cluster # 1042

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Anopheles gambiae
cluster # 1042 cluster # 1042 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1042#0 length = 214 sequences # 1

consensus_1042#1 length = 115 sequences # 1

consensusID : consensus_1042#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 214
fasta sequence

                              [AAAAAAAGGGTAATAAAAACCCCCCCAAAAAAATCCCATTTCTCTTCAAAGATGGTAATGAGAAAGGGTTTAAGGATGTTTTTGTAAACCTTTTTTTTTATGTTTTTTTCCCCCGGGGTTTGGTTGGTTTGTTTTAGGGAGAGAGAATATTGTTTTTTTTCGGGGTAGATAAAATTAAGGGGGAGATAAAAAGAAAGAAAAAAATCCAAAAAAA]

[+] EMBL CNS09ASB             [AAAAAAAGGGTAATAAAAACCCCCCCAAAAAAATCCCATTTCTCTTCAAAGATGGTAATGAGAAAGGGTTTAAGGATGTTTTTGTAAACCTTTTTTTTTATGTTTTTTTCCCCCGGGGTTTGGTTGGTTTGTTTTAGGGAGAGAGAATATTGTTTTTTTTCGGGGTAGATAAAATTAAGGGGGAGATAAAAAGAAAGAAAAAAATCCAAAAAAA]




>consensus_1042#0
AAAAAAAGGGTAATAAAAACCCCCCCAAAAAAATCCCATTTCTCTTCAAAGATGGTAATG
AGAAAGGGTTTAAGGATGTTTTTGTAAACCTTTTTTTTTATGTTTTTTTCCCCCGGGGTT
TGGTTGGTTTGTTTTAGGGAGAGAGAATATTGTTTTTTTTCGGGGTAGATAAAATTAAGG
GGGAGATAAAAAGAAAGAAAAAAATCCAAAAAAA

consensusID : consensus_1042#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 115
fasta sequence

                              [TGTTTTTTTTTGGGGGGTTTGGTTGGTTTGTTTTAGGGAGAGAGATTATTGTTTTTTTTGGGGGTAGATAAAATTAAGGGGGAGATAAAAAGAAGGAAAAAAATTAAAAAAAAAA]

[+] EMBL CNS08N6X             [TGTTTTTTTTTGGGGGGTTTGGTTGGTTTGTTTTAGGGAGAGAGATTATTGTTTTTTTTGGGGGTAGATAAAATTAAGGGGGAGATAAAAAGAAGGAAAAAAATTAAAAAAAAAA]




>consensus_1042#1
TGTTTTTTTTTGGGGGGTTTGGTTGGTTTGTTTTAGGGAGAGAGATTATTGTTTTTTTTG
GGGGTAGATAAAATTAAGGGGGAGATAAAAAGAAGGAAAAAAATTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1042#0      AAAAAAAGGGTAATAAAAACCCCCCCAAAAAAATCCCATTTCTCTTCAAAGATGGTAATG 60
consensus_1042#1      ------------------------------------------------------------
                                                                                  

consensus_1042#0      AGAAAGGGTTTAAGGATGTTTTTGTAAACCTTTTTTTTTATGTTTTTTTCCCCCGGGGTT 120
consensus_1042#1      ----------------------------------------TGTTTTTTTTTGG-GGGGTT 19
                                                              *********     ******

consensus_1042#0      TGGTTGGTTTGTTTTAGGGAGAGAGAATATTGTTTTTTTTCGGGGTAGATAAAATTAAGG 180
consensus_1042#1      TGGTTGGTTTGTTTTAGGGAGAGAGATTATTGTTTTTTTTGGGGGTAGATAAAATTAAGG 79
                      ************************** ************* *******************

consensus_1042#0      GGGAGATAAAAAGAAAGAAAAAAATCCAAAAAAA-- 214
consensus_1042#1      GGGAGATAAAAAGAAGGAAAAAAATTAAAAAAAAAA 115
                      *************** *********  *******