cluster # 1041

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Anopheles gambiae
cluster # 1041 cluster # 1041 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1041#0 length = 441 sequences # 1

consensus_1041#1 length = 297 sequences # 1

consensusID : consensus_1041#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence

                              [CCGCCCACGCGTCCGCGAAAACCCGCGAAGAACAGTTCTGGGTGCCGATACTGGCCCAAGCTCATCGACAGTACGGTTCAGGGCGCACGGAGCTAACGGCAAAGGTGCTGTACCTGTCGTGTGTCATGCACTACCCACTGTACGGCACGACGATGTTCGCCGTGTCCTACCGTGGCTATTGGAGCTATGGCAACAGTCTCATACTCGGCGTGAACTGCGAGGGTATCATCCTGATCAAGCCGGACGACAAGTTCGTGCTGTACGAGTTCCGGTACGCCGAGGTGGAGTCGATCATGCTCGATCCGAGCGACAGCTTCATCACGATCAGCCTGAACCGGCACACCAGCACCGGCAGCGCCGATCAGCAGCGGTGCTTCGTGTTCGAGACGGCGCAGAAGAACGAGATCGGCTCGCTGATCGTGTCCTACTATCCCGCCCTTT]

[+] EMBL BM624947             [CCGCCCACGCGTCCGCGAAAACCCGCGAAGAACAGTTCTGGGTGCCGATACTGGCCCAAGCTCATCGACAGTACGGTTCAGGGCGCACGGAGCTAACGGCAAAGGTGCTGTACCTGTCGTGTGTCATGCACTACCCACTGTACGGCACGACGATGTTCGCCGTGTCCTACCGTGGCTATTGGAGCTATGGCAACAGTCTCATACTCGGCGTGAACTGCGAGGGTATCATCCTGATCAAGCCGGACGACAAGTTCGTGCTGTACGAGTTCCGGTACGCCGAGGTGGAGTCGATCATGCTCGATCCGAGCGACAGCTTCATCACGATCAGCCTGAACCGGCACACCAGCACCGGCAGCGCCGATCAGCAGCGGTGCTTCGTGTTCGAGACGGCGCAGAAGAACGAGATCGGCTCGCTGATCGTGTCCTACTATCCCGCCCTTT]




>consensus_1041#0
CCGCCCACGCGTCCGCGAAAACCCGCGAAGAACAGTTCTGGGTGCCGATACTGGCCCAAG
CTCATCGACAGTACGGTTCAGGGCGCACGGAGCTAACGGCAAAGGTGCTGTACCTGTCGT
GTGTCATGCACTACCCACTGTACGGCACGACGATGTTCGCCGTGTCCTACCGTGGCTATT
GGAGCTATGGCAACAGTCTCATACTCGGCGTGAACTGCGAGGGTATCATCCTGATCAAGC
CGGACGACAAGTTCGTGCTGTACGAGTTCCGGTACGCCGAGGTGGAGTCGATCATGCTCG
ATCCGAGCGACAGCTTCATCACGATCAGCCTGAACCGGCACACCAGCACCGGCAGCGCCG
ATCAGCAGCGGTGCTTCGTGTTCGAGACGGCGCAGAAGAACGAGATCGGCTCGCTGATCG
TGTCCTACTATCCCGCCCTTT

consensusID : consensus_1041#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 297
fasta sequence

                              [CTCACTGATCGTGTCCTACTATCCCGCCCTTTCGAACTGGATCACCGAGAACGAGGTGCCGCCGAAGAAGAGCAAGGGCATCACGAACGAGGACCGGGTCCGACTGCACCACAACCTGGTCGTCTGCCGGCGCCACCTGGTCGATACGGAGCTGCTGCGCAAACCGCAGGACCCGAGCGGTGGCTTCCTGCGCAACACGCTGCGCCGGCTGTCGAAGCATCGGCTTGAGAAGCTGCGGGCCGAGCACGGCAGCCCGGTTCACGACCACGGCGAAACGTACAAGGGCTTCCCGCACGC]

