<?xml version="1.0" encoding="utf-8"?>
<jnlp  codebase="http://www.bioinformatics.org/strap/metannogen/">
  <information>
    <title>MetAnnoGen</title>
    <vendor>Christoph Gille, Medical faculty  Charite  of the Humboldt Universitat zu Berlin </vendor>
    <homepage href="http://www.bioinformatics.org/strap/metannogen/"/>
      <description> MetAnnoGen</description>
        <description kind="short">MetAnnoGen </description>        
  </information>

  <security>
    <all-permissions/>
  </security>

  <resources>
    <j2se version="1.6+"  max-heap-size="400m" initial-heap-size="100m" /> 
    <j2se version="1.5+"  max-heap-size="400m" initial-heap-size="100m" /> 
    <j2se version="1.7+"  max-heap-size="400m" initial-heap-size="100m" /> 
    <jar href="metannogen.jar"/>   
    <jar href="http://www.bioinformatics.org/strap/otherPackages/edtftpj-1.5.2.jar"/>   
  </resources>

  <application-desc  main-class="charite.christo.metannogen.Metannogen" java-vm-args="-ea -Xincgc" >
    
    <argument>-edtftp=t</argument>

    <argument>-port=10117</argument>

    
  
    <argument>-datasetForms</argument>
    <argument>http://www.bioinformatics.org/strap/metannogen/datasetForms.txt</argument>
       
    <argument>-networks</argument>
    <argument>KEGG</argument>
    <argument>RECON1</argument>
    <argument>EHMN</argument>
    

  

<argument>-isHergo</argument>

<argument>-dictionaryOfSpecies</argument>
<argument>http://olli.charite.de/Forschung/HepatoNet/FlatNet/compounds.tsv(2,1)</argument>
<argument>http://olli.charite.de/Forschung/HepatoNet/FlatNet/compounds.tsv(3,1)</argument>
<argument>http://olli.charite.de/Forschung/HepatoNet/FlatNet/compounds.tsv(4,1)</argument>
<argument>http://olli.charite.de/Forschung/HepatoNet/FlatNet/compounds.tsv(9,1)</argument>
<argument>http://olli.charite.de/Forschung/HepatoNet/FlatNet/compounds.tsv(7,1)</argument>
<argument>http://olli.charite.de/Forschung/HepatoNet/FlatNet/boelling_species_dict.tsv</argument>

<argument>-names</argument>
<argument>http://olli.charite.de/Forschung/HepatoNet/FlatNet/compounds.tsv(1,2)</argument>

<argument>-dictionaryOfCompartments</argument>
<argument>http://olli.charite.de/Forschung/HepatoNet/FlatNet/dict_compartments.txt</argument>

<argument>-replaceInEquation</argument>
<argument>http://olli.charite.de/Forschung/HepatoNet/FlatNet/boelling_entity_set.tsv</argument>

<argument>-dictionaryOfSimilarSpecies</argument>
<argument>http://olli.charite.de/Forschung/HepatoNet/FlatNet/dict_similar_metabolites.txt</argument>

<argument>-serverURL</argument>
<argument>http://www.bioinformatics.org/strap/cgi-bin/metannogen/hepatonet.pl|http://www.bioinformatics.org/strap/metannogen/datasets/hepatonet/*.dataset</argument>


</application-desc> 



</jnlp>

<!-- 
scp  ~/java/web/metannogen/metannogen.jnlp   $STRAP_DIR_B/metannogen/
xxxx
 -->
