J.W. Bizzaro

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'''J.W. Bizzaro'''<br />''President, [[Bioinformatics Organization|Bioinformatics Organization, Inc.]]''<br />[http://bioinformatics.org/sendmessage.php?touser=5 Send a Message]<br />Phone: +1 508 890 8600
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'''J.W. Bizzaro'''<br />''President, [[Bioinformatics Organization|Bioinformatics Organization, Inc.]]''<br />[http://bioinformatics.org/sendmessage.php?touser=5 Send a Message]<br />Phone: +1-978-621-8258
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===Publications===
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==Education==
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Zhou, Y., Bizzaro, J.W. and Marx, K.A. 2004. Homopolymer tract length dependent enrichments in functional regions of 27 eukaryotes and their novel dependence on the organism DNA (G+C)% composition. ''BMC Genomics'' '''5'''(1):95. [[http://www.biomedcentral.com/1471-2164/5/95/abstract Abstract]] [[http://www.biomedcentral.com/1471-2164/5/95 Full text]] [[http://www.biomedcentral.com/pubmed/15598342 PubMed ID: 15598342]]
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Doctoral student in Biochemistry Program, [http://www.uml.edu/ University of Massachusetts Lowell]
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Bizzaro, J.W. and Marx, K.A. 2003. Poly: a quantitative analysis tool for simple sequence repeat (SSR) tracts in DNA. ''BMC Bioinformatics'' 2003 Jun 5, '''4'''(1):22. [[http://www.biomedcentral.com/1471-2105/4/22/abstract Abstract]] [[http://www.biomedcentral.com/1471-2105/4/22 Full text]] [[http://www.biomedcentral.com/pubmed/12791171 PubMed ID: 12791171]]
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Master of Science in Chemistry (Biochemistry Concentration), [http://www.bc.edu/ Boston College] (2000)
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Marx, K.A., Bizzaro, J.W., Blake, R.D., Hsien Tsai, M. and Feng Tao, L. 2000. Experimental DNA Melting Behavior of the Three Major ''Schistosoma'' Species. ''Mol Biochem Parasitol'' '''107'''(2):303-307. [[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10779607 PubMed ID: 10779607]]
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Bachelor of Science in Chemistry, ''magna cum laude'', [http://www.uml.edu/ University of Massachusetts Lowell] (1996)
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Blake, R.D., Bizzaro, J.W., Blake, J.D., Day, G.R., Delcourt, S.G., Knowles, J., Marx, K.A. and SantaLucia, J., Jr. 1999. Statistical Mechanical Simulation of Polymeric DNA Melting with MELTSIM. ''Bioinformatics'' '''15'''(5):370-375. [[http://bioinformatics.oupjournals.org/cgi/content/abstract/15/5/370 Abstract]] [[http://bioinformatics.oupjournals.org/cgi/reprint/15/5/370 Full text]] [[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=retrieve&db=pubmed&list_uids=10366657&dopt=Abstract PubMed ID: 10366657]]
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==Selected honors==
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Marx, K.A., Assil, I.Q., Bizzaro, J.W. and Blake, R.D. 1998. Comparison of Experimental to MELTSIM Calculated DNA Melting of the (A+T) Rich ''Dictyostelium discoideum'' Genome: Denaturation Maps Distinguish Exons From Introns. ''J Biomol Struct Dyn'' '''16'''(2):329-339. [[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9833671 PubMed ID: 9833671]]
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Outstanding Student Award, [http://www.theaic.org/ American Institute of Chemists Foundation] (1996)
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Bizzaro, J.W., Marx, K.A. and Blake, R.D. 1997. Comparison of Experimental with Theoretical Melting of the Yeast Genome and Individual Yeast Chromosome Denaturation Mapping Using the Program MELTSIM. ''Materials Research Society Symposium Proceedings'' '''489''':73-77.
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Allen Scattergood Scholar (1995-1996)
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Marx, K.A., Bizzaro, J.W., Assil, I.Q. and Blake, R.D. 1996. Comparison of Experimental and Theoretical Melting Behavior of DNA. ''Materials Research Society Symposium Proceedings'' '''463''':147-152.
