cluster # 1200

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1200 cluster # 1200 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1200#0 length = 676 sequences # 1

consensus_1200#1 length = 407 sequences # 1

consensusID : consensus_1200#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 676
fasta sequence

                              [GCGCACAACAATCGCTTCGACGAGACGGTGCAGGTGCTGAACGCCTCCATCCCAGACACCGTGCGCCAGCAGATGCTGGAGAAGGAGGAGCTGCTGAAGAAGCGGGCCGAACACGAGAAGCAAAAGCTGCTCGATCTGTTCAGCTCACCCACCTTCGCCACCCCGTCCCCGACCGGGTCGAGTCTGTCCGGCGAGGAGGCGATCAATTTCCACCTAATCAAGGCGGAAGAGTGTCGCAATCTGGCCCAGCATCATCTCGACCTGAAGAACGAATGCCACGCAAAGGCCCGGCAGGCGATTCAGCGCAATGTGCCGGGTTTGGCCGACTATTACTCGCAGATTGCGCGCCTGCACCGGACCAAGATCGACATGTACAACAGCCGGGCGTCCAACTGCATCATGGAGGTGCACAAGCTGAAGCTGAACAATGACGATGTGCTCGATCTGCACTATCTGCACTCGCAGGAGGCGCTGCGCTGCTTGGAGCTGTTCCTTGCCGAGCATGCCTCGAATCTGCTCAACTCGCAGCAACGCTTCAAGACGCTGTACATCATCACGGGGCGCGGATTGCATTCCGCCGATGGCAAACCAATCATCAAGCAGCGTGTTAAAGCCATGCTGAGAGTTAAGAACATAAGATACACCGAACTGAACCCGGGTTTCCTCAAGATTAAGC]

[+] EMBL BX612712             [GCGCACAACAATCGCTTCGACGAGACGGTGCAGGTGCTGAACGCCTCCATCCCAGACACCGTGCGCCAGCAGATGCTGGAGAAGGAGGAGCTGCTGAAGAAGCGGGCCGAACACGAGAAGCAAAAGCTGCTCGATCTGTTCAGCTCACCCACCTTCGCCACCCCGTCCCCGACCGGGTCGAGTCTGTCCGGCGAGGAGGCGATCAATTTCCACCTAATCAAGGCGGAAGAGTGTCGCAATCTGGCCCAGCATCATCTCGACCTGAAGAACGAATGCCACGCAAAGGCCCGGCAGGCGATTCAGCGCAATGTGCCGGGTTTGGCCGACTATTACTCGCAGATTGCGCGCCTGCACCGGACCAAGATCGACATGTACAACAGCCGGGCGTCCAACTGCATCATGGAGGTGCACAAGCTGAAGCTGAACAATGACGATGTGCTCGATCTGCACTATCTGCACTCGCAGGAGGCGCTGCGCTGCTTGGAGCTGTTCCTTGCCGAGCATGCCTCGAATCTGCTCAACTCGCAGCAACGCTTCAAGACGCTGTACATCATCACGGGGCGCGGATTGCATTCCGCCGATGGCAAACCAATCATCAAGCAGCGTGTTAAAGCCATGCTGAGAGTTAAGAACATAAGATACACCGAACTGAACCCGGGTTTCCTCAAGATTAAGC]




