cluster # 103

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Anopheles gambiae
cluster # 103 cluster # 103 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_103#0 length = 658 sequences # 1

consensus_103#1 length = 647 sequences # 1

consensusID : consensus_103#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 658
fasta sequence

                              [CCGGGCGTCAGCTGGAGGAGCCGTGAAAGAATGACGTTTGTCGTGAAGTATACACAAAACGAAAAAAATCTCATTTTACTGTGATTTTCAACCAAAAGCAAATCGGTATAACTAAAGTAGAAGGAAGTAAATGTACGCTACAAACATGAACAAATCGAACGAAAAAAGTATACACGAAATGTTGAAAAACACTCCGTCCATGAACGATAGCACTGATGTGGTTCACACTGGTTCTGAGCAGCAAACGATCAAGCACTCGACCACGCTGACCCTGCGAAACGTTAGCAACCACAGTTTATCGTCGCCAACCTCGGTCAGCCTGGAGGACGAGTCGGCGTACATTAAGAACGGCTCCTCGAAGCTCGATACGTTCCGCAACTGGAGCATTACGACGTACAAATGCACCAAACAGATTATGCTGGAGAAGCTGGGCAAATCGACGCGCACGGTCGATCTCGAGCTCGAGGCGCAGATCGACCAGCTGAAGGAGACGCAGAAAAAGTATCTCAGCATATTGCGCCTGTCGCGCGCATTCACGTCCCACTTTTACAACTGCATGCAAACCCAGAGCCTGCTGTCGGAAACATTTGCCGACCTGGCACAAAAGAGTCCGGAACTGCAGGAGGAGTTTCTGCGGAACGCCGAAACGCAGCGGATC]

[+] EMBL BM648526             [CCGGGCGTCAGCTGGAGGAGCCGTGAAAGAATGACGTTTGTCGTGAAGTATACACAAAACGAAAAAAATCTCATTTTACTGTGATTTTCAACCAAAAGCAAATCGGTATAACTAAAGTAGAAGGAAGTAAATGTACGCTACAAACATGAACAAATCGAACGAAAAAAGTATACACGAAATGTTGAAAAACACTCCGTCCATGAACGATAGCACTGATGTGGTTCACACTGGTTCTGAGCAGCAAACGATCAAGCACTCGACCACGCTGACCCTGCGAAACGTTAGCAACCACAGTTTATCGTCGCCAACCTCGGTCAGCCTGGAGGACGAGTCGGCGTACATTAAGAACGGCTCCTCGAAGCTCGATACGTTCCGCAACTGGAGCATTACGACGTACAAATGCACCAAACAGATTATGCTGGAGAAGCTGGGCAAATCGACGCGCACGGTCGATCTCGAGCTCGAGGCGCAGATCGACCAGCTGAAGGAGACGCAGAAAAAGTATCTCAGCATATTGCGCCTGTCGCGCGCATTCACGTCCCACTTTTACAACTGCATGCAAACCCAGAGCCTGCTGTCGGAAACATTTGCCGACCTGGCACAAAAGAGTCCGGAACTGCAGGAGGAGTTTCTGCGGAACGCCGAAACGCAGCGGATC]




>consensus_103#0
CCGGGCGTCAGCTGGAGGAGCCGTGAAAGAATGACGTTTGTCGTGAAGTATACACAAAAC
GAAAAAAATCTCATTTTACTGTGATTTTCAACCAAAAGCAAATCGGTATAACTAAAGTAG
AAGGAAGTAAATGTACGCTACAAACATGAACAAATCGAACGAAAAAAGTATACACGAAAT
GTTGAAAAACACTCCGTCCATGAACGATAGCACTGATGTGGTTCACACTGGTTCTGAGCA
GCAAACGATCAAGCACTCGACCACGCTGACCCTGCGAAACGTTAGCAACCACAGTTTATC
GTCGCCAACCTCGGTCAGCCTGGAGGACGAGTCGGCGTACATTAAGAACGGCTCCTCGAA
GCTCGATACGTTCCGCAACTGGAGCATTACGACGTACAAATGCACCAAACAGATTATGCT
GGAGAAGCTGGGCAAATCGACGCGCACGGTCGATCTCGAGCTCGAGGCGCAGATCGACCA
GCTGAAGGAGACGCAGAAAAAGTATCTCAGCATATTGCGCCTGTCGCGCGCATTCACGTC
CCACTTTTACAACTGCATGCAAACCCAGAGCCTGCTGTCGGAAACATTTGCCGACCTGGC
ACAAAAGAGTCCGGAACTGCAGGAGGAGTTTCTGCGGAACGCCGAAACGCAGCGGATC

consensusID : consensus_103#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 647
fasta sequence

