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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_123#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 985 fasta sequence
[GCAAGAATCGGCACGAGGCGTCGCGTGTGTAGATGCAATCAAAGTGTCGTCCGCCAGCGGTACGATGGTGACGGTCGCGTTGGAAAGTAGTGTTGTTACCGCTGCCGGTTTGGCGGCACTGTTGCTAACGCTGGCGGCGGTGATCGGTACGAGCGGGAACCCACTCGAATGCCCCCGGCCGGCCGCGTCTGGCAGCGCCCCATCCGGTTGGCAACCGCGAACGCCCGAGCAAACGCTGTACGCGTACGTGCGCTGCCTGAACGACTCGTCCGCCAGCATCGAGATGAAGATCCGCTGGGTCATGTGGCAGCCGGACCAGTCGCCCGAGAGCCAGTGCTACGTGAAGTGTGTCAGCGAGGATCTGCGGCTGTACGATCCGGCCCGGCGGCAGTTTGTGCCGGAGCGGTTCGAGCAGCAGGCCCGCGCGTTCCACGAGGATCCCGAGGCGGACGACATCCGGACGCTGTACACGGACGCGCACCGGCTGCTGGCGGGCGAGCTGCCCGACAGCGACTGCTCGACCGTGTTCGCCAAGTACGCACCGTTCTACGCGGTGCACCAGGAGCACATACTGGACATCTTCCATGGGGATCTGCGCAAAATCTTGGTCACGTACCAGCGGGCTCGGGCCGCGCGTCAAACAGATCGGGCAAAGCTTCGTCGACTACTGCGAGAAGCGGTACGGGTTTTGCGTGGGCCGAGGAGGAGCAAGCGGGGCCTTGGCCCGGAATCAGACCGCGGTTGGAGTGTATTCCCTTTTCNGGCAGGGAGGGNTTCCCCGGGCTTGGGTNAATCACACCGCGGAGGGAAAGCGGGGGCNNAAATTGGTNGCAACACTTGTTCCGGGCNTGGACGNATTNTGGTACAGCGCGCGAAAAATTTTCCGGANTAGGGGGGTTCCANGGAGTGTATTGGAGACAGGCGAGACAGCGAAACCTGGACAGAGCCAAGTTGGCCCCACGGGGGGNCGGGAAACGACNGAACC]
[+] EMBL BX467793 [GCAAGAATCGGCACGAGGCGTCGCGTGTGTAGATGCAATCAAAGTGTCGTCCGCCAGCGGTACGATGGTGACGGTCGCGTTGGAAAGTAGTGTTGTTACCGCTGCCGGTTTGGCGGCACTGTTGCTAACGCTGGCGGCGGTGATCGGTACGAGCGGGAACCCACTCGAATGCCCCCGGCCGGCCGCGTCTGGCAGCGCCCCATCCGGTTGGCAACCGCGAACGCCCGAGCAAACGCTGTACGCGTACGTGCGCTGCCTGAACGACTCGTCCGCCAGCATCGAGATGAAGATCCGCTGGGTCATGTGGCAGCCGGACCAGTCGCCCGAGAGCCAGTGCTACGTGAAGTGTGTCAGCGAGGATCTGCGGCTGTACGATCCGGCCCGGCGGCAGTTTGTGCCGGAGCGGTTCGAGCAGCAGGCCCGCGCGTTCCACGAGGATCCCGAGGCGGACGACATCCGGACGCTGTACACGGACGCGCACCGGCTGCTGGCGGGCGAGCTGCCCGACAGCGACTGCTCGACCGTGTTCGCCAAGTACGCACCGTTCTACGCGGTGCACCAGGAGCACATACTGGACATCTTCCATGGGGATCTGCGCAAAATCTTGGTCACGTACCAGCGGGCTCGGGCCGCGCGTCAAACAGATCGGGCAAAGCTTCGTCGACTACTGCGAGAAGCGGTACGGGTTTTGCGTGGGCCGAGGAGGAGCAAGCGGGGCCTTGGCCCGGAATCAGACCGCGGTTGGAGTGTATTCCCTTTTCNGGCAGGGAGGGNTTCCCCGGGCTTGGGTNAATCACACCGCGGAGGGAAAGCGGGGGCNNAAATTGGTNGCAACACTTGTTCCGGGCNTGGACGNATTNTGGTACAGCGCGCGAAAAATTTTCCGGANTAGGGGGGTTCCANGGAGTGTATTGGAGACAGGCGAGACAGCGAAACCTGGACAGAGCCAAGTTGGCCCCACGGGGGGNCGGGAAACGACNGAACC]
consensusID : consensus_123#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence
