cluster # 1098

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Anopheles gambiae
cluster # 1098 cluster # 1098 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1098#0 length = 601 sequences # 1

consensus_1098#1 length = 600 sequences # 1

consensusID : consensus_1098#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTTGAAAAGGGCTAAGGGGCGTGTGTGGAGTAGCAACTCAGAGCAAACTCAGTGAAGCAAAAAGGTCTCTGCAATCTTCCATTAATGTGGAAACACACAGACACACACCCGCTTGCAGGACAGGAAACGGAATTTCAGTTCCCAGGATTCAGTTCCCAGGAGTGTTTGTAAACTGAATGATAATAAGGAAGCCAGAACACACAAAGAAATAAAGCGGAAATCATGGATAAAACAAATACAAGTCGTGACAAGCCGTATCAAAGCTGCAGAGGCGTCGAGCATTGGGCAAATGCTCCATGGTAAAATTTGTTTTTTTTTTGTTTATGATAGTTACACAACATCAGGCTTTTTTTAATTTACCTTTTTTCCCCCTATAGTACTTTCCATAGACACACTTACTTTCCATAGACAGTTCAGGTGTGTCCGTCTCTGTGTGTGTGTGTGTTTGTGTGTTTCCATAAGGCAAAGTGAAGTGGATGGAAGGGTTTAAATTATATACGTAAGGATGTGTTTGTGTGTGTCTGATAGTGTAAAGGAAG]

[+] EMBL BM652297             [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTTGAAAAGGGCTAAGGGGCGTGTGTGGAGTAGCAACTCAGAGCAAACTCAGTGAAGCAAAAAGGTCTCTGCAATCTTCCATTAATGTGGAAACACACAGACACACACCCGCTTGCAGGACAGGAAACGGAATTTCAGTTCCCAGGATTCAGTTCCCAGGAGTGTTTGTAAACTGAATGATAATAAGGAAGCCAGAACACACAAAGAAATAAAGCGGAAATCATGGATAAAACAAATACAAGTCGTGACAAGCCGTATCAAAGCTGCAGAGGCGTCGAGCATTGGGCAAATGCTCCATGGTAAAATTTGTTTTTTTTTTGTTTATGATAGTTACACAACATCAGGCTTTTTTTAATTTACCTTTTTTCCCCCTATAGTACTTTCCATAGACACACTTACTTTCCATAGACAGTTCAGGTGTGTCCGTCTCTGTGTGTGTGTGTGTTTGTGTGTTTCCATAAGGCAAAGTGAAGTGGATGGAAGGGTTTAAATTATATACGTAAGGATGTGTTTGTGTGTGTCTGATAGTGTAAAGGAAG]




>consensus_1098#0
CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGT
CCGTTGAAAAGGGCTAAGGGGCGTGTGTGGAGTAGCAACTCAGAGCAAACTCAGTGAAGC
AAAAAGGTCTCTGCAATCTTCCATTAATGTGGAAACACACAGACACACACCCGCTTGCAG
GACAGGAAACGGAATTTCAGTTCCCAGGATTCAGTTCCCAGGAGTGTTTGTAAACTGAAT
GATAATAAGGAAGCCAGAACACACAAAGAAATAAAGCGGAAATCATGGATAAAACAAATA
CAAGTCGTGACAAGCCGTATCAAAGCTGCAGAGGCGTCGAGCATTGGGCAAATGCTCCAT
GGTAAAATTTGTTTTTTTTTTGTTTATGATAGTTACACAACATCAGGCTTTTTTTAATTT
ACCTTTTTTCCCCCTATAGTACTTTCCATAGACACACTTACTTTCCATAGACAGTTCAGG
TGTGTCCGTCTCTGTGTGTGTGTGTGTTTGTGTGTTTCCATAAGGCAAAGTGAAGTGGAT
GGAAGGGTTTAAATTATATACGTAAGGATGTGTTTGTGTGTGTCTGATAGTGTAAAGGAA
G

consensusID : consensus_1098#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 600
fasta sequence