                              [CCGCCCACGCGTCCGTACACAAAACGAAAAAAATCTCATTTTACTGTGATTTTCAACCAAAAGCAAATCGGTATAACTAAAGTAGAAGACAGGAAGTAAATGTACGCTACAAACATGAACAAATCGAACGAGAAAAGTATACACGAAATGTTGAAAAACACTCCGTCCATGAACGATAGCACTGATGTGGTTCACACCGGTTCTGAGCAGCAAACGATCAAGCACTCGACCACGCTGACCCTGCGAAACGTTAGCAACCACAGTTTATCGTCGCCAACCTCGGTCAGCCTGGAGGACGAGTCGGCGTACATTAAGAACGGCTCCTCGAAGCTCGATACGTTCCGCAACTGGAGCATTACCACGTACAAATGCACCAAACAGATTATGCTGGAGAAGCTAGGCAAATCGACGCGCACGGTCGATCTCGAGCTCGAGGCGCAGATTGACCAGCTGAAGGAGACGCAGAAAAAGTATCTCAGCATATTGCGCCTGTCGCGCGCCTTCACGTCCCACTTTTACAACTGCATGCAAACCCAGAGCCTGCTGTCGGAAACATTTGCCGACCTGGCACAAAAGAGTCCGGAACTGCAGGAGGAGTTTCTGCGGAACGCCGAAACGCAGCGGATCCTGACCAAGAACGGCGAGCT]

[+] EMBL BM579121             [CCGCCCACGCGTCCGTACACAAAACGAAAAAAATCTCATTTTACTGTGATTTTCAACCAAAAGCAAATCGGTATAACTAAAGTAGAAGACAGGAAGTAAATGTACGCTACAAACATGAACAAATCGAACGAGAAAAGTATACACGAAATGTTGAAAAACACTCCGTCCATGAACGATAGCACTGATGTGGTTCACACCGGTTCTGAGCAGCAAACGATCAAGCACTCGACCACGCTGACCCTGCGAAACGTTAGCAACCACAGTTTATCGTCGCCAACCTCGGTCAGCCTGGAGGACGAGTCGGCGTACATTAAGAACGGCTCCTCGAAGCTCGATACGTTCCGCAACTGGAGCATTACCACGTACAAATGCACCAAACAGATTATGCTGGAGAAGCTAGGCAAATCGACGCGCACGGTCGATCTCGAGCTCGAGGCGCAGATTGACCAGCTGAAGGAGACGCAGAAAAAGTATCTCAGCATATTGCGCCTGTCGCGCGCCTTCACGTCCCACTTTTACAACTGCATGCAAACCCAGAGCCTGCTGTCGGAAACATTTGCCGACCTGGCACAAAAGAGTCCGGAACTGCAGGAGGAGTTTCTGCGGAACGCCGAAACGCAGCGGATCCTGACCAAGAACGGCGAGCT]




>consensus_103#1
CCGCCCACGCGTCCGTACACAAAACGAAAAAAATCTCATTTTACTGTGATTTTCAACCAA
AAGCAAATCGGTATAACTAAAGTAGAAGACAGGAAGTAAATGTACGCTACAAACATGAAC
AAATCGAACGAGAAAAGTATACACGAAATGTTGAAAAACACTCCGTCCATGAACGATAGC
ACTGATGTGGTTCACACCGGTTCTGAGCAGCAAACGATCAAGCACTCGACCACGCTGACC
CTGCGAAACGTTAGCAACCACAGTTTATCGTCGCCAACCTCGGTCAGCCTGGAGGACGAG
TCGGCGTACATTAAGAACGGCTCCTCGAAGCTCGATACGTTCCGCAACTGGAGCATTACC
ACGTACAAATGCACCAAACAGATTATGCTGGAGAAGCTAGGCAAATCGACGCGCACGGTC
GATCTCGAGCTCGAGGCGCAGATTGACCAGCTGAAGGAGACGCAGAAAAAGTATCTCAGC
ATATTGCGCCTGTCGCGCGCCTTCACGTCCCACTTTTACAACTGCATGCAAACCCAGAGC
CTGCTGTCGGAAACATTTGCCGACCTGGCACAAAAGAGTCCGGAACTGCAGGAGGAGTTT
CTGCGGAACGCCGAAACGCAGCGGATCCTGACCAAGAACGGCGAGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_103#0      CCGGGCGTCAGCTGGAGGAGCCGTGAAAGAATGACGTTTGTCGTGAAGTATACACAAAAC 60
consensus_103#1      ---------------------------------CCGCCCA-CGCGTC-CGTACACAAAAC 25
                                                       **     ** *     **********

