BRIE and OAP 2001

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Text in Biology: Biological Research with Information Extraction & Open-Access Publications (BRIE & OAP) 2001
A satellite event at the ISMB'01 conference

Contents

Date & locale

July 26, 2001
Tivoli Gardens, Copenhagen, Denmark

Background

BRIE:

OAP:

Aims

BRIE:

OAP:

Scope

BRIE:

OAP:

Organizing Committee

Sponsors

Program

Morning:

09:00-09:05 - OAP Introduction, J.W. Bizzaro, Bioinformatics.Org, & University of Massachusetts Lowell
09:10-09:30 - "The Public Library of Science", Michael Eisen, Lawrence Berkeley National Lab, & University of California Berkeley (abstract)
09:35-09:55 - "BioMed Central - Open-Access Publishing in the Real World", Matthew Cockerill, BioMed Central (abstract)
10:00-10:15 - Coffee Break
10:15-10:35 - "Information Extraction Using Open-Access Publications", Jan Komorowski, Norwegian University of Science and Technology, (abstract)
10:40-11:00 - OAP Panel Discussion
11:00-11:05 - BRIE Introduction, Alfonso Valencia, CNB-CSIC
11:10-11:30 - "Current Research on 'Smart Documents' in the Biological Knowledge Laboratory", Robert Futrelle, Northeastern University, (abstract)
11:35-11:55 - "Learning Information Extractors from Approximately Correct Patterns and Weakly Labeled Training Data", Mark Craven, University of Wisconsin (abstract)

Afternoon:

13:00-13:20 - "A Generic Statistical Method for Information Extraction in Genomics", Violaine Pillet, INRIA Rhone-Alpes, (abstract)
13:25-13:45 - "Information Extraction with Hidden Markov Models", Eom Jae-Hong, Seoul National University, (abstract)
13:50-14:10 - "The Frame-Based Module of the Suiseki Information Extraction System", Christian Blaschke, CNB-CSIC (abstract)
14:15-14:30 - Coffee Break
14:30-14:50 - "Supporting Discovery in Biomedicine by Association Rule Mining of Bibliographic Databases", Dimitar Hristovski, University of Ljubljana (abstract)
14:55-15:15 - "A Suite of Tools to Mine Relations of Nuclear Receptors and Cofactors from Scientific Literature", Dietrich Schuhmann, LION Bioscience AG (abstract)
15:20-15:40 - BRIE Panel Discussion

See also

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