@*~RSC_HELP_3D_CANVAS_NOT_DND If you came here because you intended to drag a protein with the mouse:
This is not the right way to drag a protein.
You can start dragging a protein for example from the respective row header of the sequence alignment.
HTMLDOC_BUTTON:BUTS_MOVIE_Export_Proteins! *@ @*~RSC_HELP_APPLET_LOCAL Note:
3D Visualization in the web browser may fail.
This is because Java applets do not load data from the local file system.
Workaround - 3D visualization
  1. Install a local web server like Apache.
  2. Chose an output file within the directory of the web server, often /var/www/.
  3. In the browser, enter the respective URL which starts with http://localhost/.
*@ @*~RSC_HELP_STRAP_KEYSTROKE The keyboard is used to move the alignment cursor and to introduced/removed alignment gaps.

Cursor Movements
Left
Right
Ctrl+←To first residue
Ctrl+→To last residue
Alt+→To next gap
Alt+←To previous gap
HomeTo first row
EndTo last row
Ctrl+HomeTo first residue
Ctrl+Endto last residue

Movement of the view-port
PgDownScroll down
PgUpScroll up
Shift+PgUpScroll left

Deleting gaps
DeleteDelete gap right from or under cursor
BackspaceDelete gap left from cursor
Ctrl+DeleteDelete next gap right from the cursor
Ctrl+BackspaceDelete next gap left from cursor
Ctrl+Shift+DeleteDelete entire white space under cursor
Ctrl+Shift+BackspaceDelete entire white space left from cursor

Inserting gaps
SpaceInsert gap under cursor
InsertInsert gaps until next residue in above row is reached.
Ctrl+InsRemove gaps until previous residue in above row is reached
Shift+InsInsert gaps until next residue in below row is reached

Repetition number. Performing an operation n times
4 2 SpaceInsert 42 gaps
4 2 DeleteDelete 42 gaps

Moving a sequence blocks, i.e. consecutive residues that are not interrupted by gaps.
>Move block of consecutive residues to the right
<Move block of consecutive residues to the left

Miscellaneous
HTMLDOC_OS_MAC{Ctrl+Command-F or Ctrl- }HTMLDOC_OS_MACF11Full-screen
Ctrl+WClose alignment panel
Ctrl+KClose sequence
UUpper Case
LLower Case

Appearance
Ctrl++Zoom in
Ctrl+-Zoom out
Ctrl+*Display letters in better quality

Go to position
4 2 iMove cursor to residue index 42
4 rMove cursor to 4th row
4 2 cMove cursor to column 42
4 2 nMove cursor pdb-number 42

Save / restore position
SSave current cursor position
sRevert cursor position previously saved
4 SSave current cursor position to "4"
4 sRestore cursor position previously saved in "4"



The mouse actions follow general conventions:
  1. Sequence alignment
  2. Row-header
  3. Scroll-bar or alignment pane
Sequence groups
G xDefine all currently selected sequences as group "x".
g xLoad and select sequences of sequence group "x" if not already loaded. Select these sequences.
h xHide all sequences of sequence group "x".
u xUnselect all sequences of sequence group "x".

Sequence Groups:
Sequences can be grouped. Groups are designated by a digit or letter. The names of all sequences of a group are listed in a file in HTMLDOC_FILE:DIR_SEQUENCE_GROUPS. *@