cluster # 1136

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Anopheles gambiae
cluster # 1136 cluster # 1136 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1136#0 length = 435 sequences # 1

consensus_1136#1 length = 310 sequences # 1

consensusID : consensus_1136#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 435
fasta sequence

                              [TGCCATCATTCAATTCACGACTTTAATTTATTCAAGAAAATTCCTTTAACTCACGCTGCTCAACCGCTGCCCTCGCTGCCACATACCATCACTTTCACTTTATTGCTTGTTTTCATGCTGCTTCCTTTTTTTTGATTAATTTTGCTAACATATTTTCAAATTCCAATCCAACGCATTCGCTTCTACTACGCCTTCCCACGAAAACCCCTACGCTAAGCCACTAAACCAGACGTCACTCAACGTTACCACTCCTATCGAATAAAACGGTGAAGCAACGGGGCGGCGCTCGCACAAGCTTTCGTTACAAACTTTAACTATGAATCAAAATTAAAATAAAAAACACACACACATTACACGCAGTTGGGCAGAGTTTAAAGCACACAAACTAAACGATTGGAAGAAAAGAGGATCTGCTTTATTGTACAGTTTAAGAAA]

[+] EMBL BM651315             [TGCCATCATTCAATTCACGACTTTAATTTATTCAAGAAAATTCCTTTAACTCACGCTGCTCAACCGCTGCCCTCGCTGCCACATACCATCACTTTCACTTTATTGCTTGTTTTCATGCTGCTTCCTTTTTTTTGATTAATTTTGCTAACATATTTTCAAATTCCAATCCAACGCATTCGCTTCTACTACGCCTTCCCACGAAAACCCCTACGCTAAGCCACTAAACCAGACGTCACTCAACGTTACCACTCCTATCGAATAAAACGGTGAAGCAACGGGGCGGCGCTCGCACAAGCTTTCGTTACAAACTTTAACTATGAATCAAAATTAAAATAAAAAACACACACACATTACACGCAGTTGGGCAGAGTTTAAAGCACACAAACTAAACGATTGGAAGAAAAGAGGATCTGCTTTATTGTACAGTTTAAGAAA]




>consensus_1136#0
TGCCATCATTCAATTCACGACTTTAATTTATTCAAGAAAATTCCTTTAACTCACGCTGCT
CAACCGCTGCCCTCGCTGCCACATACCATCACTTTCACTTTATTGCTTGTTTTCATGCTG
CTTCCTTTTTTTTGATTAATTTTGCTAACATATTTTCAAATTCCAATCCAACGCATTCGC
TTCTACTACGCCTTCCCACGAAAACCCCTACGCTAAGCCACTAAACCAGACGTCACTCAA
CGTTACCACTCCTATCGAATAAAACGGTGAAGCAACGGGGCGGCGCTCGCACAAGCTTTC
GTTACAAACTTTAACTATGAATCAAAATTAAAATAAAAAACACACACACATTACACGCAG
TTGGGCAGAGTTTAAAGCACACAAACTAAACGATTGGAAGAAAAGAGGATCTGCTTTATT
GTACAGTTTAAGAAA

consensusID : consensus_1136#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 310
fasta sequence

                              [TTTTTTTTAATTATTCGCATGATATCAACCATTCTGCCATCATTCAATTCACGACTTTAATTTATTCAAGAAAATTCCTTTAACTCACGCTGCTCATCCGCTGCCCTCGCTGCCACATACCTTCACTCTTTCACTCTTTCACACTTTCACTCTATTGCTTGTTTTCATGCTGATTCCGTTTTTGATTGATTTTGCTAACATATTTTCAATTTCCAATCCAACGCATTCGCTTCTACTACGCCTTCCCACGAAAACCCCTACTACTCTAAGCCACTAAACCAGATGCCACTCAACGTTACCACTCCTATCG]

[+] EMBL AGA283631            [TTTTTTTTAATTATTCGCATGATATCAACCATTCTGCCATCATTCAATTCACGACTTTAATTTATTCAAGAAAATTCCTTTAACTCACGCTGCTCATCCGCTGCCCTCGCTGCCACATACCTTCACTCTTTCACTCTTTCACACTTTCACTCTATTGCTTGTTTTCATGCTGATTCCGTTTTTGATTGATTTTGCTAACATATTTTCAATTTCCAATCCAACGCATTCGCTTCTACTACGCCTTCCCACGAAAACCCCTACTACTCTAAGCCACTAAACCAGATGCCACTCAACGTTACCACTCCTATCG]




>consensus_1136#1
TTTTTTTTAATTATTCGCATGATATCAACCATTCTGCCATCATTCAATTCACGACTTTAA
TTTATTCAAGAAAATTCCTTTAACTCACGCTGCTCATCCGCTGCCCTCGCTGCCACATAC
CTTCACTCTTTCACTCTTTCACACTTTCACTCTATTGCTTGTTTTCATGCTGATTCCGTT
TTTGATTGATTTTGCTAACATATTTTCAATTTCCAATCCAACGCATTCGCTTCTACTACG
CCTTCCCACGAAAACCCCTACTACTCTAAGCCACTAAACCAGATGCCACTCAACGTTACC
ACTCCTATCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1136#0      ----------------------------------TGCCATCATTCAATTCACGACTTTAA 26
consensus_1136#1      TTTTTTTTAATTATTCGCATGATATCAACCATTCTGCCATCATTCAATTCACGACTTTAA 60
                                                        **************************

consensus_1136#0      TTTATTCAAGAAAATTCCTTTAACTCACGCTGCTCAACCGCTGCCCTCGCTGCCACATAC 86
consensus_1136#1      TTTATTCAAGAAAATTCCTTTAACTCACGCTGCTCATCCGCTGCCCTCGCTGCCACATAC 120
                      ************************************ ***********************

consensus_1136#0      CATCACT------------------TTCACTTTATTGCTTGTTTTCATGCTGCTTCCTTT 128
consensus_1136#1      CTTCACTCTTTCACTCTTTCACACTTTCACTCTATTGCTTGTTTTCATGCTGATTCCGTT 180
                      * *****                  ****** ******************** **** **

consensus_1136#0      TTTTTGATTAATTTTGCTAACATATTTTCAAATTCCAATCCAACGCATTCGCTTCTACTA 188
consensus_1136#1      TTT--GATTGATTTTGCTAACATATTTTCAATTTCCAATCCAACGCATTCGCTTCTACTA 238
                      ***  **** ********************* ****************************

consensus_1136#0      CGCCTTCCCACGAAAACCCCTACG---CTAAGCCACTAAACCAGACGTCACTCAACGTTA 245
consensus_1136#1      CGCCTTCCCACGAAAACCCCTACTACTCTAAGCCACTAAACCAGATGCCACTCAACGTTA 298
                      ***********************    ****************** * ************

consensus_1136#0      CCACTCCTATCGAATAAAACGGTGAAGCAACGGGGCGGCGCTCGCACAAGCTTTCGTTAC 305
consensus_1136#1      CCACTCCTATCG------------------------------------------------ 310
                      ************                                                

consensus_1136#0      AAACTTTAACTATGAATCAAAATTAAAATAAAAAACACACACACATTACACGCAGTTGGG 365
consensus_1136#1      ------------------------------------------------------------
                                                                                  

consensus_1136#0      CAGAGTTTAAAGCACACAAACTAAACGATTGGAAGAAAAGAGGATCTGCTTTATTGTACA 425
consensus_1136#1      ------------------------------------------------------------
                                                                                  

consensus_1136#0      GTTTAAGAAA 435
consensus_1136#1      ----------