[CCGCGGACGCGTGGGGTGCGGCATCCACGAGACCACCTACAACTCGATCATGAAGTGCGATGTCGACATCCGTAAGGATCTGTACGCCAACACGGTCCTGTCCGGCGGTACCACCATGTACCCGGGCATCGCCGACCGCATGCAGAAGGAGATCACGGCCCTGGCACCGTCGACCATGAAGATCAAGATCATCGCACCGCCGGAGCGCAAGTACTCCGTCTGGATCGGTGGCTCCATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCTCCAAGCAGGAGTACGACGAGTCCGGCCCATCCATTGTGCACCGAAAGTGCTTCTAAGTTAACGCTTCTAATGGTCCCAAATCGTTGCCGCCGTCGGTCCTGGTTTCGTCGAGCGTAGCCTGGGGTAAAAGGAGAAACAACACACCACATCTCTCGGAGGGATTGCCTCCGCAATCATCACCACCACCACCACCACCCATAGCAGTGTAGAGGGGCAACCCATGATGCGCAGTGGATAACATGCAGGTGGCCGGCGCGTCACTGTGCGTCGTAAGAAGTTGAACTATATGTTAACAGAAGAAGATGACGTGTTGTGCCCTCATGTACTTTGTCGTCACATCAGCCCCCCTGCTTAAGCTCAGCGACGCGGTAGCGATATTATTATATTCTTTTTCACAATACAAACA]
[+] EMBL BM643383 [CCGCGGACGCGTGGGGTGCGGCATCCACGAGACCACCTACAACTCGATCATGAAGTGCGATGTCGACATCCGTAAGGATCTGTACGCCAACACGGTCCTGTCCGGCGGTACCACCATGTACCCGGGCATCGCCGACCGCATGCAGAAGGAGATCACGGCCCTGGCACCGTCGACCATGAAGATCAAGATCATCGCACCGCCGGAGCGCAAGTACTCCGTCTGGATCGGTGGCTCCATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCTCCAAGCAGGAGTACGACGAGTCCGGCCCATCCATTGTGCACCGAAAGTGCTTCTAAGTTAACGCTTCTAATGGTCCCAAATCGTTGCCGCCGTCGGTCCTGGTTTCGTCGAGCGTAGCCTGGGGTAAAAGGAGAAACAACACACCACATCTCTCGGAGGGATTGCCTCCGCAATCATCACCACCACCACCACCACCCATAGCAGTGTAGAGGGGCAACCCATGATGCGCAGTGGATAACATGCAGGTGGCCGGCGCGTCACTGTGCGTCGTAAGAAGTTGAACTATATGTTAACAGAAGAAGATGACGTGTTGTGCCCTCATGTACTTTGTCGTCACATCAGCCCCCCTGCTTAAGCTCAGCGACGCGGTAGCGATATTATTATATTCTTTTTCACAATACAAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_123#0 GCAAGAATCGGCACGAGGCGTCGCGTGTGTAGATGCAATCAAAGTGTCGTCCGCCAGCGG 60
consensus_123#1 ------------------------------------------------------------
consensus_123#0 TACGATGGTGACGGTCGCGTTGGAAAGTAGTGTTGTTACCGCTGCCGGTTTGGCGGCACT 120
consensus_123#1 ------------------------------------------------------------
consensus_123#0 GTTGCTAACGCTGGCGGCGGTGATCGGTACGAGCGGGAACCCACTCGAATGCCCCCGGCC 180
consensus_123#1 ------------------------------------------------------------
consensus_123#0 GGCCGCGTCTGGCAGCGCCCCATCCGGTTGGCAACCGCGAACGCCCGAGCAAACGCTGTA 240
consensus_123#1 ------------------------------------------------------------
consensus_123#0 CGCGTACGTGCGCTGCCTGAACGACTCGTCCGCCAGCATCGAGATGAAGATCCGCTGGGT 300
consensus_123#1 -------------------------------------------CCGCGGACGCGTGGGGT 17
* ** ** ****
consensus_123#0 CATGTGGCAGCCGGACCAGTCGCCCGAGAGCCAGTGCTACGTGAAGT--GTGTCAGCGAG 358
