cluster # 1066

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Anopheles gambiae
cluster # 1066 cluster # 1066 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1066#0 length = 1481 sequences # 1

consensus_1066#1 length = 242 sequences # 1

consensusID : consensus_1066#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1481
fasta sequence

                              [GGGGGNCCAGATGGACGCTGCGAGGAATGTGGAATCACTTCGGAGCAGATTAGCTTAAACTTCCTGGTCCCCCTCGTTCGTCGTCGAGTGCACTTGGTTGTCCGCTTTCGATACTTTTTGCTTTCCCCAAGTCCCCTGGTNTGTGAACCTCGTGTTGTTNAAGCCTCCGATTTGGGCGCCTTGCGAGGGTTTTCCTCCAGGTTCCCCTGGTAAGGTTCAAATAGGCCTGGCGGTCNGTGGCAAATTAACCTTTTAAGCAAACCCTTAAATACTTGGGGGTTAAATTAAAAAAGGCAAGGTGGAACCTGNGTTTGGNTTGNTTGGAAACTGGCCAATTTCGGAGTTAATTTGCCCTTAAAAAATGGGCCTTNGAACCGGTTGTTAAANCGTTAAACACTTTTGGGGGGTTTTGGCCAAAGAGCTTTCCCTTACGGGGGGGGGGTTGGCCAATATCCTTAGGGGGTTGAACACTTAAACNGGACTTAAAACCNGGTTTGGCCGGTATTATGGTTNGGTTAACCCANTTTATACACAAAACCCTGCTGGGCTCCCACAGGTTATTGCNTGTAAACCATGGGCCCAGAATAGAGAATAAACTGTGAAACCATGGTTTTTGAAAAGCCTTGTNGGGNCGGGAAAAACTCTGTGTGCGNCTNATATGAGGGTTTATTGCCCNANAAGTTAACATTTAACAGGTTTGGGGTCAATTTTNAANCCGTGGTGGGGAAGAAAANAAGCACAGAAAAGTTTCTTTTNTAAAAAAGNCAAAACAAATAGCGTGGAAAAAAAGGGGCAANGANGGGGGGCCGTTTTAAAGAGGAAAGATTTTTTTTCCCCAACAATGGAAAGGTTGGGTTTTTTTGGGACAGACAACACAGGAGGGGGGGGGTTTTTTAACAACATTACTATTTCAACCTTTTNGGGGGGGGTGTTTGGGGCCGGTTTTTNAAAAACCCCTNGGGGNAGANGTTTTAAGCGGGGGNACAACACCAGGNTGGNTGTGGGCCGACCACCAACCACATACACNCCCCCCCAACCTTNTTTTTTCTNGGGGGGGGCCCACGACCNATCTACTTTTCAAACAAACAAGACCCGCCAAACAAAAATACGTTTTTCNAACANCGGGGACANAAGAACAACCCCCCTTNTTGTGGTGGTGGTCGCAACACACGTTGGNGCCGTACAGCAACCAACTGAGGTCCGCCCCCACAACAGGANGGTTTCGTTAACAAACCCCCCGCACAAGCANGCTTTCTATTCTCTGGGGTGGAGNCAGCGGGCGAAAAAACATCNCCGCAAAACCCCCCGGGTGGGTGGTGACGTGGGGCAACACCCATTNTTNTTCCCCGCACGTAGGAGCGGCGCTGTGTGTAGAAANACCCCCCAACAGAAGAGGGCGAGAAGCCCGCCAANGACAACGACGTGGGTGTGGGNCTCGCCAACAACAAAGAGCCGCCACAGAACAAACGGTATTCCCCCCG]