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==Selected publications==
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===Seminar presentations===
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Gichora, N.N., Fatumo, S.A., Ngara, M.V., Chelbat, N., Ramdaya, K., Opap, K.B., Siwo, G.H., Adebiyi, M.O., El Gonnouni, A., Zofou, D., Maurady, A.A.M., Adebiyi, E.F., de Villiers, E.P., Masiga, D.K., Bizzaro, J.W., Suravajhala, P., Ommeh, S.C. and Hide, W. 2010. Ten Simple Rules for Organizing a Virtual Conference—Anywhere. ''PLoS Comput Biol'' '''6'''(2):e1000650. [[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000650 Full text (editorial)]]
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"Developing The Open Lab" <br />''O'Reilly Bioinformatics Technology Conference'' (2003)
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Zhou, Y., Bizzaro, J.W. and Marx, K.A. 2004. Homopolymer tract length dependent enrichments in functional regions of 27 eukaryotes and their novel dependence on the organism DNA (G+C)% composition. ''BMC Genomics'' '''5'''(1):95. [[http://www.biomedcentral.com/1471-2164/5/95/abstract Abstract]] [[http://www.biomedcentral.com/1471-2164/5/95 Full text]] [[http://www.biomedcentral.com/pubmed/15598342 PubMed ID: 15598342]]
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"Bioinformatics.Org: Lowering the Bioinformatics Barrier through Collaborations and Partnerships" <br />''Bioinformatics (Marcus Evans)'' (2002)
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Bizzaro, J.W. and Marx, K.A. 2003. Poly: a quantitative analysis tool for simple sequence repeat (SSR) tracts in DNA. ''BMC Bioinformatics'' '''4'''(1):22. [[http://www.biomedcentral.com/1471-2105/4/22/abstract Abstract]] [[http://www.biomedcentral.com/1471-2105/4/22 Full text]] [[http://www.biomedcentral.com/pubmed/12791171 PubMed ID: 12791171]]
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"Free and Open Source Software in Bioinformatics: Motivations and Solutions" <br />''UMass Bioinformatics Conference'' (2002)
+
Marx, K.A., Bizzaro, J.W., Blake, R.D., Hsien Tsai, M. and Feng Tao, L. 2000. Experimental DNA Melting Behavior of the Three Major ''Schistosoma'' Species. ''Mol Biochem Parasitol'' '''107'''(2):303-307. [[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10779607 PubMed ID: 10779607]]
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"Bioinformatics.Org and Bioinformatics: Past, Present and Future" <br />''City College of New York (bioinformatics course)'' (2002)
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Blake, R.D., Bizzaro, J.W., Blake, J.D., Day, G.R., Delcourt, S.G., Knowles, J., Marx, K.A. and SantaLucia, J., Jr. 1999. Statistical Mechanical Simulation of Polymeric DNA Melting with MELTSIM. ''Bioinformatics'' '''15'''(5):370-375. [[http://bioinformatics.oupjournals.org/cgi/content/abstract/15/5/370 Abstract]] [[http://bioinformatics.oupjournals.org/cgi/reprint/15/5/370 Full text]] [[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=retrieve&db=pubmed&list_uids=10366657&dopt=Abstract PubMed ID: 10366657]]
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"Bioinformatics.Org and Bioinformatics: Past, Present and Future" <br />''O'Reilly Bioinformatics Technology Conference'' (2002)
+
Marx, K.A., Assil, I.Q., Bizzaro, J.W. and Blake, R.D. 1998. Comparison of Experimental to MELTSIM Calculated DNA Melting of the (A+T) Rich ''Dictyostelium discoideum'' Genome: Denaturation Maps Distinguish Exons From Introns. ''J Biomol Struct Dyn'' '''16'''(2):329-339. [[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9833671 PubMed ID: 9833671]]
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"Bioinformatics.Org" <br />''City College of New York (bioinformatics course)'' (2001)
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Bizzaro, J.W., Marx, K.A. and Blake, R.D. 1997. Comparison of Experimental with Theoretical Melting of the Yeast Genome and Individual Yeast Chromosome Denaturation Mapping Using the Program MELTSIM. ''Materials Research Society Symposium Proceedings'' '''489''':73-77.