consensus_123#1 GCGGCATCCACGAGACCACCTACAACTCGATCA-TGAAGTGCGATGTCGACATCCGTAAG 76
* * * ***** * ** ** * ** ** ** * **
consensus_123#0 GATCTG--CGGCTGTACGATCCGGCCCGGCGG---CAGTTTGTGCCGGAGCGGTTCGAGC 413
consensus_123#1 GATCTGTACGCCAACACGGTCCTGTCCGGCGGTACCACCATGTACCCGGGCATCGCCGAC 136
****** ** * *** *** * ******* ** *** ** * ** * *
consensus_123#0 AGCAGGCCCGCGCGTTCCACGAGGATCCCGAGGCGGACGACATCCGGACGCTGTACACGG 473
consensus_123#1 CGCATGCAGAAGGAGATCACG---GCCCTGGCACCGTCGAC--CATGAAGATCAAGATCA 191
*** ** * **** ** * * * **** * ** * * * *
consensus_123#0 ACGCGCACCGGCTGCTGGCGGGCGAGCTGCCCGACAGCGACTGCTCGACCGTG--TTCGC 531
consensus_123#1 TCG--CACCGCCGGAGCGCAAGTACTCCGTCTGG-ATCGGTGGCTCCATCCTGGCCTCGC 248
** ***** * * ** * * * * * * ** **** * * ** ****
consensus_123#0 CAAGTACGCACCGTTCTACGCGGTGCACCAGGAGCACATACTGGACATCTTCCATGGGGA 591
consensus_123#1 TGTCCACCTTCCAGCAGATGTGGATCTCCAAGCAGGAGTAC--GAC-----------GAG 295
** ** * * ** * *** * *** *** *
consensus_123#0 TCTGCGCAAAATCTTGGTCACGTACCAGCGGGCTCGGGCCGCGCGTCAAACAGATCGGGC 651
consensus_123#1 TCCGGCCCATCCATTGTGCACCGAAAGTGCTTCTAAGTTAACGCTTCTAATGGTCC---C 352
** * * * *** *** * ** * *** ** ** * * *
consensus_123#0 AAAGCTTCGTCGACTACTGCGAGAAGCGGTACGGGTTTTGCGTGGGCCGAGGAGGAGCAA 711
consensus_123#1 AAATCGTTGCCGCCGTCGGTCCTGGTTTCGTCGAGCGTAGCCTGGGGTAAAAGGAGAAAC 412
*** * * * ** * * * ** * * ** **** * * *
consensus_123#0 GCGGGGCCTTGGCCCGGAATCAGACCGCGGTTGGAGTGTATTCCCTTTTCNGGCAGGGAG 771
consensus_123#1 AACACACCACATCTCTCGGAGGGATTGCCTCCGCAAT-CATCACCACCACCACCACCACC 471
** * * ** ** * * * ** ** * **
consensus_123#0 GGNTTCCCCGGGCTTGGGTNAATCACACCGCGGAGGGAAAGCGGGGGCNNAAATTGGTNG 831
consensus_123#1 CATAGCAGTGTAGAGGGGCAACCCATGATGCGCAGTGGATA-ACATGCAGGTGGCCGGCG 530
* * *** * ** *** ** * * ** * *
consensus_123#0 CAACACT-TGTTCCGGGCNTGGACGNATTNTGGTACAGCGCGCGAAAAATTTTCCGGANT 890
consensus_123#1 CGTCACTGTGCGTCGTAAGAAGTTGAACTATATGTTAACAGAAGAAGA------TGACGT 584
* **** ** ** * * * * * * * *** * * *
consensus_123#0 AGGGGGGTTCCANGGAGTGTATTGG-AGACAGGCGAGACAGCGAAACCTGGACAGAGCCA 949
consensus_123#1 GTTGTGCCCTCATGTACTTTGTCGTCACATCAGCCCCCCTGCTTAAGCTCAGCGACGCGG 644
* * ** * * * * * * * * ** * ** ** ** * **
consensus_123#0 AGTTGGCCCCACGGGGGGNCGGGAAACGACNGAACC- 985
consensus_123#1 TAGCGATATTATTATATTCTTTTTCACAATACAAACA 681
* * ** * ** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||