cluster # 1057

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Anopheles gambiae
cluster # 1057 cluster # 1057 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1057#0 length = 618 sequences # 1

consensus_1057#1 length = 144 sequences # 1

consensusID : consensus_1057#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence

                              [CCGGGTTTTTGTGCGCGAGGCTGGTAGCAAAGCCAGAAAAGCAAGAAGAAAAAAAGCGGTTGCGGTTCTGCGTATTGCATTAACAGTGCGTGTACAGGCCAAACGATAATACCACGCCGAAGGGAGCCGCCAGCAGCAGGCAGCGCGGATTAAGTAATTACTGAAGAACAAATGGATGTAGGACGACTACCAATTCGAACGCGTCTTCTTAATTTCATGTTGTGCCAATCACTGGAACGGTGAAGCAAACTTGTGCAAAACAGAAACAGGTATCGTTCGCTTTGAATCCTGCACGATCGCTTCCCATTTTTGGCAGCCGAGTAGATCGAACCGCGCATCGAGAGTAGCGCATCCGTCGGGGCGTATTCAGCTGACAGCTTGACGGTCGATCGCCACAAACAGGATGCTTTAGAACAGCCTGGCCACGAACATTGGGAAGCAGAAATACGATAAACCAAACCAAAAACAACAAAAAACGAGGAAACCAACAAAAACGATATCAACAACACCTTACTGAACTCGTGCGCAACGAACGATACGGTCGGCAGCAAAGTGCACCGCGGGCTTGATGCTGCTGCTGCTGCTGGACTGCAGCTAGTTTTGCCCCTCCACCATCAC]

[+] EMBL BM575082             [CCGGGTTTTTGTGCGCGAGGCTGGTAGCAAAGCCAGAAAAGCAAGAAGAAAAAAAGCGGTTGCGGTTCTGCGTATTGCATTAACAGTGCGTGTACAGGCCAAACGATAATACCACGCCGAAGGGAGCCGCCAGCAGCAGGCAGCGCGGATTAAGTAATTACTGAAGAACAAATGGATGTAGGACGACTACCAATTCGAACGCGTCTTCTTAATTTCATGTTGTGCCAATCACTGGAACGGTGAAGCAAACTTGTGCAAAACAGAAACAGGTATCGTTCGCTTTGAATCCTGCACGATCGCTTCCCATTTTTGGCAGCCGAGTAGATCGAACCGCGCATCGAGAGTAGCGCATCCGTCGGGGCGTATTCAGCTGACAGCTTGACGGTCGATCGCCACAAACAGGATGCTTTAGAACAGCCTGGCCACGAACATTGGGAAGCAGAAATACGATAAACCAAACCAAAAACAACAAAAAACGAGGAAACCAACAAAAACGATATCAACAACACCTTACTGAACTCGTGCGCAACGAACGATACGGTCGGCAGCAAAGTGCACCGCGGGCTTGATGCTGCTGCTGCTGCTGGACTGCAGCTAGTTTTGCCCCTCCACCATCAC]




>consensus_1057#0
CCGGGTTTTTGTGCGCGAGGCTGGTAGCAAAGCCAGAAAAGCAAGAAGAAAAAAAGCGGT
TGCGGTTCTGCGTATTGCATTAACAGTGCGTGTACAGGCCAAACGATAATACCACGCCGA
AGGGAGCCGCCAGCAGCAGGCAGCGCGGATTAAGTAATTACTGAAGAACAAATGGATGTA
GGACGACTACCAATTCGAACGCGTCTTCTTAATTTCATGTTGTGCCAATCACTGGAACGG
TGAAGCAAACTTGTGCAAAACAGAAACAGGTATCGTTCGCTTTGAATCCTGCACGATCGC
TTCCCATTTTTGGCAGCCGAGTAGATCGAACCGCGCATCGAGAGTAGCGCATCCGTCGGG
GCGTATTCAGCTGACAGCTTGACGGTCGATCGCCACAAACAGGATGCTTTAGAACAGCCT
GGCCACGAACATTGGGAAGCAGAAATACGATAAACCAAACCAAAAACAACAAAAAACGAG
GAAACCAACAAAAACGATATCAACAACACCTTACTGAACTCGTGCGCAACGAACGATACG
GTCGGCAGCAAAGTGCACCGCGGGCTTGATGCTGCTGCTGCTGCTGGACTGCAGCTAGTT
TTGCCCCTCCACCATCAC

consensusID : consensus_1057#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 144
fasta sequence

