cluster # 1008

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1008 cluster # 1008 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1008#0 length = 637 sequences # 1

consensus_1008#1 length = 624 sequences # 1

consensusID : consensus_1008#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 637
fasta sequence

                              [CCGAAAGCCGCGATCGGAGAATCACGCGCAAAACTCTATTTACTTTGCTATTTTAGTGTTTTTCTGAGATAAAAAGTGTTTAGTAAGCTGTAAATCATGGCACACATACCAGCGGCAACGTTGGGCAACAAAAACAAAAAGCATTTTCTCGGCGTTCCTGCCCCACTCGGCTACGTTGCCGGTGTTGGTCGAGGTGCTACCGGATTCACCACCCGTTCGGATATTGGTCCAGCCCGTGATGCGAATGATGTGTCCGACGACCGACATGCACCGCCGGCGGCAAAGCGGCAAAAAGAAAGGAAGAAGAGGAGGAGGACGACGAAGATCTGAACGATTCCAACTACGACGAGTTCAGCGGGTACAGCGGTTCGCTGTTCTCGAAGGATCCGTACGACAAGGACGATGCGGAAGCGGACGCCATCTACGAAAGCATCGACAAGCGGATGGACGAAAAGCGCAAAGAGTACCGGGAGAAGCGGCTGAAGGAAGATCTGGAACGGTACCGGCAGGAGCGGCCGAAAATTCAGCAACAATTTTCCGACCTGAAGCGCAACCTGATTGCCGTGTCGGAGGAGGAGTGGGCCAACCTGCCCGAGGTGGGCGACAGCCGCAACAAGAAGCAGCGCAATCCGCGGGC]

[+] EMBL BM615235             [CCGAAAGCCGCGATCGGAGAATCACGCGCAAAACTCTATTTACTTTGCTATTTTAGTGTTTTTCTGAGATAAAAAGTGTTTAGTAAGCTGTAAATCATGGCACACATACCAGCGGCAACGTTGGGCAACAAAAACAAAAAGCATTTTCTCGGCGTTCCTGCCCCACTCGGCTACGTTGCCGGTGTTGGTCGAGGTGCTACCGGATTCACCACCCGTTCGGATATTGGTCCAGCCCGTGATGCGAATGATGTGTCCGACGACCGACATGCACCGCCGGCGGCAAAGCGGCAAAAAGAAAGGAAGAAGAGGAGGAGGACGACGAAGATCTGAACGATTCCAACTACGACGAGTTCAGCGGGTACAGCGGTTCGCTGTTCTCGAAGGATCCGTACGACAAGGACGATGCGGAAGCGGACGCCATCTACGAAAGCATCGACAAGCGGATGGACGAAAAGCGCAAAGAGTACCGGGAGAAGCGGCTGAAGGAAGATCTGGAACGGTACCGGCAGGAGCGGCCGAAAATTCAGCAACAATTTTCCGACCTGAAGCGCAACCTGATTGCCGTGTCGGAGGAGGAGTGGGCCAACCTGCCCGAGGTGGGCGACAGCCGCAACAAGAAGCAGCGCAATCCGCGGGC]




>consensus_1008#0
CCGAAAGCCGCGATCGGAGAATCACGCGCAAAACTCTATTTACTTTGCTATTTTAGTGTT
TTTCTGAGATAAAAAGTGTTTAGTAAGCTGTAAATCATGGCACACATACCAGCGGCAACG
TTGGGCAACAAAAACAAAAAGCATTTTCTCGGCGTTCCTGCCCCACTCGGCTACGTTGCC
GGTGTTGGTCGAGGTGCTACCGGATTCACCACCCGTTCGGATATTGGTCCAGCCCGTGAT
GCGAATGATGTGTCCGACGACCGACATGCACCGCCGGCGGCAAAGCGGCAAAAAGAAAGG
AAGAAGAGGAGGAGGACGACGAAGATCTGAACGATTCCAACTACGACGAGTTCAGCGGGT
ACAGCGGTTCGCTGTTCTCGAAGGATCCGTACGACAAGGACGATGCGGAAGCGGACGCCA
TCTACGAAAGCATCGACAAGCGGATGGACGAAAAGCGCAAAGAGTACCGGGAGAAGCGGC
TGAAGGAAGATCTGGAACGGTACCGGCAGGAGCGGCCGAAAATTCAGCAACAATTTTCCG
ACCTGAAGCGCAACCTGATTGCCGTGTCGGAGGAGGAGTGGGCCAACCTGCCCGAGGTGG
GCGACAGCCGCAACAAGAAGCAGCGCAATCCGCGGGC

