cluster # 1175

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Anopheles gambiae
cluster # 1175 cluster # 1175 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1175#0 length = 661 sequences # 1

consensus_1175#1 length = 262 sequences # 1

consensusID : consensus_1175#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 661
fasta sequence

                              [GAATCCCCCGAGGTNCACAGAAAAGTGGTCCCTTTGCAAAAGCGTTCTTCAGCTGGAAAATCATGGCAAACGAGGCCGAAGACCACCTAATTGCCATAAGATTGCAACAGCAGTTTGACAAAGAATCAATCGACATAAGTTCTGGCGAGGATGATGATTTAAAAGTCGATTCTATTGAACGGGATCGTCTGCTGGCGGTGCAACTTCAAGCGCAGTACCAAGCCGAATCGGTTGATTTGCTTTCCGATAGCGATGATGATGTTATATTACAAGCCACAGCTGCATCCGCAGATACACCAAAACAAAAGCCAAAACAATCATCCACCGTGCAAAGCGGAATCAACTATGTCCACACTGTTCAGGAGCCACAACTTTTTAAGGCAAAGACCTCGGATCTGAACAGCTACGAATATTTCATAGACGAACTGCAGATTTACGTGGACATGGAGAACAACTTTGAATGGAAATTCATCGATATGCTGCTGCCCGACATTCGAGCGATATTTAACAAATTCGATGCACTGTTTCTTTCAGTCTCCGATTACAGAAGAAAAAAATTGACATTATGTGGTCCGACGCAATGGGTAACTCACTCACGAACAGGAATTTCAATGATGATCAAGGCAGATATTTAATCGCACTGAACGGACCACTGCTTACA]

[+] EMBL AL933098             [GAATCCCCCGAGGTNCACAGAAAAGTGGTCCCTTTGCAAAAGCGTTCTTCAGCTGGAAAATCATGGCAAACGAGGCCGAAGACCACCTAATTGCCATAAGATTGCAACAGCAGTTTGACAAAGAATCAATCGACATAAGTTCTGGCGAGGATGATGATTTAAAAGTCGATTCTATTGAACGGGATCGTCTGCTGGCGGTGCAACTTCAAGCGCAGTACCAAGCCGAATCGGTTGATTTGCTTTCCGATAGCGATGATGATGTTATATTACAAGCCACAGCTGCATCCGCAGATACACCAAAACAAAAGCCAAAACAATCATCCACCGTGCAAAGCGGAATCAACTATGTCCACACTGTTCAGGAGCCACAACTTTTTAAGGCAAAGACCTCGGATCTGAACAGCTACGAATATTTCATAGACGAACTGCAGATTTACGTGGACATGGAGAACAACTTTGAATGGAAATTCATCGATATGCTGCTGCCCGACATTCGAGCGATATTTAACAAATTCGATGCACTGTTTCTTTCAGTCTCCGATTACAGAAGAAAAAAATTGACATTATGTGGTCCGACGCAATGGGTAACTCACTCACGAACAGGAATTTCAATGATGATCAAGGCAGATATTTAATCGCACTGAACGGACCACTGCTTACA]




>consensus_1175#0
GAATCCCCCGAGGTNCACAGAAAAGTGGTCCCTTTGCAAAAGCGTTCTTCAGCTGGAAAA
TCATGGCAAACGAGGCCGAAGACCACCTAATTGCCATAAGATTGCAACAGCAGTTTGACA
AAGAATCAATCGACATAAGTTCTGGCGAGGATGATGATTTAAAAGTCGATTCTATTGAAC
GGGATCGTCTGCTGGCGGTGCAACTTCAAGCGCAGTACCAAGCCGAATCGGTTGATTTGC
TTTCCGATAGCGATGATGATGTTATATTACAAGCCACAGCTGCATCCGCAGATACACCAA
AACAAAAGCCAAAACAATCATCCACCGTGCAAAGCGGAATCAACTATGTCCACACTGTTC
AGGAGCCACAACTTTTTAAGGCAAAGACCTCGGATCTGAACAGCTACGAATATTTCATAG
ACGAACTGCAGATTTACGTGGACATGGAGAACAACTTTGAATGGAAATTCATCGATATGC
TGCTGCCCGACATTCGAGCGATATTTAACAAATTCGATGCACTGTTTCTTTCAGTCTCCG
ATTACAGAAGAAAAAAATTGACATTATGTGGTCCGACGCAATGGGTAACTCACTCACGAA
CAGGAATTTCAATGATGATCAAGGCAGATATTTAATCGCACTGAACGGACCACTGCTTAC
A

consensusID : consensus_1175#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 262
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGTTCGAGCGATATTTAACAAATTCGATGCACTGTTCTTTCAGTCTCGATTACAGAAGAAAAAAATTGACATTATGTGGTCCGACGCAATGGGTAACTCACTCACGAACAGGAATTTCAATGATGATCAAGGCAGATATTTAATCGCACTGAACGGACCACTGCTCACATTACGGCCCCGTATCGAAATCATCAGTATAATTCTGCATGAAATGATACACGCCCTGCTTAAAATAGA]

