cluster # 102

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Anopheles gambiae
cluster # 102 cluster # 102 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_102#0 length = 725 sequences # 1

consensus_102#1 length = 158 sequences # 1

consensusID : consensus_102#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 725
fasta sequence

                              [GATGAACACTCTGGAAACTGGATCTCAAAATTTGTTACTTTTAAGCAGAAAAACATTACTTTTGCACTACCCGTTCATAACGAAAACCATAAAACACTGCATTATGAGAATAGTTATTCCACATGATGTTCTAATCATTACATCAACGACAAGAAAATATAAATTCATAAAATAATGTAATAGAAATGGGCAAACATGTATGAAGCAAACACATTCCAGCAAAATGAAATAAAACAAAACACATGAGCACAAAACTACAGTAAATACAAACGAAGCATACTAAGCAAGCAGATGGAAAACATTGAAAATTTCAATAAACTACCCATGCAGTACAGTACACAGTATACTAGTGTAAGTGATCCGTGGTATGATATCCAACCAAGTGTCGTGAAGGGCATGATTGCATAAACAGCTGAAAATAATCATACGTTTTTGTCGCTATGATGAGAACATAACAAAGTAAAGCTAACAGGTGAAACATCACAACTAACATAATTTTAAAAAAGCCCGAACAAAACCGAAACATAACATAGACAATGAAATCTTGTTGGTGATAGTATTGATAATGCTGCTATGAATTGAATCGAGAAGGTGAAAATGCCGATGTAACTGAGCAACAGGAACATAACAATGATGGATAAACAAAGAGAGAGAGAGCAGAGCAGAGCAAAACAGATGATAAAATAAATCCATATACATAAACAAGCGATAAACATTCACAAACA]

[+] EMBL BX612572             [GATGAACACTCTGGAAACTGGATCTCAAAATTTGTTACTTTTAAGCAGAAAAACATTACTTTTGCACTACCCGTTCATAACGAAAACCATAAAACACTGCATTATGAGAATAGTTATTCCACATGATGTTCTAATCATTACATCAACGACAAGAAAATATAAATTCATAAAATAATGTAATAGAAATGGGCAAACATGTATGAAGCAAACACATTCCAGCAAAATGAAATAAAACAAAACACATGAGCACAAAACTACAGTAAATACAAACGAAGCATACTAAGCAAGCAGATGGAAAACATTGAAAATTTCAATAAACTACCCATGCAGTACAGTACACAGTATACTAGTGTAAGTGATCCGTGGTATGATATCCAACCAAGTGTCGTGAAGGGCATGATTGCATAAACAGCTGAAAATAATCATACGTTTTTGTCGCTATGATGAGAACATAACAAAGTAAAGCTAACAGGTGAAACATCACAACTAACATAATTTTAAAAAAGCCCGAACAAAACCGAAACATAACATAGACAATGAAATCTTGTTGGTGATAGTATTGATAATGCTGCTATGAATTGAATCGAGAAGGTGAAAATGCCGATGTAACTGAGCAACAGGAACATAACAATGATGGATAAACAAAGAGAGAGAGAGCAGAGCAGAGCAAAACAGATGATAAAATAAATCCATATACATAAACAAGCGATAAACATTCACAAACA]




>consensus_102#0
GATGAACACTCTGGAAACTGGATCTCAAAATTTGTTACTTTTAAGCAGAAAAACATTACT
TTTGCACTACCCGTTCATAACGAAAACCATAAAACACTGCATTATGAGAATAGTTATTCC
ACATGATGTTCTAATCATTACATCAACGACAAGAAAATATAAATTCATAAAATAATGTAA
TAGAAATGGGCAAACATGTATGAAGCAAACACATTCCAGCAAAATGAAATAAAACAAAAC
ACATGAGCACAAAACTACAGTAAATACAAACGAAGCATACTAAGCAAGCAGATGGAAAAC
ATTGAAAATTTCAATAAACTACCCATGCAGTACAGTACACAGTATACTAGTGTAAGTGAT
CCGTGGTATGATATCCAACCAAGTGTCGTGAAGGGCATGATTGCATAAACAGCTGAAAAT
AATCATACGTTTTTGTCGCTATGATGAGAACATAACAAAGTAAAGCTAACAGGTGAAACA
TCACAACTAACATAATTTTAAAAAAGCCCGAACAAAACCGAAACATAACATAGACAATGA
AATCTTGTTGGTGATAGTATTGATAATGCTGCTATGAATTGAATCGAGAAGGTGAAAATG
CCGATGTAACTGAGCAACAGGAACATAACAATGATGGATAAACAAAGAGAGAGAGAGCAG
AGCAGAGCAAAACAGATGATAAAATAAATCCATATACATAAACAAGCGATAAACATTCAC
AAACA

consensusID : consensus_102#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 158
fasta sequence