consensus_103#0      GAAAAAAATCTCATTTTACTGTGATTTTCAACCAAAAGCAAATCGGTATAACTAAAGTAG 120
consensus_103#1      GAAAAAAATCTCATTTTACTGTGATTTTCAACCAAAAGCAAATCGGTATAACTAAAGTAG 85
                     ************************************************************

consensus_103#0      AAG----GAAGTAAATGTACGCTACAAACATGAACAAATCGAACGAAAAAAGTATACACG 176
consensus_103#1      AAGACAGGAAGTAAATGTACGCTACAAACATGAACAAATCGAACGAGAAAAGTATACACG 145
                     ***    *************************************** *************

consensus_103#0      AAATGTTGAAAAACACTCCGTCCATGAACGATAGCACTGATGTGGTTCACACTGGTTCTG 236
consensus_103#1      AAATGTTGAAAAACACTCCGTCCATGAACGATAGCACTGATGTGGTTCACACCGGTTCTG 205
                     **************************************************** *******

consensus_103#0      AGCAGCAAACGATCAAGCACTCGACCACGCTGACCCTGCGAAACGTTAGCAACCACAGTT 296
consensus_103#1      AGCAGCAAACGATCAAGCACTCGACCACGCTGACCCTGCGAAACGTTAGCAACCACAGTT 265
                     ************************************************************

consensus_103#0      TATCGTCGCCAACCTCGGTCAGCCTGGAGGACGAGTCGGCGTACATTAAGAACGGCTCCT 356
consensus_103#1      TATCGTCGCCAACCTCGGTCAGCCTGGAGGACGAGTCGGCGTACATTAAGAACGGCTCCT 325
                     ************************************************************

consensus_103#0      CGAAGCTCGATACGTTCCGCAACTGGAGCATTACGACGTACAAATGCACCAAACAGATTA 416
consensus_103#1      CGAAGCTCGATACGTTCCGCAACTGGAGCATTACCACGTACAAATGCACCAAACAGATTA 385
                     ********************************** *************************

consensus_103#0      TGCTGGAGAAGCTGGGCAAATCGACGCGCACGGTCGATCTCGAGCTCGAGGCGCAGATCG 476
consensus_103#1      TGCTGGAGAAGCTAGGCAAATCGACGCGCACGGTCGATCTCGAGCTCGAGGCGCAGATTG 445
                     ************* ******************************************** *

consensus_103#0      ACCAGCTGAAGGAGACGCAGAAAAAGTATCTCAGCATATTGCGCCTGTCGCGCGCATTCA 536
consensus_103#1      ACCAGCTGAAGGAGACGCAGAAAAAGTATCTCAGCATATTGCGCCTGTCGCGCGCCTTCA 505
                     ******************************************************* ****

consensus_103#0      CGTCCCACTTTTACAACTGCATGCAAACCCAGAGCCTGCTGTCGGAAACATTTGCCGACC 596
consensus_103#1      CGTCCCACTTTTACAACTGCATGCAAACCCAGAGCCTGCTGTCGGAAACATTTGCCGACC 565
                     ************************************************************

consensus_103#0      TGGCACAAAAGAGTCCGGAACTGCAGGAGGAGTTTCTGCGGAACGCCGAAACGCAGCGGA 656
consensus_103#1      TGGCACAAAAGAGTCCGGAACTGCAGGAGGAGTTTCTGCGGAACGCCGAAACGCAGCGGA 625
                     ************************************************************

consensus_103#0      TC-------------------- 658
consensus_103#1      TCCTGACCAAGAACGGCGAGCT 647
                     **