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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_117#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence
[CACATGCTGCCTTTGTGAATTTTTTNAAATGGTTCAGAAAACATGATTATTTTTGTTTGGTTTAACATTTTCAACACTGTTAGCTACCGACTATTTGCTAGACGCTAAAATACAGAAAGTAACAAAGTCTTTTCGTGGCCGTCCGACCGGGCAAACTATTTTGCCTCGTAGTATTTCCTGCGCATCGTTTTCAGTTCATCGAAGAATAGCAACACCAGCGTTGCGTGCGGCCCAATTCGCATGTAGTGTGGCCAAAAGCCTTTGTACAGCCCGGCCACACCCTCCGCCTTGAGTATTTTTACGAAACAATCCACCACCCCGTTGTAGTAAATCCCCCTACCCTTGGCATCCACTCCTTGGTTGTACAGGCGTGTCGCTATANACGTCCGGCGGTGTAACTCGTGATGGCCATTACCGTGCCTCCGACCGGGCCGGCACAGGTCGACTTCTTGNCGTATCGCTTATGCTGTGCACTAACCGGATGTCGAACGAGGAAATCTTTCGTGTAACCGAAGTGCGGCCAGCTGGCCACGAGTG]
[+] EMBL BX466833 [CACATGCTGCCTTTGTGAATTTTTTNAAATGGTTCAGAAAACATGATTATTTTTGTTTGGTTTAACATTTTCAACACTGTTAGCTACCGACTATTTGCTAGACGCTAAAATACAGAAAGTAACAAAGTCTTTTCGTGGCCGTCCGACCGGGCAAACTATTTTGCCTCGTAGTATTTCCTGCGCATCGTTTTCAGTTCATCGAAGAATAGCAACACCAGCGTTGCGTGCGGCCCAATTCGCATGTAGTGTGGCCAAAAGCCTTTGTACAGCCCGGCCACACCCTCCGCCTTGAGTATTTTTACGAAACAATCCACCACCCCGTTGTAGTAAATCCCCCTACCCTTGGCATCCACTCCTTGGTTGTACAGGCGTGTCGCTATANACGTCCGGCGGTGTAACTCGTGATGGCCATTACCGTGCCTCCGACCGGGCCGGCACAGGTCGACTTCTTGNCGTATCGCTTATGCTGTGCACTAACCGGATGTCGAACGAGGAAATCTTTCGTGTAACCGAAGTGCGGCCAGCTGGCCACGAGTG]
consensusID : consensus_117#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence
[TGCCCAAAGCCTTTGTACAGCCCGGCCACACCNNCCGCTTTGAGTATTTTTACGAAACAATCCACCACCCCGTTGTAGTAAATCCCCCTACCCCTGGCATCCACNNCTTGGTTGTACAGGCGTGTCGCTATAACGTCCGGCGGTGTCATCGTGATGGCCATTACCGTGCCTCCGACCGCGCCGGCGACAGTCGACACAAACGTATCGCTTTGCTGTGCACTAACCGGATGTCGAACGAGGAAATCTTTCGTGTAACCGAATGCGGCCAGCTGACCACCGCTGCCGAGCAAGGCGCGTGGCATCGTCACTGCTACGCCACGGTACAGGCCCTGCACGCCGTGCTTCCTGAAAATGTCTTTCATAGCGCTGATCATACCGCTGTGCTGGTGCTGGTAACCGACCGCTATTTCTGCCTTGGCCTGTGATTGGAGATGTGTGCGTAGCATAAAGAAGGGACTTGCCAAAGCCGACCCGACGAATCCTTCCTGGTCAGTNGCCCCAGAANG]
[-] EMBL BX624341 [TGCCCAAAGCCTTTGTACAGCCCGGCCACACCNNCCGCTTTGAGTATTTTTACGAAACAATCCACCACCCCGTTGTAGTAAATCCCCCTACCCCTGGCATCCACNNCTTGGTTGTACAGGCGTGTCGCTATAACGTCCGGCGGTGTCATCGTGATGGCCATTACCGTGCCTCCGACCGCGCCGGCGACAGTCGACACAAACGTATCGCTTTGCTGTGCACTAACCGGATGTCGAACGAGGAAATCTTTCGTGTAACCGAATGCGGCCAGCTGACCACCGCTGCCGAGCAAGGCGCGTGGCATCGTCACTGCTACGCCACGGTACAGGCCCTGCACGCCGTGCTTCCTGAAAATGTCTTTCATAGCGCTGATCATACCGCTGTGCTGGTGCTGGTAACCGACCGCTATTTCTGCCTTGGCCTGTGATTGGAGATGTGTGCGTAGCATAAAGAAGGGACTTGCCAAAGCCGACCCGACGAATCCTTCCTGGTCAGTNGCCCCAGAANG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_117#0 CACATGCTGCCTTTGTGAATTTTTTNAAATGGTTCAGAAAACATGATTATTTTTGTTTGG 60