[+] EMBL AL931963             [GGGGGNCCAGATGGACGCTGCGAGGAATGTGGAATCACTTCGGAGCAGATTAGCTTAAACTTCCTGGTCCCCCTCGTTCGTCGTCGAGTGCACTTGGTTGTCCGCTTTCGATACTTTTTGCTTTCCCCAAGTCCCCTGGTNTGTGAACCTCGTGTTGTTNAAGCCTCCGATTTGGGCGCCTTGCGAGGGTTTTCCTCCAGGTTCCCCTGGTAAGGTTCAAATAGGCCTGGCGGTCNGTGGCAAATTAACCTTTTAAGCAAACCCTTAAATACTTGGGGGTTAAATTAAAAAAGGCAAGGTGGAACCTGNGTTTGGNTTGNTTGGAAACTGGCCAATTTCGGAGTTAATTTGCCCTTAAAAAATGGGCCTTNGAACCGGTTGTTAAANCGTTAAACACTTTTGGGGGGTTTTGGCCAAAGAGCTTTCCCTTACGGGGGGGGGGTTGGCCAATATCCTTAGGGGGTTGAACACTTAAACNGGACTTAAAACCNGGTTTGGCCGGTATTATGGTTNGGTTAACCCANTTTATACACAAAACCCTGCTGGGCTCCCACAGGTTATTGCNTGTAAACCATGGGCCCAGAATAGAGAATAAACTGTGAAACCATGGTTTTTGAAAAGCCTTGTNGGGNCGGGAAAAACTCTGTGTGCGNCTNATATGAGGGTTTATTGCCCNANAAGTTAACATTTAACAGGTTTGGGGTCAATTTTNAANCCGTGGTGGGGAAGAAAANAAGCACAGAAAAGTTTCTTTTNTAAAAAAGNCAAAACAAATAGCGTGGAAAAAAAGGGGCAANGANGGGGGGCCGTTTTAAAGAGGAAAGATTTTTTTTCCCCAACAATGGAAAGGTTGGGTTTTTTTGGGACAGACAACACAGGAGGGGGGGGGTTTTTTAACAACATTACTATTTCAACCTTTTNGGGGGGGGTGTTTGGGGCCGGTTTTTNAAAAACCCCTNGGGGNAGANGTTTTAAGCGGGGGNACAACACCAGGNTGGNTGTGGGCCGACCACCAACCACATACACNCCCCCCCAACCTTNTTTTTTCTNGGGGGGGGCCCACGACCNATCTACTTTTCAAACAAACAAGACCCGCCAAACAAAAATACGTTTTTCNAACANCGGGGACANAAGAACAACCCCCCTTNTTGTGGTGGTGGTCGCAACACACGTTGGNGCCGTACAGCAACCAACTGAGGTCCGCCCCCACAACAGGANGGTTTCGTTAACAAACCCCCCGCACAAGCANGCTTTCTATTCTCTGGGGTGGAGNCAGCGGGCGAAAAAACATCNCCGCAAAACCCCCCGGGTGGGTGGTGACGTGGGGCAACACCCATTNTTNTTCCCCGCACGTAGGAGCGGCGCTGTGTGTAGAAANACCCCCCAACAGAAGAGGGCGAGAAGCCCGCCAANGACAACGACGTGGGTGTGGGNCTCGCCAACAACAAAGAGCCGCCACAGAACAAACGGTATTCCCCCCG]




>consensus_1066#0
GGGGGNCCAGATGGACGCTGCGAGGAATGTGGAATCACTTCGGAGCAGATTAGCTTAAAC
TTCCTGGTCCCCCTCGTTCGTCGTCGAGTGCACTTGGTTGTCCGCTTTCGATACTTTTTG
CTTTCCCCAAGTCCCCTGGTNTGTGAACCTCGTGTTGTTNAAGCCTCCGATTTGGGCGCC
TTGCGAGGGTTTTCCTCCAGGTTCCCCTGGTAAGGTTCAAATAGGCCTGGCGGTCNGTGG
CAAATTAACCTTTTAAGCAAACCCTTAAATACTTGGGGGTTAAATTAAAAAAGGCAAGGT
GGAACCTGNGTTTGGNTTGNTTGGAAACTGGCCAATTTCGGAGTTAATTTGCCCTTAAAA
AATGGGCCTTNGAACCGGTTGTTAAANCGTTAAACACTTTTGGGGGGTTTTGGCCAAAGA
GCTTTCCCTTACGGGGGGGGGGTTGGCCAATATCCTTAGGGGGTTGAACACTTAAACNGG
ACTTAAAACCNGGTTTGGCCGGTATTATGGTTNGGTTAACCCANTTTATACACAAAACCC
TGCTGGGCTCCCACAGGTTATTGCNTGTAAACCATGGGCCCAGAATAGAGAATAAACTGT
GAAACCATGGTTTTTGAAAAGCCTTGTNGGGNCGGGAAAAACTCTGTGTGCGNCTNATAT
GAGGGTTTATTGCCCNANAAGTTAACATTTAACAGGTTTGGGGTCAATTTTNAANCCGTG
GTGGGGAAGAAAANAAGCACAGAAAAGTTTCTTTTNTAAAAAAGNCAAAACAAATAGCGT
GGAAAAAAAGGGGCAANGANGGGGGGCCGTTTTAAAGAGGAAAGATTTTTTTTCCCCAAC
AATGGAAAGGTTGGGTTTTTTTGGGACAGACAACACAGGAGGGGGGGGGTTTTTTAACAA
CATTACTATTTCAACCTTTTNGGGGGGGGTGTTTGGGGCCGGTTTTTNAAAAACCCCTNG
GGGNAGANGTTTTAAGCGGGGGNACAACACCAGGNTGGNTGTGGGCCGACCACCAACCAC
ATACACNCCCCCCCAACCTTNTTTTTTCTNGGGGGGGGCCCACGACCNATCTACTTTTCA
AACAAACAAGACCCGCCAAACAAAAATACGTTTTTCNAACANCGGGGACANAAGAACAAC
CCCCCTTNTTGTGGTGGTGGTCGCAACACACGTTGGNGCCGTACAGCAACCAACTGAGGT
CCGCCCCCACAACAGGANGGTTTCGTTAACAAACCCCCCGCACAAGCANGCTTTCTATTC
TCTGGGGTGGAGNCAGCGGGCGAAAAAACATCNCCGCAAAACCCCCCGGGTGGGTGGTGA
CGTGGGGCAACACCCATTNTTNTTCCCCGCACGTAGGAGCGGCGCTGTGTGTAGAAANAC
CCCCCAACAGAAGAGGGCGAGAAGCCCGCCAANGACAACGACGTGGGTGTGGGNCTCGCC
AACAACAAAGAGCCGCCACAGAACAAACGGTATTCCCCCCG