                              [AATAAGGTAATAGAAAGGGGCAAACATGTATGAAGCAAACACATTCCAGCAAAAGGAAATAAAACAAAACACATGAGCACAAAACTACAGGAAATACAAACGAAGCTAAGCTAAGCAAGCAGAGGGAAAAAATGGAAAATGGCAATAAACTACCCAGG]

[+] EMBL BX613718             [AATAAGGTAATAGAAAGGGGCAAACATGTATGAAGCAAACACATTCCAGCAAAAGGAAATAAAACAAAACACATGAGCACAAAACTACAGGAAATACAAACGAAGCTAAGCTAAGCAAGCAGAGGGAAAAAATGGAAAATGGCAATAAACTACCCAGG]




>consensus_102#1
AATAAGGTAATAGAAAGGGGCAAACATGTATGAAGCAAACACATTCCAGCAAAAGGAAAT
AAAACAAAACACATGAGCACAAAACTACAGGAAATACAAACGAAGCTAAGCTAAGCAAGC
AGAGGGAAAAAATGGAAAATGGCAATAAACTACCCAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_102#0      GATGAACACTCTGGAAACTGGATCTCAAAATTTGTTACTTTTAAGCAGAAAAACATTACT 60
consensus_102#1      ------------------------------------------------------------
                                                                                 

consensus_102#0      TTTGCACTACCCGTTCATAACGAAAACCATAAAACACTGCATTATGAGAATAGTTATTCC 120
consensus_102#1      ------------------------------------------------------------
                                                                                 

consensus_102#0      ACATGATGTTCTAATCATTACATCAACGACAAGAAAATATAAATTCATAAAATAATGTAA 180
consensus_102#1      --------------------------------------------------AATAAGGTAA 10
                                                                       ***** ****

consensus_102#0      TAGAAATGGGCAAACATGTATGAAGCAAACACATTCCAGCAAAATGAAATAAAACAAAAC 240
consensus_102#1      TAGAAAGGGGCAAACATGTATGAAGCAAACACATTCCAGCAAAAGGAAATAAAACAAAAC 70
                     ****** ************************************* ***************

consensus_102#0      ACATGAGCACAAAACTACAGTAAATACAAACGAAGC-ATACTAAGCAAGCAGATGGAAAA 299
consensus_102#1      ACATGAGCACAAAACTACAGGAAATACAAACGAAGCTAAGCTAAGCAAGCAGAGGGAAAA 130
                     ******************** *************** *  ************* ******

consensus_102#0      CATTGAAAATTTCAATAAACTACCCATGCAGTACAGTACACAGTATACTAGTGTAAGTGA 359
consensus_102#1      AATGGAAAATGGCAATAAACTACCCAGG-------------------------------- 158
                      ** ******  ************** *                                

consensus_102#0      TCCGTGGTATGATATCCAACCAAGTGTCGTGAAGGGCATGATTGCATAAACAGCTGAAAA 419
consensus_102#1      ------------------------------------------------------------
                                                                                 

consensus_102#0      TAATCATACGTTTTTGTCGCTATGATGAGAACATAACAAAGTAAAGCTAACAGGTGAAAC 479
consensus_102#1      ------------------------------------------------------------
                                                                                 

consensus_102#0      ATCACAACTAACATAATTTTAAAAAAGCCCGAACAAAACCGAAACATAACATAGACAATG 539
consensus_102#1      ------------------------------------------------------------
                                                                                 

consensus_102#0      AAATCTTGTTGGTGATAGTATTGATAATGCTGCTATGAATTGAATCGAGAAGGTGAAAAT 599
consensus_102#1      ------------------------------------------------------------
                                                                                 

consensus_102#0      GCCGATGTAACTGAGCAACAGGAACATAACAATGATGGATAAACAAAGAGAGAGAGAGCA 659
consensus_102#1      ------------------------------------------------------------
                                                                                 

consensus_102#0      GAGCAGAGCAAAACAGATGATAAAATAAATCCATATACATAAACAAGCGATAAACATTCA 719
consensus_102#1      ------------------------------------------------------------
                                                                                 

consensus_102#0      CAAACA 725
consensus_102#1      ------