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+
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"Bioinformatics.Org" <br />''IEEE/ACM Boston (meeting)'' (2001)
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"Bioinformatics.Org" <br />''UMass Lowell Chemistry Department (seminar)'' (2001)
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"PIPER: Peer-to-Peer Distribution of Scientific Applications and Data-Flow" <br />''Objects in Bio-Cheminformatics'' (2001)
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Marx, K.A., Bizzaro, J.W., Assil, I.Q. and Blake, R.D. 1996. Comparison of Experimental and Theoretical Melting Behavior of DNA. ''Materials Research Society Symposium Proceedings'' '''463''':147-152.
-
"DNA Homopolymer Tracts: from Mutation to Characterization" <br />''UMass Lowell Chemistry Department (seminar)'' (2001)
+
==Selected seminar presentations==
-
"Distributing Bioinformatics Applications with Piper" <br />''Bioinformatics Open Source Conference (BOSC)'' (2000)
+
"Free and Open Source Software in Bioinformatics: Motivations and Solutions." ''UMass Bioinformatics Conference''. (2002)
-
"The Loci Project" <br />''Boston Area Molecular Biology Computer Types (BAMBCT) (seminar at the Massachusetts General Hospital)'' (1999)
+
"Bioinformatics.Org and Bioinformatics: Past, Present and Future." ''O'Reilly Bioinformatics Technology Conference''. (2002)
-
"Comparison of Experimental to MELTSIM-Calculated DNA Melting" <br />''Boston College Chemistry Department (seminar)'' (1998)
+
"DNA Homopolymer Tracts: from Mutation to Characterization." ''UMass Lowell Chemistry Department (seminar)''. (2001)
-
"Quantitation of Protein Fold: How Modelled States Can Lead to an Expanded Force Field" <br />''Boston College Chemistry Department (seminar)'' (1998)
+
"Distributing Bioinformatics Applications with Piper." ''Bioinformatics Open Source Conference (BOSC)''. (2000)
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===Poster presentations===
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"Comparison of Experimental to MELTSIM-Calculated DNA Melting." ''Boston College Chemistry Department (seminar)''. (1998)
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"Bioinformatics.org: The Open Lab" <br />''Bioinformatics Open Source Conference (BOSC)'' (2000)
+
"Quantitation of Protein Fold: How Modeled States Can Lead to an Expanded Force Field." ''Boston College Chemistry Department (seminar)''. (1998)
-
"Distributing Bioinformatics Applications with Piper" <br />''Intelligent Systems in Molecular Biology (ISMB)'' (2000)
+
==Selected poster presentations==
-
"The Loci Project" <br />''Open Source/Open Science (at the Brookhaven National Laboratory)'' (1999)
+
"The Loci Project." ''Open Source/Open Science (at the Brookhaven National Laboratory)''. (1999)
-
"Comparison of Experimental with Theoretical Melting of the Yeast Genome and Individual Yeast Chromosome Denaturation Mapping Using the Program MELTSIM" <br />''1997 Materials Research Society Symposium'' (1997)
+
"Comparison of Experimental with Theoretical Melting of the Yeast Genome and Individual Yeast Chromosome Denaturation Mapping Using the Program MELTSIM." ''1997 Materials Research Society Symposium''. (1997)
-
"Comparison of Theoretical and Experimental Melting Curves of the Yeast Genome..." plus "MELTSIM, A Windows Program for Simulating the Thermal Dissociation of Polymeric DNAs" <br />''Tenth Conversation in the Discipline of Biomolecular Stereodynamics'' (1997)
+
"Comparison of Theoretical and Experimental Melting Curves of the Yeast Genome..." plus "MELTSIM, A Windows Program for Simulating the Thermal Dissociation of Polymeric DNAs." ''Tenth Conversation in the Discipline of Biomolecular Stereodynamics''. (1997)
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"Comparison of Experimental and Theoretical Melting Behavior of DNA" <br />''1996 Materials Research Society Symposium'' (1996)
+
"Comparison of Experimental and Theoretical Melting Behavior of DNA." ''1996 Materials Research Society Symposium''. (1996)

