Software

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==0-9==
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Everyday bioinformatics is done with sequence search programs like [[BLAST]], sequence analysis programs, like the [[EMBOSS]] and [[Staden Package|Staden]] packages, structure prediction programs like [[THREADER]] or [[PHD]] or molecular imaging/modelling programs like [[RasMol]] and [[WHATIF]].
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* [[3D structure visualization]]
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==A-C==
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* [[Applied Biosystems]]
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* [[Affine gap]]
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* [[Alignment]]
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* [[Amplification]]
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* [[Analytical ultracentrifugation]]
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* [[Aneda]]
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* [[Assembly]]
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* [[Base calling]]
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* [[Bayesian methods]]
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* [[BioCoRE]]
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* [[BLAST]]
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* [[C. elegans]]
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* [[CASP]]
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* [[Chemical kinetics]]
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* [[Chemical structures]]
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* [[Chromatogram]]
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* [[Code generators]]
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* [[Comparative analysis]]
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* [[Comparative genetics]]
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* [[Composition]]
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* [[Correlation]]
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* [[Crystallography]]
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==D-F==
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* [[Data analysis]]
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* [[Data flow]]
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* [[Data mining]]
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* [[Databases]]
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* [[Database interface]]
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* [[Database searching]]
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* [[Database segmentation]]
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* [[Denaturation]]
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* [[Dictionaries]]
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* [[Distance correlations]]
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* [[DNA sequence viewer]]
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* [[DNA sequencing]]
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* [[DNA structure]]
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* [[Drawing]]
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* [[Duplications]]
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* [[Electron density maps]]
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* [[EMBL]]
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* [[EMBOSS]]
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* [[EST]]
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* [[EST clustering similarity alignment]]
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* [[EVA]]
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* [[Evolution]]
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* [[Exons]]
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* [[Extensions]]
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* [[File conversion]]
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* [[Finite elements]]
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* [[Fold recognition]]
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* [[Format converters]]
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==G-I==
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* [[GenBank entry visualization]]
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* [[Gene duplications]]
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* [[Gene expression]]
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* [[Gene finding]]
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* [[Gene regulation]]
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* [[Genetic distances]]
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* [[Genome annotation]]
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* [[Genome development libraries]]
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* [[Genome rearrangement]]
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* [[Genome retrieval]]
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* [[Genomic database system]]
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* [[Genomics]]
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* [[GFF]]
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* [[Global fitting]]
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* [[Graph theory]]
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* [[grep]]
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* [[Group-specific primers]]
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* [[Hidden Markov Models]]
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* [[Homologous genes]]
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* [[Inference]]
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==J-L==
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* [[Java]]
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* [[Libraries]]
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==M-O==
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* [[Maximum likelihood]]
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* [[MCMC]]
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* [[Medline]]
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* [[Melting temperature]]
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* [[Microarray analysis]]
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* [[Modeling]]
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* [[Molecular dynamics]]
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* [[Molecular editors]]
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* [[Molecular graphics]]
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* [[Molecular mechanics]]
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* [[Molecular modeling]]
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* [[Molecular simulations]]
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* [[Molecular structure analysis]]
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* [[Molecular visualization]]
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* [[Molecular weight]]
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* [[Monte Carlo]]
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* [[Motifs]]
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* [[MPI]]
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* [[Multiple]]
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* [[Multiple alignment editors]]
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* [[Multiple genome alignment]]
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* [[Multiple protein structure visualization]]
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* [[Multiple sequence alignment]]
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* [[Multiple sequence alignment drawing]]
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* [[MySQL]]
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* [[NAMD]]
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* [[Neural networks]]
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* [[NMR]]
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* [[Nucleic acids]]
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* [[Oligonucleotides]]
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* [[Online searching]]
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* [[Online tools]]
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==P-R==
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* [[Parallel]]
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* [[Patterns]]
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* [[PCR]]
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* [[PDB]]
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* [[Perl]]
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* [[Phase]]
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* [[Phenotype analysis]]
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* [[Phylogenetics]]
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* [[Phylogenetic trees]]
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* [[Phylogenetic tree reconstruction]]
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* [[Phylogenomics]]
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* [[PostScript]]
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* [[POV-Ray]]
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* [[Prediction]]
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* [[Primers]]
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* [[PROSITE]]
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* [[Protein binding sites]]
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* [[Protein docking]]
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* [[Protein domains]]
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* [[Protein families]]
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* [[Protein interaction]]
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* [[Protein modelling]]
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* [[Protein structure]]
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* [[Protein structure prediction]]
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* [[Protein/DNA/RNA family clustering]]
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* [[PubMed]]
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* [[Python]]
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* [[Real-time visualization]]
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* [[Reannotation]]
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* [[Regular expressions]]
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* [[Regulatory sequence analysis]]
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* [[Rendered animations]]
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* [[RNA]]
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* [[RNA folding]]
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* [[RNA gene finder]]
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* [[RNA motif]]
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* [[RNA pseudoknots]]
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* [[RNA secondary structure]]
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==S-U==
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* [[SCF]]
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* [[Secondary structure]]
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* [[Sequences]]
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* [[Sequence alignment]]
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* [[Sequence analysis]]
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* [[Sequence comparisons]]
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* [[Sequence conversion]]
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* [[Sequence databases]]
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* [[Sequence editor]]
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* [[Sequence finishing]]
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* [[Sequence patterns]]
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* [[Sequence similarity]]
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* [[Sequence utilities]]
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* [[Sequencing]]
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* [[Smith-Waterman]]
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* [[Solid Angle calculation]]
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* [[Statistical mechanics]]
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* [[Steric size calculation]]
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* [[Structural alignments]]
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* [[Structural biology]]
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* [[Structure]]
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* [[Structure analysis]]
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* [[Structure prediction]]
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* [[Substitution]]
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* [[Substitution rates]]
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* [[SwissProt]]
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* [[Tcl/Tk]]
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* [[Thermodynamics]]
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* [[Threading]]
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* [[Trace]]
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* [[Trace chromatogram]]
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* [[Trace files]]
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* [[Trajectory analysis]]
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* [[Transcription factors]]
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* [[Trees]]
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* [[Tree of life]]
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* [[Tree viewers]]
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* [[tRNA searching]]
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==V-Z==
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* [[Visualization]]
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* [[VMD]]
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* [[Web robots]]
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* [[Workflow]]
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==See also==
==See also==
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* [[Topics]] (including links to software)
* [http://www.bioinformatics.org/software/mol_linux.php3 Molecular Linux (original listing)]
* [http://www.bioinformatics.org/software/mol_linux.php3 Molecular Linux (original listing)]

Revision as of 23:23, 14 June 2008

Everyday bioinformatics is done with sequence search programs like BLAST, sequence analysis programs, like the EMBOSS and Staden packages, structure prediction programs like THREADER or PHD or molecular imaging/modelling programs like RasMol and WHATIF.

See also

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