consensusID : consensus_1008#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 624
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGCGCAAAACTCTATTTACTTTGCTATTTTAGTGTTTTTCTGAGATAAAAAGTGTTTAGTAAGCTGTAAATCATGGCACACATACCAGCGGCAACGTTGGGCAACAAAAACAAAAAGCATTTTCTCGGCGTTCCTGCCCCACTCGGCTACGTTGCCGGTGTTTGTCGAGGTGCTACCGGATTCACCACCCGTTCGGATATTGGTCCAGCCCGTGATGCGAATGATGTGTCCGACGACCGACATGCACCGCCGGCGGCAAAGCGCAAAAAGAAGGAAGAAGAGGAGGAGGACGACGAAGATCTGAACGATTCCAACTACGACGAGTTCAGCGGGTACAGCGGTTCGCTGTTCTCGAAGGATCCGTACGACAAGGACGATGCGGAAGCGGACGCCATCTACGAAAGCATCGACAAGCGGATGGACGAAAAGCGCAAAGAGTACCGGGAGAAGCGGCTGAAGGAAGATCTGGAACGGTACCGGCAGGAGCGGCCGAAAATTCAGCAACAATTTTCCGACCTGAAGCGCAACCTGATTGCCGTGTCGGAGGAGGAGTGGGCCAACCTGCCCGAGGTGGGCGACAGCCGCAACAAGAAGCAGC]

[+] EMBL BM651543             [CCGCCCACGCGTCCGCCCACGCGTCCGGCGCAAAACTCTATTTACTTTGCTATTTTAGTGTTTTTCTGAGATAAAAAGTGTTTAGTAAGCTGTAAATCATGGCACACATACCAGCGGCAACGTTGGGCAACAAAAACAAAAAGCATTTTCTCGGCGTTCCTGCCCCACTCGGCTACGTTGCCGGTGTTTGTCGAGGTGCTACCGGATTCACCACCCGTTCGGATATTGGTCCAGCCCGTGATGCGAATGATGTGTCCGACGACCGACATGCACCGCCGGCGGCAAAGCGCAAAAAGAAGGAAGAAGAGGAGGAGGACGACGAAGATCTGAACGATTCCAACTACGACGAGTTCAGCGGGTACAGCGGTTCGCTGTTCTCGAAGGATCCGTACGACAAGGACGATGCGGAAGCGGACGCCATCTACGAAAGCATCGACAAGCGGATGGACGAAAAGCGCAAAGAGTACCGGGAGAAGCGGCTGAAGGAAGATCTGGAACGGTACCGGCAGGAGCGGCCGAAAATTCAGCAACAATTTTCCGACCTGAAGCGCAACCTGATTGCCGTGTCGGAGGAGGAGTGGGCCAACCTGCCCGAGGTGGGCGACAGCCGCAACAAGAAGCAGC]




>consensus_1008#1
CCGCCCACGCGTCCGCCCACGCGTCCGGCGCAAAACTCTATTTACTTTGCTATTTTAGTG
TTTTTCTGAGATAAAAAGTGTTTAGTAAGCTGTAAATCATGGCACACATACCAGCGGCAA
CGTTGGGCAACAAAAACAAAAAGCATTTTCTCGGCGTTCCTGCCCCACTCGGCTACGTTG
CCGGTGTTTGTCGAGGTGCTACCGGATTCACCACCCGTTCGGATATTGGTCCAGCCCGTG
ATGCGAATGATGTGTCCGACGACCGACATGCACCGCCGGCGGCAAAGCGCAAAAAGAAGG
AAGAAGAGGAGGAGGACGACGAAGATCTGAACGATTCCAACTACGACGAGTTCAGCGGGT
ACAGCGGTTCGCTGTTCTCGAAGGATCCGTACGACAAGGACGATGCGGAAGCGGACGCCA
TCTACGAAAGCATCGACAAGCGGATGGACGAAAAGCGCAAAGAGTACCGGGAGAAGCGGC
TGAAGGAAGATCTGGAACGGTACCGGCAGGAGCGGCCGAAAATTCAGCAACAATTTTCCG
ACCTGAAGCGCAACCTGATTGCCGTGTCGGAGGAGGAGTGGGCCAACCTGCCCGAGGTGG
GCGACAGCCGCAACAAGAAGCAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1008#0      --CCGAAAGCCGCGATCGGAGAATCACGCGCAAAACTCTATTTACTTTGCTATTTTAGTG 58
consensus_1008#1      CCGCCCACGCGTCCGCCCACGCGTCCGGCGCAAAACTCTATTTACTTTGCTATTTTAGTG 60
                         *  * **  *   *   *  **  *********************************

