cluster # 1138

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Anopheles gambiae
cluster # 1138 cluster # 1138 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1138#0 length = 628 sequences # 1

consensus_1138#1 length = 310 sequences # 1

consensusID : consensus_1138#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 628
fasta sequence

                              [CCGGGTTTCTAGTGTGGAGACGCATTGAACCAATTCGTCGGGATCCACGAAAATATAATCAAAAAAAAAAAAAAAAAAAAAGGAATAGCAAAAGCGAGCGAGCAGGCACACGGCAAAGGGTGGCATTTGACATTGGCAATGGGCAAACGACAGCGCAGCGACTACCGTGTGGACGGTGGTGCCTCCTCGACCGAATCGAACGACGAAACGCTACTCGCCACCAAAATGAACGGCGGCGAGATGTGCACGCACATACAGAAGTCCATCGACCTGAACACGATACGCAAACAGATCAAAAGCAACGAGGAGTGGTGCAGAAGGACGTGCAGCAAGTGTGCGGACGAGCAGCAGGCGGCCCGCGGCGGCAGTTATGTCAACGAGCCGCTGAAAACGCCGAACGATGTCAACGGTGATACCTCGCTGTGGTTCTGCCTCAAATGTGGCACACAGCTCTGTGGCCGGAACAAAAACCAGCACGCTTTGCAGCATTATGCAACGCCTCGCTCCGATATGCACGCCCTTGCAATCAACACCACCACGCTGGATGTGTGGTGCTACACCTGCAGCGTGCCGGTCGATCCGTACGCCAAGCCGAAGCTGCTCGATATAGTCGAGTTTGTCAAGCGCG]

[+] EMBL BM613396             [CCGGGTTTCTAGTGTGGAGACGCATTGAACCAATTCGTCGGGATCCACGAAAATATAATCAAAAAAAAAAAAAAAAAAAAAGGAATAGCAAAAGCGAGCGAGCAGGCACACGGCAAAGGGTGGCATTTGACATTGGCAATGGGCAAACGACAGCGCAGCGACTACCGTGTGGACGGTGGTGCCTCCTCGACCGAATCGAACGACGAAACGCTACTCGCCACCAAAATGAACGGCGGCGAGATGTGCACGCACATACAGAAGTCCATCGACCTGAACACGATACGCAAACAGATCAAAAGCAACGAGGAGTGGTGCAGAAGGACGTGCAGCAAGTGTGCGGACGAGCAGCAGGCGGCCCGCGGCGGCAGTTATGTCAACGAGCCGCTGAAAACGCCGAACGATGTCAACGGTGATACCTCGCTGTGGTTCTGCCTCAAATGTGGCACACAGCTCTGTGGCCGGAACAAAAACCAGCACGCTTTGCAGCATTATGCAACGCCTCGCTCCGATATGCACGCCCTTGCAATCAACACCACCACGCTGGATGTGTGGTGCTACACCTGCAGCGTGCCGGTCGATCCGTACGCCAAGCCGAAGCTGCTCGATATAGTCGAGTTTGTCAAGCGCG]




>consensus_1138#0
CCGGGTTTCTAGTGTGGAGACGCATTGAACCAATTCGTCGGGATCCACGAAAATATAATC
AAAAAAAAAAAAAAAAAAAAAGGAATAGCAAAAGCGAGCGAGCAGGCACACGGCAAAGGG
TGGCATTTGACATTGGCAATGGGCAAACGACAGCGCAGCGACTACCGTGTGGACGGTGGT
GCCTCCTCGACCGAATCGAACGACGAAACGCTACTCGCCACCAAAATGAACGGCGGCGAG
ATGTGCACGCACATACAGAAGTCCATCGACCTGAACACGATACGCAAACAGATCAAAAGC
AACGAGGAGTGGTGCAGAAGGACGTGCAGCAAGTGTGCGGACGAGCAGCAGGCGGCCCGC
GGCGGCAGTTATGTCAACGAGCCGCTGAAAACGCCGAACGATGTCAACGGTGATACCTCG
CTGTGGTTCTGCCTCAAATGTGGCACACAGCTCTGTGGCCGGAACAAAAACCAGCACGCT
TTGCAGCATTATGCAACGCCTCGCTCCGATATGCACGCCCTTGCAATCAACACCACCACG
CTGGATGTGTGGTGCTACACCTGCAGCGTGCCGGTCGATCCGTACGCCAAGCCGAAGCTG
CTCGATATAGTCGAGTTTGTCAAGCGCG

consensusID : consensus_1138#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 310
fasta sequence

                              [CCGGGTTTCTAGTGTGGAGACGCATTGAACCAATTCGTCGGGATCCACGAAAATATAATCAAAAAAAAAAAAAAAAAAGGAATAGCAAAAGCGGTAAGCGACCCCTTTTACATTTCGTTCCTCTTCGCTTGCCGAAACTTTAACACGGGGTTTGGCTATCTTTTTTTTGTGGGGTAGCTGTTTTTTTTATGCCACTGCATTTTGACTTGTACAGCGAGTTGGAATTTTTATTATTACACAAAGCATGAATCGTTCGATAATGCAAGAATGCTCGTGTGGATACCCAATAAATTGGATGCAGCACTCGGTG]

