UGENE

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* View and analysis of annotated [[DNA]] or [[protein]] sequences
* View and analysis of annotated [[DNA]] or [[protein]] sequences
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* Huge files support, native support of gzipped documents
+
* Huge files support, native support of [[gzip | gzipped]] documents
* [[Chromatogram | Chromatograms]] visualization
* [[Chromatogram | Chromatograms]] visualization
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* Number of [[DNA]] plots supported
 
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* Exact local [[sequence alignment]] with [[Smith-Waterman]] algorithm
 
* Search for [[Open reading frames | ORFs]]
* Search for [[Open reading frames | ORFs]]
* Integrated support of search requests to [[National Center for Biotechnology Information|NCBI]] databases
* Integrated support of search requests to [[National Center for Biotechnology Information|NCBI]] databases
* [[Multiple sequence alignment]] with port of [[MUSCLE]]
* [[Multiple sequence alignment]] with port of [[MUSCLE]]
* Easy-to-use search with [[Hidden Markov model | HMM]] profiles using adopted [[HMMER]] package
* Easy-to-use search with [[Hidden Markov model | HMM]] profiles using adopted [[HMMER]] package
 +
* Integrated 3D viewer for files in PDB format
 +
* Designer for custom computational workflows
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* Search for Transcription Factor Binding Sites (TFBS) in DNA sequences
== External links ==
== External links ==

Revision as of 05:50, 16 December 2008

UGENE
File:UGENE 1 2 0 screenshot.png
UGENE viewing Escherichia coli complete genome
Developer Unipro
Latest release 1.2.0 / September 19, 2008
Operating system N/A
Programming language N/A
Language English, Russian
Genre Bioinformatics toolkit
License GPL
Website http://ugene.unipro.ru

UGENE is a free cross-platform bioinformatics software package.

Features

UGENE has modular structure and almost all its functionality comes within plugins. Internally UGENE is designed with support of parallelism to make profit from using multicore computers.

External links

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