consensusID : consensus_1066#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 242
fasta sequence

                              [GTGGAATTCACTTCGGAGCAGATTAGCTTAAACTTCCTGTCCCCCTCGTTCGWCGTCGAGTGCACTTGTGTCGCTTTCGATATTTTGCTTCCCAGTCCCGTGGGACCGTGTGTGAGCTCGATTGGGCCTGCAGTTTCTCGTTCCCGTAGTCAAGCCGCGTCGGCAATACTTACCACCCTAATCTGCGTAATAAAAGAGGGACTGGTGGTGTGAACGCATCGATATGCCTAACGCTGACGTGT]

[+] EMBL AGA283208            [GTGGAATTCACTTCGGAGCAGATTAGCTTAAACTTCCTGTCCCCCTCGTTCGWCGTCGAGTGCACTTGTGTCGCTTTCGATATTTTGCTTCCCAGTCCCGTGGGACCGTGTGTGAGCTCGATTGGGCCTGCAGTTTCTCGTTCCCGTAGTCAAGCCGCGTCGGCAATACTTACCACCCTAATCTGCGTAATAAAAGAGGGACTGGTGGTGTGAACGCATCGATATGCCTAACGCTGACGTGT]




>consensus_1066#1
GTGGAATTCACTTCGGAGCAGATTAGCTTAAACTTCCTGTCCCCCTCGTTCGWCGTCGAG
TGCACTTGTGTCGCTTTCGATATTTTGCTTCCCAGTCCCGTGGGACCGTGTGTGAGCTCG
ATTGGGCCTGCAGTTTCTCGTTCCCGTAGTCAAGCCGCGTCGGCAATACTTACCACCCTA
ATCTGCGTAATAAAAGAGGGACTGGTGGTGTGAACGCATCGATATGCCTAACGCTGACGT
GT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1066#0      GGGGGNCCAGATGGACGCTGCGAGGAATGTGGAAT-CACTTCGGAGCAGATTAGCTTAAA 59
consensus_1066#1      ----------------------------GTGGAATTCACTTCGGAGCAGATTAGCTTAAA 32
                                                  ******* ************************

consensus_1066#0      CTTCCTGGTCCCCCTCGTTCGTCGTCGAGTGCACTTGGTTGTCCGCTTTCGATACTTTTT 119
consensus_1066#1      CTTCCTG-TCCCCCTCGTTCGWCGTCGAGTGCACTTG--TGTC-GCTTTCGATA--TTTT 86
                      ******* ************* ***************  **** **********  ****

consensus_1066#0      GCTTTCCCCAAGTCCCCTGGTNTGTGAACCTCGTGTTGTTNAAGCCTCCGATTTGGGCGC 179
consensus_1066#1      GCTTCCC---AGTCCCGTGG------GACCGTGTGT-----GAGCT--CGATTGGG---- 126
                      **** **   ****** ***       ***  ****      ***   ***** **    

consensus_1066#0      CTTGCGAGGGTTTTCCTCCAGGTTCCCCTGGTAAGGTTCAAATAGGCCTGGCGGTCNGTG 239
consensus_1066#1      CCTGCAG-----TTTCTC---GTTCCCGTAGT------CAAGCCGCGTCGGCAATACTTA 172
                      * ***       ** ***   ****** * **      ***   *    ***  *   * 

consensus_1066#0      GCAAATTAACCTTTTAAGCAAACCCTTAAATACTTGGGGGTTAAATTAAAAAAGGCAAGG 299
consensus_1066#1      CCACCCTAATCTGCGTAATAAA----AGAGGGACTGGTGGT-------GTGAACGCATCG 221
                       **   *** **    *  ***      *     *** ***          ** ***  *

