cluster # 1249

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1249 cluster # 1249 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1249#0 length = 388 sequences # 1

consensus_1249#1 length = 335 sequences # 1

consensusID : consensus_1249#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence

                              [GCAGAATCGGCACCAGGGGGATTCAGCATCTTCGCCGTCGCTTGCTGGGTGAGTTGAGGCCGCTGCAGCGCAACAACAATGGTGGTGGTGGCACCATGGTAATACCCTCCGATGCTTCCTCCGCGTCCACCGAGGACAACAAGGAGAATGTGATTGTTGTGGGCGGCGGGGGAGGCGGGCTGGTGGTAAGCAGCGCCGCGTGTGCGCTGTTTCCGGACGCGCCGACCACGCCGAAGGTGAGCCGCAAGGCCCTGACCGGGTCGAGCCGCTGAAACGACGGGGGCGGGGCTGCACATACAACCTTCAGGCAGACACCACCACCATCACCACCATCTGCAGCATCATAATCACCACCATCATCACCATCACAGTAGCCATCTTCATCAAA]

[+] EMBL BX466421             [GCAGAATCGGCACCAGGGGGATTCAGCATCTTCGCCGTCGCTTGCTGGGTGAGTTGAGGCCGCTGCAGCGCAACAACAATGGTGGTGGTGGCACCATGGTAATACCCTCCGATGCTTCCTCCGCGTCCACCGAGGACAACAAGGAGAATGTGATTGTTGTGGGCGGCGGGGGAGGCGGGCTGGTGGTAAGCAGCGCCGCGTGTGCGCTGTTTCCGGACGCGCCGACCACGCCGAAGGTGAGCCGCAAGGCCCTGACCGGGTCGAGCCGCTGAAACGACGGGGGCGGGGCTGCACATACAACCTTCAGGCAGACACCACCACCATCACCACCATCTGCAGCATCATAATCACCACCATCATCACCATCACAGTAGCCATCTTCATCAAA]




>consensus_1249#0
GCAGAATCGGCACCAGGGGGATTCAGCATCTTCGCCGTCGCTTGCTGGGTGAGTTGAGGC
CGCTGCAGCGCAACAACAATGGTGGTGGTGGCACCATGGTAATACCCTCCGATGCTTCCT
CCGCGTCCACCGAGGACAACAAGGAGAATGTGATTGTTGTGGGCGGCGGGGGAGGCGGGC
TGGTGGTAAGCAGCGCCGCGTGTGCGCTGTTTCCGGACGCGCCGACCACGCCGAAGGTGA
GCCGCAAGGCCCTGACCGGGTCGAGCCGCTGAAACGACGGGGGCGGGGCTGCACATACAA
CCTTCAGGCAGACACCACCACCATCACCACCATCTGCAGCATCATAATCACCACCATCAT
CACCATCACAGTAGCCATCTTCATCAAA

consensusID : consensus_1249#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 335
fasta sequence

                              [GTACGAAGCAGCAGCAGCATATGCTGGCAGCCGGCAGCAACAATGGCACAGTAATCGCACCATCGGAAGAAAAGCCGCAGTACGATGCGGGAGCGGGAGAAGGTGGAGGAGATGAAAGCGATGAAGGAGGGGGAACAGCATCTTCGCCGTCGCTTGCTGGTGAGTTGAGGCCGCTGCAGCGCAACAACAATGGTGGTGGTGGCACCATGGTAATACCCTCCGATGCTTCCTCCGCGTCCACCGAGGACAACAAGGAGAATGTGATTGTTGTGGGCGGCGGGGGAGGCGGGCTGGTGGTAAGCAGCGCCGCGTGTGCGCTGTTTCCGGACGCGCCG]

