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  • BIRCH: Comprehensive bioinfo. system - Support tickets

    Submit | Open tickets | Closed tickets

    [ Ticket #1183 ] Edit --> copy should use FASTA format
    Date:
    05/16/13 18:18
    Submitted by:
    B_Fristensky
    Assigned to:
    Alvare
    Category:
    bioLegato
    Priority:
    3
    Ticket group:
    Bug
    Resolution:
    Resolved
    Summary:
    Edit --> copy should use FASTA format
    Original submission:
    BioLegato supports copy and paste to and from the system clipboard. However, Edit--> Copy converts sequences into pseudo-GenBank format, which virtually no web programs will accept. Copy should convert into FASTA format, so that sequences can be pasted into web forms.

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    Followups
    Comment Date By
    bldna, blprotein, blnalign, blpalign : Added a choice to Export Foreign Format to send output to text editor, rather than a file. 03/08/15 19:36 B_Fristensky
    Maybe the best solution is to create an Open in Text Editor
    Function (also open in Spreadsheet for table canvas)
    that has a menu for choosing the format. This makes sense anyway, because you can't predict what format a web form might want. We run the thing through readseq and then open i a text editor.
    03/08/15 17:27 B_Fristensky
    Actually, it's not that simple. Some users may want to Copy and Paste between BioLegato windows. This is in effect the same as Copy Out and Paste in, except it bypasses the BioLegato clipboard.

    Others may want to copy and paste to a web form. The former needs GenBank format to preserve feature annotation, the latter needs fasta format, because most web forms will understand fasta format.
    03/08/15 17:20 B_Fristensky
    No results for "Dependent on ticket"
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    Ticket change history
    Field Old value Date By
    status_id Open 03/08/15 19:40 B_Fristensky
    resolution_id Not Resolved 03/08/15 19:40 B_Fristensky
    close_date 12/31/69 19:00 03/08/15 19:40 B_Fristensky
    status_id Pending 05/16/13 18:18 B_Fristensky
    priority 5 05/16/13 18:18 B_Fristensky
    assigned_to unset 05/16/13 18:18 B_Fristensky
    resolution_id Unset 05/16/13 18:18 B_Fristensky

     

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