Software

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== Popular software for bioinformatics ==
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Everyday bioinformatics is done with sequence search programs like [[BLAST]], sequence analysis programs, like the [[EMBOSS]] and [[Staden Package|Staden]] packages, structure prediction programs like [[THREADER]] or [[PHD]] or molecular imaging/modelling programs like [[RasMol]] and [[WHAT IF]].
Everyday bioinformatics is done with sequence search programs like [[BLAST]], sequence analysis programs, like the [[EMBOSS]] and [[Staden Package|Staden]] packages, structure prediction programs like [[THREADER]] or [[PHD]] or molecular imaging/modelling programs like [[RasMol]] and [[WHAT IF]].
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==  Linux used in Bioinformatics ==
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More:
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* [[MODELLER]] - Used for homology or comparative modeling of protein three-dimensional structures
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* [http://autodock.scripps.edu/ AutoDock] - Suite of Automated Docking Tools
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* [http://www.gromacs.org/ Gromacs] - A molecular dynamics package primarily designed for biomolecular systems such as proteins and lipids
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==  Popular Linux OS distributions for bioinformatics ==
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*[http://bioknoppix.hpcf.upr.edu/ Bioknoppix]  
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* [http://bioknoppix.hpcf.upr.edu/ Bioknoppix]
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*[http://biopuppy.org BioPuppy - A Minimal Linux OS for Bioinformatics]
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* [http://biopuppy.org BioPuppy] - A Minimal Linux OS for Bioinformatics
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*[http://nebc.nox.ac.uk/tools/bio-linux/bio-linux-5.0 BioLinux]  
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* [http://nebc.nox.ac.uk/tools/bio-linux/bio-linux-5.0 BioLinux]  
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*[http://opendiscovery.org.in Open Discovery - An integrative bioinformatics linux distro with high performance computing capability]
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* [http://opendiscovery.org.in Open Discovery] - An integrative bioinformatics linux distro with high performance computing capability
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*[http://www.bioslax.com/ Bioslax]
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* [http://www.bioslax.com/ Bioslax]
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*[http://www.ubuntu.com/ Ubuntu]
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*[http://fedoraproject.org/ Fedora]
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== Bionformatics Softwares  ==
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Generic yet popular distributions:
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*[http://www.bioinformatics.org/wiki/MODELLER  Modeller- Used for homology or comparative modeling of protein three-dimensional structures]
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* [http://www.ubuntu.com/ Ubuntu]
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*[http://autodock.scripps.edu/ AutoDock - Suite of Automated Docking Tools ]
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* [http://fedoraproject.org/ Fedora]
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*[http://www.gromacs.org/ Gromacs- A molecular dynamics package primarily designed for biomolecular systems such as proteins and lipids ]
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==See also==
==See also==

Revision as of 23:35, 22 September 2010

Contents

Popular software for bioinformatics

Everyday bioinformatics is done with sequence search programs like BLAST, sequence analysis programs, like the EMBOSS and Staden packages, structure prediction programs like THREADER or PHD or molecular imaging/modelling programs like RasMol and WHAT IF.

More:

Popular Linux OS distributions for bioinformatics

Generic yet popular distributions:

See also

For a list of software (derived from SEQwiki), click here Software/list.

External links

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