>consensus_1200#0
GCGCACAACAATCGCTTCGACGAGACGGTGCAGGTGCTGAACGCCTCCATCCCAGACACC
GTGCGCCAGCAGATGCTGGAGAAGGAGGAGCTGCTGAAGAAGCGGGCCGAACACGAGAAG
CAAAAGCTGCTCGATCTGTTCAGCTCACCCACCTTCGCCACCCCGTCCCCGACCGGGTCG
AGTCTGTCCGGCGAGGAGGCGATCAATTTCCACCTAATCAAGGCGGAAGAGTGTCGCAAT
CTGGCCCAGCATCATCTCGACCTGAAGAACGAATGCCACGCAAAGGCCCGGCAGGCGATT
CAGCGCAATGTGCCGGGTTTGGCCGACTATTACTCGCAGATTGCGCGCCTGCACCGGACC
AAGATCGACATGTACAACAGCCGGGCGTCCAACTGCATCATGGAGGTGCACAAGCTGAAG
CTGAACAATGACGATGTGCTCGATCTGCACTATCTGCACTCGCAGGAGGCGCTGCGCTGC
TTGGAGCTGTTCCTTGCCGAGCATGCCTCGAATCTGCTCAACTCGCAGCAACGCTTCAAG
ACGCTGTACATCATCACGGGGCGCGGATTGCATTCCGCCGATGGCAAACCAATCATCAAG
CAGCGTGTTAAAGCCATGCTGAGAGTTAAGAACATAAGATACACCGAACTGAACCCGGGT
TTCCTCAAGATTAAGC

consensusID : consensus_1200#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 407
fasta sequence

                              [GCAGAATNCGGCCCGACGAGNGTAGAGCTGCTGAAGAAGCGGGCCGAACACGAGAAGCAAAAGCTGCTCGATCTGTTCAGCTCACCCGACCTTCTGCCACCCCGTTCCCCGACCGGGTCGAGTCTGTCCGGCGAGGGAGGCGATCAATTTCCACCTAGAGTCAAGGCGGAAGAGTGTCGCATATCTTGGCCCAGCATCAGTCGTCGAGCTTGAAAGAACTGAATGCCACGCAAAGGCCCCAGTGCAAGGCGAGTTCGAGCGGCAAAATGGTGCCGGGAGCTTTAGGCGCGGACTAGTTTANCTCCGGCCAGGGAGTTTGCGCGTCCATTGGAACCGGNGAACCAAAGGATCGGACAATGTTACCAANCAAGGGCCAGGGGGGCACGTTCCAAAGTCTGGCAATCCAT]

[+] EMBL BX468576             [GCAGAATNCGGCCCGACGAGNGTAGAGCTGCTGAAGAAGCGGGCCGAACACGAGAAGCAAAAGCTGCTCGATCTGTTCAGCTCACCCGACCTTCTGCCACCCCGTTCCCCGACCGGGTCGAGTCTGTCCGGCGAGGGAGGCGATCAATTTCCACCTAGAGTCAAGGCGGAAGAGTGTCGCATATCTTGGCCCAGCATCAGTCGTCGAGCTTGAAAGAACTGAATGCCACGCAAAGGCCCCAGTGCAAGGCGAGTTCGAGCGGCAAAATGGTGCCGGGAGCTTTAGGCGCGGACTAGTTTANCTCCGGCCAGGGAGTTTGCGCGTCCATTGGAACCGGNGAACCAAAGGATCGGACAATGTTACCAANCAAGGGCCAGGGGGGCACGTTCCAAAGTCTGGCAATCCAT]




>consensus_1200#1
GCAGAATNCGGCCCGACGAGNGTAGAGCTGCTGAAGAAGCGGGCCGAACACGAGAAGCAA
AAGCTGCTCGATCTGTTCAGCTCACCCGACCTTCTGCCACCCCGTTCCCCGACCGGGTCG
AGTCTGTCCGGCGAGGGAGGCGATCAATTTCCACCTAGAGTCAAGGCGGAAGAGTGTCGC
ATATCTTGGCCCAGCATCAGTCGTCGAGCTTGAAAGAACTGAATGCCACGCAAAGGCCCC
AGTGCAAGGCGAGTTCGAGCGGCAAAATGGTGCCGGGAGCTTTAGGCGCGGACTAGTTTA
NCTCCGGCCAGGGAGTTTGCGCGTCCATTGGAACCGGNGAACCAAAGGATCGGACAATGT
TACCAANCAAGGGCCAGGGGGGCACGTTCCAAAGTCTGGCAATCCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1200#0      GCGCACAACAATCGCTTCGACGAGACGGTGCAGGTGCTGAACGCCTCCATCCCAGACACC 60
consensus_1200#1      ------------------------------------------------------------
                                                                                  