[+] EMBL AGA282944            [CTCACTGATCGTGTCCTACTATCCCGCCCTTTCGAACTGGATCACCGAGAACGAGGTGCCGCCGAAGAAGAGCAAGGGCATCACGAACGAGGACCGGGTCCGACTGCACCACAACCTGGTCGTCTGCCGGCGCCACCTGGTCGATACGGAGCTGCTGCGCAAACCGCAGGACCCGAGCGGTGGCTTCCTGCGCAACACGCTGCGCCGGCTGTCGAAGCATCGGCTTGAGAAGCTGCGGGCCGAGCACGGCAGCCCGGTTCACGACCACGGCGAAACGTACAAGGGCTTCCCGCACGC]




>consensus_1041#1
CTCACTGATCGTGTCCTACTATCCCGCCCTTTCGAACTGGATCACCGAGAACGAGGTGCC
GCCGAAGAAGAGCAAGGGCATCACGAACGAGGACCGGGTCCGACTGCACCACAACCTGGT
CGTCTGCCGGCGCCACCTGGTCGATACGGAGCTGCTGCGCAAACCGCAGGACCCGAGCGG
TGGCTTCCTGCGCAACACGCTGCGCCGGCTGTCGAAGCATCGGCTTGAGAAGCTGCGGGC
CGAGCACGGCAGCCCGGTTCACGACCACGGCGAAACGTACAAGGGCTTCCCGCACGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1041#0      CCGCCCACGCGTCCGCGAAAACCCGCGAAGAACAGTTCTGGGTGCCGATACTGGCCCAAG 60
consensus_1041#1      ------------------------------------------------------------
                                                                                  

consensus_1041#0      CTCATCGACAGTACGGTTCAGGGCGCACGGAGCTAACGGCAAAGGTGCTGTACCTGTCGT 120
consensus_1041#1      ------------------------------------------------------------
                                                                                  

consensus_1041#0      GTGTCATGCACTACCCACTGTACG-GCACGACGATGTTCGCCGTGTCCTACCGTGGCTAT 179
consensus_1041#1      -------------CTCACTGATCGTGTCCTACTAT-CCCGCCCTTTCGAACTG-GATCAC 45
                                   * *****  ** *  * ** **   **** * **  ** * *   * 

consensus_1041#0      TGGAGCTATGGCAACAGTCTCATACTCGGCGTGAACTGCGAGGGTATCATCCTGATCAAG 239
consensus_1041#1      CGAGAACGAGGTGCCG--CCGAAGAAGAGCAAGGGCATCACGAACGAGGACCGGGTCCGA 103
                       *       **   *   *  *      **  *  *  *  *        ** * **   

consensus_1041#0      CCGGACGACAAGTTCGTGCTGTACGAGTTCCGGTACGCCGAGGTGGAGTCGATCATGCTC 299
consensus_1041#1      CTGCACCACAACCTGGTCGTCTGCCGGCGCCACCTGGTCGATACGGAGCTGCT---GCGC 160
                      * * ** ****  * **  * * *  *  **     * ***   ****  * *   ** *

consensus_1041#0      GATCCGAGCGACA-GCTTCATCACGATCAGCCTGAACCGGCACACCAGCACCGGCAGCGC 358
consensus_1041#1      AAACCGCAGGACCCGAGCGGTGGCTTCCTGCGCAACACGCTGCGCCGGCTGTCGAAGCAT 220
                       * ***   ***  *     *  *   * **   *  **   * ** **    * ***  

consensus_1041#0      CGATCAGCAGCGGTGCTTCGTGTTCGAGACGGCGCAGAAGAACGAGATCGGCTCGCTGAT 418
consensus_1041#1      CGGCTT---GAGAAGCTGCGGGCCGAGCACGGCAGCCCGGTTCACGACCA--CGGCGAAA 275
                      **       * *  *** ** *      *****      *  *  ** *     **  * 

consensus_1041#0      CGTGTCCTACTATCCCGCCCTTT 441
consensus_1041#1      CGTACAAGGGCTTCCCGCACGC- 297
                      ***         ****** *