[+] EMBL BM657460             [CCGGGTTTCTAGTGTGGAGACGCATTGAACCAATTCGTCGGGATCCACGAAAATATAATCAAAAAAAAAAAAAAAAAAGGAATAGCAAAAGCGGTAAGCGACCCCTTTTACATTTCGTTCCTCTTCGCTTGCCGAAACTTTAACACGGGGTTTGGCTATCTTTTTTTTGTGGGGTAGCTGTTTTTTTTATGCCACTGCATTTTGACTTGTACAGCGAGTTGGAATTTTTATTATTACACAAAGCATGAATCGTTCGATAATGCAAGAATGCTCGTGTGGATACCCAATAAATTGGATGCAGCACTCGGTG]




>consensus_1138#1
CCGGGTTTCTAGTGTGGAGACGCATTGAACCAATTCGTCGGGATCCACGAAAATATAATC
AAAAAAAAAAAAAAAAAAGGAATAGCAAAAGCGGTAAGCGACCCCTTTTACATTTCGTTC
CTCTTCGCTTGCCGAAACTTTAACACGGGGTTTGGCTATCTTTTTTTTGTGGGGTAGCTG
TTTTTTTTATGCCACTGCATTTTGACTTGTACAGCGAGTTGGAATTTTTATTATTACACA
AAGCATGAATCGTTCGATAATGCAAGAATGCTCGTGTGGATACCCAATAAATTGGATGCA
GCACTCGGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1138#0      CCGGGTTTCTAGTGTGGAGACGCATTGAACCAATTCGTCGGGATCCACGAAAATATAATC 60
consensus_1138#1      CCGGGTTTCTAGTGTGGAGACGCATTGAACCAATTCGTCGGGATCCACGAAAATATAATC 60
                      ************************************************************

consensus_1138#0      AAAAAAAAAAAAAAAAAAAAAGGAATAGCAAAAGCGAGCGAGCAGGCACACG-GCAAAGG 119
consensus_1138#1      AAAAAAAAAAAAAAAAAA---GGAATAGCAAAAGCG-GTAAGCGACCCCTTTTACATTTC 116
                      ******************   *************** *  ***   * *     **    

consensus_1138#0      GTGGCATTTGACATTGGCAATGGGCAAACG-ACAGCGCAGCGA-CTACCGTGTGGACGGT 177
consensus_1138#1      GTTCCTCTTCGC-TTGCCGAAACTTTAACACGGGGTTTGGCTATCTTTTTTTTGTGGGGT 175
                      **  *  **  * *** * *      ***     *    ** * **    * **   ***

consensus_1138#0      GG-TGCCTCCTCGACCGAATCGAACGACGAAACGCTACTCGCCACCAAAATGAACGGCGG 236
consensus_1138#1      AGCTGTTTTTTTTATGCCACTGCATTTTGACTTG-TACAGCGAGTTGGAATTTTTATTAT 234
                       * **  *  *  *    *  * *    **   * ***          ***         

consensus_1138#0      CGAGATGTGCACGCA-CATACAGAAGTCCATCGACCTGAACACGATACGCAAACAGATCA 295
consensus_1138#1      TACACAAAGCATGAATCGTTCGATAATGCAAGAATGCTCGTGTGGATACCCAATAAATTG 294
                              *** * * * * *   * * **   *         *     * ** * **  

consensus_1138#0      AAAGCAACGAGGAGTGGTGCAGAAGGACGTGCAGCAAGTGTGCGGACGAGCAGCAGGCGG 355
consensus_1138#1      GATGCAGCACTCGGTG-------------------------------------------- 310
                       * *** *     ***                                            

consensus_1138#0      CCCGCGGCGGCAGTTATGTCAACGAGCCGCTGAAAACGCCGAACGATGTCAACGGTGATA 415
consensus_1138#1      ------------------------------------------------------------
                                                                                  

consensus_1138#0      CCTCGCTGTGGTTCTGCCTCAAATGTGGCACACAGCTCTGTGGCCGGAACAAAAACCAGC 475
consensus_1138#1      ------------------------------------------------------------
                                                                                  

consensus_1138#0      ACGCTTTGCAGCATTATGCAACGCCTCGCTCCGATATGCACGCCCTTGCAATCAACACCA 535
consensus_1138#1      ------------------------------------------------------------
                                                                                  

consensus_1138#0      CCACGCTGGATGTGTGGTGCTACACCTGCAGCGTGCCGGTCGATCCGTACGCCAAGCCGA 595
consensus_1138#1      ------------------------------------------------------------
                                                                                  

consensus_1138#0      AGCTGCTCGATATAGTCGAGTTTGTCAAGCGCG 628
consensus_1138#1      ---------------------------------