[+] EMBL BM580002             [CCGCGGACGCGTGGGCGGACGCGTGGGTTCGAGCGATATTTAACAAATTCGATGCACTGTTCTTTCAGTCTCGATTACAGAAGAAAAAAATTGACATTATGTGGTCCGACGCAATGGGTAACTCACTCACGAACAGGAATTTCAATGATGATCAAGGCAGATATTTAATCGCACTGAACGGACCACTGCTCACATTACGGCCCCGTATCGAAATCATCAGTATAATTCTGCATGAAATGATACACGCCCTGCTTAAAATAGA]




>consensus_1175#1
CCGCGGACGCGTGGGCGGACGCGTGGGTTCGAGCGATATTTAACAAATTCGATGCACTGT
TCTTTCAGTCTCGATTACAGAAGAAAAAAATTGACATTATGTGGTCCGACGCAATGGGTA
ACTCACTCACGAACAGGAATTTCAATGATGATCAAGGCAGATATTTAATCGCACTGAACG
GACCACTGCTCACATTACGGCCCCGTATCGAAATCATCAGTATAATTCTGCATGAAATGA
TACACGCCCTGCTTAAAATAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1175#0      GAATCCCCCGAGGTNCACAGAAAAGTGGTCCCTTTGCAAAAGCGTTCTTCAGCTGGAAAA 60
consensus_1175#1      ------------------------------------------------------------
                                                                                  

consensus_1175#0      TCATGGCAAACGAGGCCGAAGACCACCTAATTGCCATAAGATTGCAACAGCAGTTTGACA 120
consensus_1175#1      ------------------------------------------------------------
                                                                                  

consensus_1175#0      AAGAATCAATCGACATAAGTTCTGGCGAGGATGATGATTTAAAAGTCGATTCTATTGAAC 180
consensus_1175#1      ------------------------------------------------------------
                                                                                  

consensus_1175#0      GGGATCGTCTGCTGGCGGTGCAACTTCAAGCGCAGTACCAAGCCGAATCGGTTGATTTGC 240
consensus_1175#1      ------------------------------------------------------------
                                                                                  

consensus_1175#0      TTTCCGATAGCGATGATGATGTTATATTACAAGCCACAGCTGCATCCGCAGATACACCAA 300
consensus_1175#1      ------------------------------------------------------------
                                                                                  

consensus_1175#0      AACAAAAGCCAAAACAATCATCCACCGTGCAAAGCGGAATCAACTATGTCCACACTGTTC 360
consensus_1175#1      ------------------------------------------------------------
                                                                                  

consensus_1175#0      AGGAGCCACAACTTTTTAAGGCAAAGACCTCGGATCTGAACAGCTACGAATATTTCATAG 420
consensus_1175#1      ------------------------------------------------------------
                                                                                  

consensus_1175#0      ACGAACTGCAGATTTACGTGGACATGGAGAACAACTTTGAATGGAAATTCATCGATATGC 480
consensus_1175#1      ----------------------------------------CCGCGGACGCGTGG----GC 16
                                                                *   *  * * *    **

consensus_1175#0      TGCTGCCCGACATTCGAGCGATATTTAACAAATTCGATGCACTGTTTCTTTCAGTCTCCG 540
consensus_1175#1      GGACGCGTGG-GTTCGAGCGATATTTAACAAATTCGATGCACTGTT-CTTTCAGTCTC-G 73
                       *  **  *   ********************************** *********** *

consensus_1175#0      ATTACAGAAGAAAAAAATTGACATTATGTGGTCCGACGCAATGGGTAACTCACTCACGAA 600
consensus_1175#1      ATTACAGAAGAAAAAAATTGACATTATGTGGTCCGACGCAATGGGTAACTCACTCACGAA 133
                      ************************************************************

consensus_1175#0      CAGGAATTTCAATGATGATCAAGGCAGATATTTAATCGCACTGAACGGACCACTGCTTAC 660
consensus_1175#1      CAGGAATTTCAATGATGATCAAGGCAGATATTTAATCGCACTGAACGGACCACTGCTCAC 193
                      ********************************************************* **

consensus_1175#0      A----------------------------------------------------------- 661
consensus_1175#1      ATTACGGCCCCGTATCGAAATCATCAGTATAATTCTGCATGAAATGATACACGCCCTGCT 253
                      *                                                           

consensus_1175#0      ---------
consensus_1175#1      TAAAATAGA 262