Revision as of 13:04, 24 January 2011

J.W. Bizzaro.jpg

J.W. Bizzaro
President, Bioinformatics Organization, Inc.
Send a Message
Phone: +1-978-621-8258

Contents

Education

Doctoral student in Biochemistry Program, University of Massachusetts Lowell

Master of Science in Chemistry (Biochemistry Concentration), Boston College (2000)

Bachelor of Science in Chemistry, magna cum laude, University of Massachusetts Lowell (1996)

Selected honors

Outstanding Student Award, American Institute of Chemists Foundation (1996)

Allen Scattergood Scholar (1995-1996)

Selected publications

Gichora, N.N., Fatumo, S.A., Ngara, M.V., Chelbat, N., Ramdaya, K., Opap, K.B., Siwo, G.H., Adebiyi, M.O., El Gonnouni, A., Zofou, D., Maurady, A.A.M., Adebiyi, E.F., de Villiers, E.P., Masiga, D.K., Bizzaro, J.W., Suravajhala, P., Ommeh, S.C. and Hide, W. 2010. Ten Simple Rules for Organizing a Virtual Conference—Anywhere. PLoS Comput Biol 6(2):e1000650. [Full text (editorial)]

Zhou, Y., Bizzaro, J.W. and Marx, K.A. 2004. Homopolymer tract length dependent enrichments in functional regions of 27 eukaryotes and their novel dependence on the organism DNA (G+C)% composition. BMC Genomics 5(1):95. [Abstract] [Full text] [PubMed ID: 15598342]

Bizzaro, J.W. and Marx, K.A. 2003. Poly: a quantitative analysis tool for simple sequence repeat (SSR) tracts in DNA. BMC Bioinformatics 4(1):22. [Abstract] [Full text] [PubMed ID: 12791171]

Marx, K.A., Bizzaro, J.W., Blake, R.D., Hsien Tsai, M. and Feng Tao, L. 2000. Experimental DNA Melting Behavior of the Three Major Schistosoma Species. Mol Biochem Parasitol 107(2):303-307. [PubMed ID: 10779607]

Blake, R.D., Bizzaro, J.W., Blake, J.D., Day, G.R., Delcourt, S.G., Knowles, J., Marx, K.A. and SantaLucia, J., Jr. 1999. Statistical Mechanical Simulation of Polymeric DNA Melting with MELTSIM. Bioinformatics 15(5):370-375. [Abstract] [Full text] [PubMed ID: 10366657]

Marx, K.A., Assil, I.Q., Bizzaro, J.W. and Blake, R.D. 1998. Comparison of Experimental to MELTSIM Calculated DNA Melting of the (A+T) Rich Dictyostelium discoideum Genome: Denaturation Maps Distinguish Exons From Introns. J Biomol Struct Dyn 16(2):329-339. [PubMed ID: 9833671]

Bizzaro, J.W., Marx, K.A. and Blake, R.D. 1997. Comparison of Experimental with Theoretical Melting of the Yeast Genome and Individual Yeast Chromosome Denaturation Mapping Using the Program MELTSIM. Materials Research Society Symposium Proceedings 489:73-77.

Marx, K.A., Bizzaro, J.W., Assil, I.Q. and Blake, R.D. 1996. Comparison of Experimental and Theoretical Melting Behavior of DNA. Materials Research Society Symposium Proceedings 463:147-152.

Selected seminar presentations

"Free and Open Source Software in Bioinformatics: Motivations and Solutions." UMass Bioinformatics Conference. (2002)

"Bioinformatics.Org and Bioinformatics: Past, Present and Future." O'Reilly Bioinformatics Technology Conference. (2002)

"DNA Homopolymer Tracts: from Mutation to Characterization." UMass Lowell Chemistry Department (seminar). (2001)

"Distributing Bioinformatics Applications with Piper." Bioinformatics Open Source Conference (BOSC). (2000)

"Comparison of Experimental to MELTSIM-Calculated DNA Melting." Boston College Chemistry Department (seminar). (1998)

"Quantitation of Protein Fold: How Modeled States Can Lead to an Expanded Force Field." Boston College Chemistry Department (seminar). (1998)

Selected poster presentations

"The Loci Project." Open Source/Open Science (at the Brookhaven National Laboratory). (1999)

"Comparison of Experimental with Theoretical Melting of the Yeast Genome and Individual Yeast Chromosome Denaturation Mapping Using the Program MELTSIM." 1997 Materials Research Society Symposium. (1997)

"Comparison of Theoretical and Experimental Melting Curves of the Yeast Genome..." plus "MELTSIM, A Windows Program for Simulating the Thermal Dissociation of Polymeric DNAs." Tenth Conversation in the Discipline of Biomolecular Stereodynamics. (1997)

"Comparison of Experimental and Theoretical Melting Behavior of DNA." 1996 Materials Research Society Symposium. (1996)

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