                              [CGCGGGCTTGATGCTGCTGCTGGACTGCAGCTAGTTTTGCCCCCTCCACCATCACCAGCATCGCTTATTCTTTTCATCTTGTGCACGATCGCGCTCCACCGCCCTTGCACCAGACACCATTCGCTCGATTCGGCTCGGCTGCTG]

[+] EMBL AGA283141            [CGCGGGCTTGATGCTGCTGCTGGACTGCAGCTAGTTTTGCCCCCTCCACCATCACCAGCATCGCTTATTCTTTTCATCTTGTGCACGATCGCGCTCCACCGCCCTTGCACCAGACACCATTCGCTCGATTCGGCTCGGCTGCTG]




>consensus_1057#1
CGCGGGCTTGATGCTGCTGCTGGACTGCAGCTAGTTTTGCCCCCTCCACCATCACCAGCA
TCGCTTATTCTTTTCATCTTGTGCACGATCGCGCTCCACCGCCCTTGCACCAGACACCAT
TCGCTCGATTCGGCTCGGCTGCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1057#0      CCGGGTTTTTGTGCGCGAGGCTGGTAGCAAAGCCAGAAAAGCAAGAAGAAAAAAAGCGGT 60
consensus_1057#1      ------------------------------------------------------------
                                                                                  

consensus_1057#0      TGCGGTTCTGCGTATTGCATTAACAGTGCGTGTACAGGCCAAACGATAATACCACGCCGA 120
consensus_1057#1      ------------------------------------------------------------
                                                                                  

consensus_1057#0      AGGGAGCCGCCAGCAGCAGGCAGCGCGGATTAAGTAATTACTGAAGAACAAATGGATGTA 180
consensus_1057#1      ---------------------CGCGGGCTTGATGCTGCTGCTGGACTGCAGCTAGTTTTG 39
                                            *** *  * * *    * *** *   **  * * * * 

consensus_1057#0      GGACGACTACCAATTCGAACGCGTCTTCTTAATTTCATGTTGTGCCAATCACTGGAACGG 240
consensus_1057#1      CCCCCTCCACCATCACCAGCATCGCTTATTCTTTTCATCTTGTGC-----ACGATCGCGC 94
                         *  * ****   * * *    *** **  ****** ******     **     ** 

consensus_1057#0      TGAAGCAAACTTGTGCAAAACAGAAACAGGTATCGTTCGCTTTGAATCCTGCACGATCGC 300
consensus_1057#1      TCCACCGCCCTTGCAC----------CAGACACCATTCGCTC--GATTCGGCTCGGCTGC 142
                      *  * *   ****  *          ***  * * ******    ** * ** **   **

consensus_1057#0      TTCCCATTTTTGGCAGCCGAGTAGATCGAACCGCGCATCGAGAGTAGCGCATCCGTCGGG 360
consensus_1057#1      TG---------------------------------------------------------- 144
                      *                                                           

consensus_1057#0      GCGTATTCAGCTGACAGCTTGACGGTCGATCGCCACAAACAGGATGCTTTAGAACAGCCT 420
consensus_1057#1      ------------------------------------------------------------
                                                                                  

consensus_1057#0      GGCCACGAACATTGGGAAGCAGAAATACGATAAACCAAACCAAAAACAACAAAAAACGAG 480
consensus_1057#1      ------------------------------------------------------------
                                                                                  

consensus_1057#0      GAAACCAACAAAAACGATATCAACAACACCTTACTGAACTCGTGCGCAACGAACGATACG 540
consensus_1057#1      ------------------------------------------------------------
                                                                                  

consensus_1057#0      GTCGGCAGCAAAGTGCACCGCGGGCTTGATGCTGCTGCTGCTGCTGGACTGCAGCTAGTT 600
consensus_1057#1      ------------------------------------------------------------
                                                                                  

consensus_1057#0      TTGCCCCTCCACCATCAC 618
consensus_1057#1      ------------------