                              [CCGGATCTGTATAAATTGAAAAGGGCAAAGGGGCGTGTGTGGAGTAGCAACTCAGAGCAAACTCAGTGAAGCAAAAAGGTCTCTGCAATCTTCCATTAATGTGGAAACACACAGACACACACACGCTTGCAGGACAGGAAACGGAATTTGTGCAAGAAGGATTCAGTTCCCAGGAGTGTTTGGTTGTAAACTGAATGATAATAAGGAAGCCAGAAAACACAAAGAAATAAAGCGGAAATCATGGATAAAACAAATACAAGTCGTGACAAGCCGTAACAGAGCTGCAGAGGCGTCAAGCATTGGACAAAATGCTCCACTGTAAATTTTTTTTTTTTTTTTGTTTATGATAGTTACACAACATCAGGCTTTTTTTAATTTATCTTTTTCCCCCTATAGTACTTTCCATAGACACACTTCCTTTCCATAGACAGTTCAGGTGTGTCCGTCTCTGTGTGTGTGTTTGTGTGTTTCCATAAGGCAAAGTGAAGTGGATGGAAGGGTTTAAATTATATACGTAAGGATGTGTTTGTGTGTGTCAGATAGTGTAAAGGAAGAAATGAGAAATTAAGGGGGGTGCGGGGAGTAAAAAAAACTAGCCGT]

[+] EMBL BM586364             [CCGGATCTGTATAAATTGAAAAGGGCAAAGGGGCGTGTGTGGAGTAGCAACTCAGAGCAAACTCAGTGAAGCAAAAAGGTCTCTGCAATCTTCCATTAATGTGGAAACACACAGACACACACACGCTTGCAGGACAGGAAACGGAATTTGTGCAAGAAGGATTCAGTTCCCAGGAGTGTTTGGTTGTAAACTGAATGATAATAAGGAAGCCAGAAAACACAAAGAAATAAAGCGGAAATCATGGATAAAACAAATACAAGTCGTGACAAGCCGTAACAGAGCTGCAGAGGCGTCAAGCATTGGACAAAATGCTCCACTGTAAATTTTTTTTTTTTTTTTGTTTATGATAGTTACACAACATCAGGCTTTTTTTAATTTATCTTTTTCCCCCTATAGTACTTTCCATAGACACACTTCCTTTCCATAGACAGTTCAGGTGTGTCCGTCTCTGTGTGTGTGTTTGTGTGTTTCCATAAGGCAAAGTGAAGTGGATGGAAGGGTTTAAATTATATACGTAAGGATGTGTTTGTGTGTGTCAGATAGTGTAAAGGAAGAAATGAGAAATTAAGGGGGGTGCGGGGAGTAAAAAAAACTAGCCGT]




>consensus_1098#1
CCGGATCTGTATAAATTGAAAAGGGCAAAGGGGCGTGTGTGGAGTAGCAACTCAGAGCAA
ACTCAGTGAAGCAAAAAGGTCTCTGCAATCTTCCATTAATGTGGAAACACACAGACACAC
ACACGCTTGCAGGACAGGAAACGGAATTTGTGCAAGAAGGATTCAGTTCCCAGGAGTGTT
TGGTTGTAAACTGAATGATAATAAGGAAGCCAGAAAACACAAAGAAATAAAGCGGAAATC
ATGGATAAAACAAATACAAGTCGTGACAAGCCGTAACAGAGCTGCAGAGGCGTCAAGCAT
TGGACAAAATGCTCCACTGTAAATTTTTTTTTTTTTTTTGTTTATGATAGTTACACAACA
TCAGGCTTTTTTTAATTTATCTTTTTCCCCCTATAGTACTTTCCATAGACACACTTCCTT
TCCATAGACAGTTCAGGTGTGTCCGTCTCTGTGTGTGTGTTTGTGTGTTTCCATAAGGCA
AAGTGAAGTGGATGGAAGGGTTTAAATTATATACGTAAGGATGTGTTTGTGTGTGTCAGA
TAGTGTAAAGGAAGAAATGAGAAATTAAGGGGGGTGCGGGGAGTAAAAAAAACTAGCCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1098#0      CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGT 60
consensus_1098#1      ------------------------------------------------CCGGATCTGTAT 12
                                                                      ***     *  *