[+] EMBL AGA284148            [GTACGAAGCAGCAGCAGCATATGCTGGCAGCCGGCAGCAACAATGGCACAGTAATCGCACCATCGGAAGAAAAGCCGCAGTACGATGCGGGAGCGGGAGAAGGTGGAGGAGATGAAAGCGATGAAGGAGGGGGAACAGCATCTTCGCCGTCGCTTGCTGGTGAGTTGAGGCCGCTGCAGCGCAACAACAATGGTGGTGGTGGCACCATGGTAATACCCTCCGATGCTTCCTCCGCGTCCACCGAGGACAACAAGGAGAATGTGATTGTTGTGGGCGGCGGGGGAGGCGGGCTGGTGGTAAGCAGCGCCGCGTGTGCGCTGTTTCCGGACGCGCCG]




>consensus_1249#1
GTACGAAGCAGCAGCAGCATATGCTGGCAGCCGGCAGCAACAATGGCACAGTAATCGCAC
CATCGGAAGAAAAGCCGCAGTACGATGCGGGAGCGGGAGAAGGTGGAGGAGATGAAAGCG
ATGAAGGAGGGGGAACAGCATCTTCGCCGTCGCTTGCTGGTGAGTTGAGGCCGCTGCAGC
GCAACAACAATGGTGGTGGTGGCACCATGGTAATACCCTCCGATGCTTCCTCCGCGTCCA
CCGAGGACAACAAGGAGAATGTGATTGTTGTGGGCGGCGGGGGAGGCGGGCTGGTGGTAA
GCAGCGCCGCGTGTGCGCTGTTTCCGGACGCGCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1249#0      ------------------------------------------------------------
consensus_1249#1      GTACGAAGCAGCAGCAGCATATGCTGGCAGCCGGCAGCAACAATGGCACAGTAATCGCAC 60
                                                                                  

consensus_1249#0      ---------------------------------------------------GCAGAATCG 9
consensus_1249#1      CATCGGAAGAAAAGCCGCAGTACGATGCGGGAGCGGGAGAAGGTGGAGGAGATGAAAGCG 120
                                                                             ** **

consensus_1249#0      GCACCAG-GGGGATTCAGCATCTTCGCCGTCGCTTGCTGGGTGAGTTGAGGCCGCTGCAG 68
consensus_1249#1      ATGAAGGAGGGGGAACAGCATCTTCGCCGTCGCTTGCTGG-TGAGTTGAGGCCGCTGCAG 179
                            * ****   ************************* *******************

consensus_1249#0      CGCAACAACAATGGTGGTGGTGGCACCATGGTAATACCCTCCGATGCTTCCTCCGCGTCC 128
consensus_1249#1      CGCAACAACAATGGTGGTGGTGGCACCATGGTAATACCCTCCGATGCTTCCTCCGCGTCC 239
                      ************************************************************

consensus_1249#0      ACCGAGGACAACAAGGAGAATGTGATTGTTGTGGGCGGCGGGGGAGGCGGGCTGGTGGTA 188
consensus_1249#1      ACCGAGGACAACAAGGAGAATGTGATTGTTGTGGGCGGCGGGGGAGGCGGGCTGGTGGTA 299
                      ************************************************************

consensus_1249#0      AGCAGCGCCGCGTGTGCGCTGTTTCCGGACGCGCCGACCACGCCGAAGGTGAGCCGCAAG 248
consensus_1249#1      AGCAGCGCCGCGTGTGCGCTGTTTCCGGACGCGCCG------------------------ 335
                      ************************************                        

consensus_1249#0      GCCCTGACCGGGTCGAGCCGCTGAAACGACGGGGGCGGGGCTGCACATACAACCTTCAGG 308
consensus_1249#1      ------------------------------------------------------------
                                                                                  

consensus_1249#0      CAGACACCACCACCATCACCACCATCTGCAGCATCATAATCACCACCATCATCACCATCA 368
consensus_1249#1      ------------------------------------------------------------
                                                                                  

consensus_1249#0      CAGTAGCCATCTTCATCAAA 388
consensus_1249#1      --------------------