consensus_1066#0      TGGAACCTGNGTTTGGNTTGNTTGGAAACTGGCCAATTTCGGAGTTAATTTGCCCTTAAA 359
consensus_1066#1      ATATGCCTAACGCTGACGTGT--------------------------------------- 242
                           ***     **   **                                        

consensus_1066#0      AAATGGGCCTTNGAACCGGTTGTTAAANCGTTAAACACTTTTGGGGGGTTTTGGCCAAAG 419
consensus_1066#1      ------------------------------------------------------------
                                                                                  

consensus_1066#0      AGCTTTCCCTTACGGGGGGGGGGTTGGCCAATATCCTTAGGGGGTTGAACACTTAAACNG 479
consensus_1066#1      ------------------------------------------------------------
                                                                                  

consensus_1066#0      GACTTAAAACCNGGTTTGGCCGGTATTATGGTTNGGTTAACCCANTTTATACACAAAACC 539
consensus_1066#1      ------------------------------------------------------------
                                                                                  

consensus_1066#0      CTGCTGGGCTCCCACAGGTTATTGCNTGTAAACCATGGGCCCAGAATAGAGAATAAACTG 599
consensus_1066#1      ------------------------------------------------------------
                                                                                  

consensus_1066#0      TGAAACCATGGTTTTTGAAAAGCCTTGTNGGGNCGGGAAAAACTCTGTGTGCGNCTNATA 659
consensus_1066#1      ------------------------------------------------------------
                                                                                  

consensus_1066#0      TGAGGGTTTATTGCCCNANAAGTTAACATTTAACAGGTTTGGGGTCAATTTTNAANCCGT 719
consensus_1066#1      ------------------------------------------------------------
                                                                                  

consensus_1066#0      GGTGGGGAAGAAAANAAGCACAGAAAAGTTTCTTTTNTAAAAAAGNCAAAACAAATAGCG 779
consensus_1066#1      ------------------------------------------------------------
                                                                                  

consensus_1066#0      TGGAAAAAAAGGGGCAANGANGGGGGGCCGTTTTAAAGAGGAAAGATTTTTTTTCCCCAA 839
consensus_1066#1      ------------------------------------------------------------
                                                                                  

consensus_1066#0      CAATGGAAAGGTTGGGTTTTTTTGGGACAGACAACACAGGAGGGGGGGGGTTTTTTAACA 899
consensus_1066#1      ------------------------------------------------------------
                                                                                  

consensus_1066#0      ACATTACTATTTCAACCTTTTNGGGGGGGGTGTTTGGGGCCGGTTTTTNAAAAACCCCTN 959
consensus_1066#1      ------------------------------------------------------------
                                                                                  

consensus_1066#0      GGGGNAGANGTTTTAAGCGGGGGNACAACACCAGGNTGGNTGTGGGCCGACCACCAACCA 1019
consensus_1066#1      ------------------------------------------------------------
                                                                                  

consensus_1066#0      CATACACNCCCCCCCAACCTTNTTTTTTCTNGGGGGGGGCCCACGACCNATCTACTTTTC 1079
consensus_1066#1      ------------------------------------------------------------
                                                                                  

consensus_1066#0      AAACAAACAAGACCCGCCAAACAAAAATACGTTTTTCNAACANCGGGGACANAAGAACAA 1139
consensus_1066#1      ------------------------------------------------------------
                                                                                  

consensus_1066#0      CCCCCCTTNTTGTGGTGGTGGTCGCAACACACGTTGGNGCCGTACAGCAACCAACTGAGG 1199
consensus_1066#1      ------------------------------------------------------------
                                                                                  

consensus_1066#0      TCCGCCCCCACAACAGGANGGTTTCGTTAACAAACCCCCCGCACAAGCANGCTTTCTATT 1259
consensus_1066#1      ------------------------------------------------------------
                                                                                  

consensus_1066#0      CTCTGGGGTGGAGNCAGCGGGCGAAAAAACATCNCCGCAAAACCCCCCGGGTGGGTGGTG 1319
consensus_1066#1      ------------------------------------------------------------
                                                                                  

consensus_1066#0      ACGTGGGGCAACACCCATTNTTNTTCCCCGCACGTAGGAGCGGCGCTGTGTGTAGAAANA 1379
consensus_1066#1      ------------------------------------------------------------
                                                                                  

consensus_1066#0      CCCCCCAACAGAAGAGGGCGAGAAGCCCGCCAANGACAACGACGTGGGTGTGGGNCTCGC 1439
consensus_1066#1      ------------------------------------------------------------
                                                                                  

consensus_1066#0      CAACAACAAAGAGCCGCCACAGAACAAACGGTATTCCCCCCG 1481
consensus_1066#1      ------------------------------------------