consensus_117#1 ------------------------------------------------------------
consensus_117#0 TTTAACATTTTCAACACTGTTAGCTACCGACTATTTGCTAGACGCTAAAATACAGAAAGT 120
consensus_117#1 ------------------------------------------------------------
consensus_117#0 AACAAAGTCTTTTCGTGGCCGTCCGACCGGGCAAACTATTTTGCCTCGTAGTATTTCCTG 180
consensus_117#1 ------------------------------------------------------------
consensus_117#0 CGCATCGTTTTCAGTTCATCGAAGAATAGCAACACCAGCGTTGCGTGCGGCCCAATTCGC 240
consensus_117#1 ------------------------------------------------------------
consensus_117#0 ATGTAGTGTGGCCAAAAGCCTTTGTACAGCCCGGCCACACCCTCCGCCTTGAGTATTTTT 300
consensus_117#1 ---------TGCCCAAAGCCTTTGTACAGCCCGGCCACACCNNCCGCTTTGAGTATTTTT 51
*** *************************** **** ************
consensus_117#0 ACGAAACAATCCACCACCCCGTTGTAGTAAATCCCCCTACCCTTGGCATCCACTCCTTGG 360
consensus_117#1 ACGAAACAATCCACCACCCCGTTGTAGTAAATCCCCCTACCCCTGGCATCCACNNCTTGG 111
****************************************** ********** *****
consensus_117#0 TTGTACAGGCGTGTCGCTATANACGTCCGGCGGTGTAACTCGTGATGGCCATTACCGTGC 420
consensus_117#1 TTGTACAGGCGTGTCGCTATAA-CGTCCGGCGGTGTCA-TCGTGATGGCCATTACCGTGC 169
********************* ************* * *********************
consensus_117#0 CTCCGACCGGGCCGGCACAGGTCGACTTCTTGNCGTATCGCTTATGCTGTGCACTAACCG 480
consensus_117#1 CTCCGACCGCGCCGGCGACAGTCGACACA--AACGTATCGCTT-TGCTGTGCACTAACCG 226
********* ****** ****** ********** ****************
consensus_117#0 GATGTCGAACGAGGAAATCTTTCGTGTAACCGAAGTGCGGCCAGCTGGCCACGAGTG--- 537
consensus_117#1 GATGTCGAACGAGGAAATCTTTCGTGTAACCGAA-TGCGGCCAGCTGACCACCGCTGCCG 285
********************************** ************ **** **
consensus_117#0 ------------------------------------------------------------
consensus_117#1 AGCAAGGCGCGTGGCATCGTCACTGCTACGCCACGGTACAGGCCCTGCACGCCGTGCTTC 345
consensus_117#0 ------------------------------------------------------------
consensus_117#1 CTGAAAATGTCTTTCATAGCGCTGATCATACCGCTGTGCTGGTGCTGGTAACCGACCGCT 405
consensus_117#0 ------------------------------------------------------------
consensus_117#1 ATTTCTGCCTTGGCCTGTGATTGGAGATGTGTGCGTAGCATAAAGAAGGGACTTGCCAAA 465
consensus_117#0 -----------------------------------------
consensus_117#1 GCCGACCCGACGAATCCTTCCTGGTCAGTNGCCCCAGAANG 506
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||