consensus_1098#0      CCGTTGAAAAGGGCTAAGGGGCGTGTGTGGAGTAGCAACTCAGAGCAAACTCAGTGAAGC 120
consensus_1098#1      AAATTGAAAAGGGCAAAGGGGCGTGTGTGGAGTAGCAACTCAGAGCAAACTCAGTGAAGC 72
                         *********** *********************************************

consensus_1098#0      AAAAAGGTCTCTGCAATCTTCCATTAATGTGGAAACACACAGACACACACCCGCTTGCAG 180
consensus_1098#1      AAAAAGGTCTCTGCAATCTTCCATTAATGTGGAAACACACAGACACACACACGCTTGCAG 132
                      ************************************************** *********

consensus_1098#0      GACAGGAAACGGAATTTCAGTTCCCAGGATTCAGTTCCCAGGAGTGTTTG----TAAACT 236
consensus_1098#1      GACAGGAAACGGAATTTGTGCAAGAAGGATTCAGTTCCCAGGAGTGTTTGGTTGTAAACT 192
                      *****************  *     *************************    ******

consensus_1098#0      GAATGATAATAAGGAAGCCAGAACACACAAAGAAATAAAGCGGAAATCATGGATAAAACA 296
consensus_1098#1      GAATGATAATAAGGAAGCCAGAAAACACAAAGAAATAAAGCGGAAATCATGGATAAAACA 252
                      *********************** ************************************

consensus_1098#0      AATACAAGTCGTGACAAGCCGTATCAAAGCTGCAGAGGCGTCGAGCATTGGGCAAA-TGC 355
consensus_1098#1      AATACAAGTCGTGACAAGCCGTAACAGAGCTGCAGAGGCGTCAAGCATTGGACAAAATGC 312
                      *********************** ** *************** ******** **** ***

consensus_1098#0      TCCATGGTAAAATTTGTTTTTTTTTT-GTTTATGATAGTTACACAACATCAGGCTTTTTT 414
consensus_1098#1      TCCACTGTAAATTTTTTTTTTTTTTTTGTTTATGATAGTTACACAACATCAGGCTTTTTT 372
                      ****  ***** *** ********** *********************************

consensus_1098#0      TAATTTACCTTTTTTCCCCCTATAGTACTTTCCATAGACACACTTACTTTCCATAGACAG 474
consensus_1098#1      TAATTTATCTTTTT-CCCCCTATAGTACTTTCCATAGACACACTTCCTTTCCATAGACAG 431
                      ******* ****** ****************************** **************

consensus_1098#0      TTCAGGTGTGTCCGTCTCTGTGTGTGTGTGTGTTTGTGTGTTTCCATAAGGCAAAGTGAA 534
consensus_1098#1      TTCAGGTGTGTCCGTCTCTGTGTGTGTG----TTTGTGTGTTTCCATAAGGCAAAGTGAA 487
                      ****************************    ****************************

consensus_1098#0      GTGGATGGAAGGGTTTAAATTATATACGTAAGGATGTGTTTGTGTGTGTCTGATAGTGTA 594
consensus_1098#1      GTGGATGGAAGGGTTTAAATTATATACGTAAGGATGTGTTTGTGTGTGTCAGATAGTGTA 547
                      ************************************************** *********

consensus_1098#0      AAGGAAG---------------------------------------------- 601
consensus_1098#1      AAGGAAGAAATGAGAAATTAAGGGGGGTGCGGGGAGTAAAAAAAACTAGCCGT 600
                      *******