consensus_1200#0      GTGCGCCAGCAGATGCTGGAGAAGGAGGAGCTGCTGAAGAAGCGGGCCGAACACGAGAAG 120
consensus_1200#1      --GCAGAATNCGGC-CCGACGAGNGTAGAGCTGCTGAAGAAGCGGGCCGAACACGAGAAG 57
                        **   *   *   * *  **  *  *********************************

consensus_1200#0      CAAAAGCTGCTCGATCTGTTCAGCTCACCC-ACCTTC-GCCACCCCGT-CCCCGACCGGG 177
consensus_1200#1      CAAAAGCTGCTCGATCTGTTCAGCTCACCCGACCTTCTGCCACCCCGTTCCCCGACCGGG 117
                      ****************************** ****** ********** ***********

consensus_1200#0      TCGAGTCTGTCCGGCGAGG-AGGCGATCAATTTCCACCTAA--TCAAGGCGGAAGAGTGT 234
consensus_1200#1      TCGAGTCTGTCCGGCGAGGGAGGCGATCAATTTCCACCTAGAGTCAAGGCGGAAGAGTGT 177
                      ******************* ********************   *****************

consensus_1200#0      CGCA-ATCT-GGCCCAGCATCATC--TCGACCT--GAAGAAC-GAATGCCACGCAAAGGC 287
consensus_1200#1      CGCATATCTTGGCCCAGCATCAGTCGTCGAGCTTGAAAGAACTGAATGCCACGCAAAGGC 237
                      **** **** ************    **** **   ****** *****************

consensus_1200#0      CC----GGCAGGCGATTCAGCGCAATGTGCCGGGTTTGGCCGACTATTACTCGCAGATTG 343
consensus_1200#1      CCCAGTGCAAGGCGAGTTCGAGCGGCAAAATGGTGCCGG--GAGCTTTAGGCGCGGACTA 295
                      **    *  ****** *  * **        **    **  **   ***  *** ** * 

consensus_1200#0      CGCGCCTGCACCGGACCAAGATCGACATGTACAACAGCCGGGCGTCCAACTGCATCATGG 403
consensus_1200#1      ---GTTTANCTCCGGCCAGGG--AGTTTGCGCGTCCATTGGAA---CCGGNGAACCAAAG 347
                         *  *    * * *** *       **  *  *    **     *    * * **  *

consensus_1200#0      AGGTGCACAAGCTGAAGCTGAACAATGACGATGTGCTCGATCTGCACTATCTGCACTCGC 463
consensus_1200#1      GATCGGACAA--TGTTACCAANCAAGGGCCAGGGGGGCACGTTCCAAAGTCTGGCAATCC 405
                          * ****  **   *  * *** * * * * *  *    * **   ****      *

consensus_1200#0      AGGAGGCGCTGCGCTGCTTGGAGCTGTTCCTTGCCGAGCATGCCTCGAATCTGCTCAACT 523
consensus_1200#1      AT---------------------------------------------------------- 407
                      *                                                           

consensus_1200#0      CGCAGCAACGCTTCAAGACGCTGTACATCATCACGGGGCGCGGATTGCATTCCGCCGATG 583
consensus_1200#1      ------------------------------------------------------------
                                                                                  

consensus_1200#0      GCAAACCAATCATCAAGCAGCGTGTTAAAGCCATGCTGAGAGTTAAGAACATAAGATACA 643
consensus_1200#1      ------------------------------------------------------------
                                                                                  

consensus_1200#0      CCGAACTGAACCCGGGTTTCCTCAAGATTAAGC 676
consensus_1200#1      ---------------------------------