consensus_1008#0      TTTTTCTGAGATAAAAAGTGTTTAGTAAGCTGTAAATCATGGCACACATACCAGCGGCAA 118
consensus_1008#1      TTTTTCTGAGATAAAAAGTGTTTAGTAAGCTGTAAATCATGGCACACATACCAGCGGCAA 120
                      ************************************************************

consensus_1008#0      CGTTGGGCAACAAAAACAAAAAGCATTTTCTCGGCGTTCCTGCCCCACTCGGCTACGTTG 178
consensus_1008#1      CGTTGGGCAACAAAAACAAAAAGCATTTTCTCGGCGTTCCTGCCCCACTCGGCTACGTTG 180
                      ************************************************************

consensus_1008#0      CCGGTGTTGGTCGAGGTGCTACCGGATTCACCACCCGTTCGGATATTGGTCCAGCCCGTG 238
consensus_1008#1      CCGGTGTTTGTCGAGGTGCTACCGGATTCACCACCCGTTCGGATATTGGTCCAGCCCGTG 240
                      ******** ***************************************************

consensus_1008#0      ATGCGAATGATGTGTCCGACGACCGACATGCACCGCCGGCGGCAAAGCGGCAAAAAGAAA 298
consensus_1008#1      ATGCGAATGATGTGTCCGACGACCGACATGCACCGCCGGCGGCAAAGCG-CAAAAAGAA- 298
                      ************************************************* ********* 

consensus_1008#0      GGAAGAAGAGGAGGAGGACGACGAAGATCTGAACGATTCCAACTACGACGAGTTCAGCGG 358
consensus_1008#1      GGAAGAAGAGGAGGAGGACGACGAAGATCTGAACGATTCCAACTACGACGAGTTCAGCGG 358
                      ************************************************************

consensus_1008#0      GTACAGCGGTTCGCTGTTCTCGAAGGATCCGTACGACAAGGACGATGCGGAAGCGGACGC 418
consensus_1008#1      GTACAGCGGTTCGCTGTTCTCGAAGGATCCGTACGACAAGGACGATGCGGAAGCGGACGC 418
                      ************************************************************

consensus_1008#0      CATCTACGAAAGCATCGACAAGCGGATGGACGAAAAGCGCAAAGAGTACCGGGAGAAGCG 478
consensus_1008#1      CATCTACGAAAGCATCGACAAGCGGATGGACGAAAAGCGCAAAGAGTACCGGGAGAAGCG 478
                      ************************************************************

consensus_1008#0      GCTGAAGGAAGATCTGGAACGGTACCGGCAGGAGCGGCCGAAAATTCAGCAACAATTTTC 538
consensus_1008#1      GCTGAAGGAAGATCTGGAACGGTACCGGCAGGAGCGGCCGAAAATTCAGCAACAATTTTC 538
                      ************************************************************

consensus_1008#0      CGACCTGAAGCGCAACCTGATTGCCGTGTCGGAGGAGGAGTGGGCCAACCTGCCCGAGGT 598
consensus_1008#1      CGACCTGAAGCGCAACCTGATTGCCGTGTCGGAGGAGGAGTGGGCCAACCTGCCCGAGGT 598
                      ************************************************************

consensus_1008#0      GGGCGACAGCCGCAACAAGAAGCAGCGCAATCCGCGGGC 637
consensus_1008#1      GGGCGACAGCCGCAACAAGAAGCAGC------------- 624
                      **************************