miriam:chemspider:
CLINICALTRIALS urn:miriam:clinicaltrials: