cluster # 1174

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1174 cluster # 1174 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1174#0 length = 461 sequences # 1

consensus_1174#1 length = 204 sequences # 1

consensusID : consensus_1174#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence

                              [AGGCAGACTCGGCACGTNNGGAGCACACAAAAGCGCCTGGCCATTTATGGAACCCGGTCGATCCGAACGAGGCACCGGATTACTATCGTGTGATAAAGGAACCTATGGACCTGCAAAAGATTGAAGGTAAAATCGACAACAAAGTGTATCAAACGCTGTCCGAGTTTATCGGCGACATGACGAAGATATTCGACAACTGCCGGTACTACAACCCGAAGGAGTCGCCGTTCTTCCGGTGCGCGGAAAGTCTGGAATCGTTCTTCGTGCAGAAGATCAAAGCACTTCCGCGAGCATCTCATCGATCGAAACGATGATGCGGCGGACGTAGTGGCGGCGGCGGTGGCCGGCGGTAGTTCACTTTCACCCGTTGCCAGNCCACCGGAGGCATCTGCCGTGACCGCGATTGCGTAGTCTAGCAGCAACTCCATTCTGTACAACTATCTGCAGAATGGTTAGCTTAT]

[+] EMBL BX468546             [AGGCAGACTCGGCACGTNNGGAGCACACAAAAGCGCCTGGCCATTTATGGAACCCGGTCGATCCGAACGAGGCACCGGATTACTATCGTGTGATAAAGGAACCTATGGACCTGCAAAAGATTGAAGGTAAAATCGACAACAAAGTGTATCAAACGCTGTCCGAGTTTATCGGCGACATGACGAAGATATTCGACAACTGCCGGTACTACAACCCGAAGGAGTCGCCGTTCTTCCGGTGCGCGGAAAGTCTGGAATCGTTCTTCGTGCAGAAGATCAAAGCACTTCCGCGAGCATCTCATCGATCGAAACGATGATGCGGCGGACGTAGTGGCGGCGGCGGTGGCCGGCGGTAGTTCACTTTCACCCGTTGCCAGNCCACCGGAGGCATCTGCCGTGACCGCGATTGCGTAGTCTAGCAGCAACTCCATTCTGTACAACTATCTGCAGAATGGTTAGCTTAT]




>consensus_1174#0
AGGCAGACTCGGCACGTNNGGAGCACACAAAAGCGCCTGGCCATTTATGGAACCCGGTCG
ATCCGAACGAGGCACCGGATTACTATCGTGTGATAAAGGAACCTATGGACCTGCAAAAGA
TTGAAGGTAAAATCGACAACAAAGTGTATCAAACGCTGTCCGAGTTTATCGGCGACATGA
CGAAGATATTCGACAACTGCCGGTACTACAACCCGAAGGAGTCGCCGTTCTTCCGGTGCG
CGGAAAGTCTGGAATCGTTCTTCGTGCAGAAGATCAAAGCACTTCCGCGAGCATCTCATC
GATCGAAACGATGATGCGGCGGACGTAGTGGCGGCGGCGGTGGCCGGCGGTAGTTCACTT
TCACCCGTTGCCAGNCCACCGGAGGCATCTGCCGTGACCGCGATTGCGTAGTCTAGCAGC
AACTCCATTCTGTACAACTATCTGCAGAATGGTTAGCTTAT

consensusID : consensus_1174#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 204
fasta sequence

                              [CAGATCGCACGAGGTGTACTGCAAAAGATTGAAGGTAAACATCGACAACAAAGTGTATCAACGCTGTCCGAGTTTATCGGCGACATGACGAAGATATTCGACAACTGCCGGTACGACAACCCGAAGGAGTCGCCGTTCTTCCGGTGCGCGGAAAGTCTGGAATCGTTCTTCGTGCAGAAGATCAAACACTTCCGCGAGCATCTC]

[+] EMBL BX469331             [CAGATCGCACGAGGTGTACTGCAAAAGATTGAAGGTAAACATCGACAACAAAGTGTATCAACGCTGTCCGAGTTTATCGGCGACATGACGAAGATATTCGACAACTGCCGGTACGACAACCCGAAGGAGTCGCCGTTCTTCCGGTGCGCGGAAAGTCTGGAATCGTTCTTCGTGCAGAAGATCAAACACTTCCGCGAGCATCTC]




>consensus_1174#1
CAGATCGCACGAGGTGTACTGCAAAAGATTGAAGGTAAACATCGACAACAAAGTGTATCA
ACGCTGTCCGAGTTTATCGGCGACATGACGAAGATATTCGACAACTGCCGGTACGACAAC
CCGAAGGAGTCGCCGTTCTTCCGGTGCGCGGAAAGTCTGGAATCGTTCTTCGTGCAGAAG
ATCAAACACTTCCGCGAGCATCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1174#0      AGGCAGACTCGGCACGTNNGGAGCACACAAAAGCGCCTGGCCATTTATGGAACCCGGTCG 60
consensus_1174#1      ------------------------------------------------------------
                                                                                  

consensus_1174#0      ATCCGAACGAGGCACCGGATTACTATCGTGTGATAAAGGAACCTATGGACCTGCAAAAGA 120
consensus_1174#1      --------------------------------CAGATCGCACGAGGTGTACTGCAAAAGA 28
                                                         *  * **     *  **********

consensus_1174#0      TTGAAGGTAAA-ATCGACAACAAAGTGTATCAAACGCTGTCCGAGTTTATCGGCGACATG 179
consensus_1174#1      TTGAAGGTAAACATCGACAACAAAGTGTATCAA-CGCTGTCCGAGTTTATCGGCGACATG 87
                      *********** ********************* **************************

consensus_1174#0      ACGAAGATATTCGACAACTGCCGGTACTACAACCCGAAGGAGTCGCCGTTCTTCCGGTGC 239
consensus_1174#1      ACGAAGATATTCGACAACTGCCGGTACGACAACCCGAAGGAGTCGCCGTTCTTCCGGTGC 147
                      *************************** ********************************

consensus_1174#0      GCGGAAAGTCTGGAATCGTTCTTCGTGCAGAAGATCAAAGCACTTCCGCGAGCATCTCAT 299
consensus_1174#1      GCGGAAAGTCTGGAATCGTTCTTCGTGCAGAAGATCAAA-CACTTCCGCGAGCATCTC-- 204
                      *************************************** ******************  

consensus_1174#0      CGATCGAAACGATGATGCGGCGGACGTAGTGGCGGCGGCGGTGGCCGGCGGTAGTTCACT 359
consensus_1174#1      ------------------------------------------------------------
                                                                                  

consensus_1174#0      TTCACCCGTTGCCAGNCCACCGGAGGCATCTGCCGTGACCGCGATTGCGTAGTCTAGCAG 419
consensus_1174#1      ------------------------------------------------------------
                                                                                  

consensus_1174#0      CAACTCCATTCTGTACAACTATCTGCAGAATGGTTAGCTTAT 461
consensus_1174#1      ------------------------------------------