cluster # 1250

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Anopheles gambiae
cluster # 1250 cluster # 1250 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1250#0 length = 639 sequences # 1

consensus_1250#1 length = 623 sequences # 1

consensusID : consensus_1250#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 639
fasta sequence

                              [CCGGACGACGCGCTGCACATCAAGGCGGAACAGATCGTCGAAGCACACTTCGGAGCGGTGCGAGTCGTAGCGGAGGGCAAGGGCTCGCAGCTGCTCATCGGTACGACGAAGAACTGCATACTCTCCGGCGACTTTACCCTCAGCCTCGTGCCGATCGTGATGGGCCACACGGACATTCTGTGGTCGCTGGCAACGCATCCGCAGGTGGCACAGTTCGTCACCGGCGGGCGGGACAGGTTGCTGCAGCTGTGGGACTCGCTGTCGCACTCGGTCGTGTGGAGCAAGGACATCGGCGAACCGATCCACGCGGTCCAGATAGCGAATGCGGGTGACGTGATTGTGGCGGGCGGTGTCGGTGGCCGTTGGTCGGTGTTCGATATCGTAACCCGGGAGCTGCTGGCCACGTACACGGACGGGCAGGAGGTGATACAGTGCATGCAGTTCTCACCCGACGGTAATCTGCTGGCGGTCGGCTCCAAAGACAACTGCATCTACATCTACCAGTGCACGAAGGTGGCGCACCGGTTTTCCAAGATTGGAAAGTGCACGGGTCATTCTAGTTTCATATCACATCTCGATTGGTCCAAGGACAGTCAAGTGTTGCGATCGAATTCGGGCGACTACGAAATACTATACTGG]

[+] EMBL BM598783             [CCGGACGACGCGCTGCACATCAAGGCGGAACAGATCGTCGAAGCACACTTCGGAGCGGTGCGAGTCGTAGCGGAGGGCAAGGGCTCGCAGCTGCTCATCGGTACGACGAAGAACTGCATACTCTCCGGCGACTTTACCCTCAGCCTCGTGCCGATCGTGATGGGCCACACGGACATTCTGTGGTCGCTGGCAACGCATCCGCAGGTGGCACAGTTCGTCACCGGCGGGCGGGACAGGTTGCTGCAGCTGTGGGACTCGCTGTCGCACTCGGTCGTGTGGAGCAAGGACATCGGCGAACCGATCCACGCGGTCCAGATAGCGAATGCGGGTGACGTGATTGTGGCGGGCGGTGTCGGTGGCCGTTGGTCGGTGTTCGATATCGTAACCCGGGAGCTGCTGGCCACGTACACGGACGGGCAGGAGGTGATACAGTGCATGCAGTTCTCACCCGACGGTAATCTGCTGGCGGTCGGCTCCAAAGACAACTGCATCTACATCTACCAGTGCACGAAGGTGGCGCACCGGTTTTCCAAGATTGGAAAGTGCACGGGTCATTCTAGTTTCATATCACATCTCGATTGGTCCAAGGACAGTCAAGTGTTGCGATCGAATTCGGGCGACTACGAAATACTATACTGG]




>consensus_1250#0
CCGGACGACGCGCTGCACATCAAGGCGGAACAGATCGTCGAAGCACACTTCGGAGCGGTG
CGAGTCGTAGCGGAGGGCAAGGGCTCGCAGCTGCTCATCGGTACGACGAAGAACTGCATA
CTCTCCGGCGACTTTACCCTCAGCCTCGTGCCGATCGTGATGGGCCACACGGACATTCTG
TGGTCGCTGGCAACGCATCCGCAGGTGGCACAGTTCGTCACCGGCGGGCGGGACAGGTTG
CTGCAGCTGTGGGACTCGCTGTCGCACTCGGTCGTGTGGAGCAAGGACATCGGCGAACCG
ATCCACGCGGTCCAGATAGCGAATGCGGGTGACGTGATTGTGGCGGGCGGTGTCGGTGGC
CGTTGGTCGGTGTTCGATATCGTAACCCGGGAGCTGCTGGCCACGTACACGGACGGGCAG
GAGGTGATACAGTGCATGCAGTTCTCACCCGACGGTAATCTGCTGGCGGTCGGCTCCAAA
GACAACTGCATCTACATCTACCAGTGCACGAAGGTGGCGCACCGGTTTTCCAAGATTGGA
AAGTGCACGGGTCATTCTAGTTTCATATCACATCTCGATTGGTCCAAGGACAGTCAAGTG
TTGCGATCGAATTCGGGCGACTACGAAATACTATACTGG

consensusID : consensus_1250#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence

                              [CCGCGGACGCGTGGGCGTCGAAGCACACTTCGGAGCGGTGCGAGTCGTAGCGGAGGGCAAGGGCTCGCAGCTGCTCATCGGTACGACGAAGAACTGCATACTTTCCGGCGACTTTACCCTCAGCCTCGTGCCGATCGTGATGGGCCACACGGACATTCTGTGGTCGCTGGCAACGCATCCGCAGGTGGCACAGTTCGTCACCGGCGGGCGGGACAGGTTGCTGCAGCTGTGGGACTCGCTGTCGCACTCGGTCGTGTGGAGCAAGGACATCGGCGAACCGATCCACGCGGTCCAGATAGCGAATGCGGGCGACGTGATTGTGGCGGGCGGTGTCGGTGGCCGTTGGTCGGTGTTCGATATCGTAACCCGGGAGCTGTTGGCCACGTACACGGACGGGCAGGAGGTGATACAGTGCATGCAGTTCTCACCCGACGGTAATCTGCTGGCGGTCGGCTCCAAAGACAACTGCATCTACATCTACCAGTGCACGAAGGTGGCGCACCGGTTTTCCAAGATTGGAAAGTGCACGGGTCATTCTAGTTTCATATCACATCTCGATTGGTCCAAGGACAGTCAAGTGTTGCGATCGAACTCGGGCGACTACGAAATACTATACTGGAATC]

[+] EMBL BM586253             [CCGCGGACGCGTGGGCGTCGAAGCACACTTCGGAGCGGTGCGAGTCGTAGCGGAGGGCAAGGGCTCGCAGCTGCTCATCGGTACGACGAAGAACTGCATACTTTCCGGCGACTTTACCCTCAGCCTCGTGCCGATCGTGATGGGCCACACGGACATTCTGTGGTCGCTGGCAACGCATCCGCAGGTGGCACAGTTCGTCACCGGCGGGCGGGACAGGTTGCTGCAGCTGTGGGACTCGCTGTCGCACTCGGTCGTGTGGAGCAAGGACATCGGCGAACCGATCCACGCGGTCCAGATAGCGAATGCGGGCGACGTGATTGTGGCGGGCGGTGTCGGTGGCCGTTGGTCGGTGTTCGATATCGTAACCCGGGAGCTGTTGGCCACGTACACGGACGGGCAGGAGGTGATACAGTGCATGCAGTTCTCACCCGACGGTAATCTGCTGGCGGTCGGCTCCAAAGACAACTGCATCTACATCTACCAGTGCACGAAGGTGGCGCACCGGTTTTCCAAGATTGGAAAGTGCACGGGTCATTCTAGTTTCATATCACATCTCGATTGGTCCAAGGACAGTCAAGTGTTGCGATCGAACTCGGGCGACTACGAAATACTATACTGGAATC]




>consensus_1250#1
CCGCGGACGCGTGGGCGTCGAAGCACACTTCGGAGCGGTGCGAGTCGTAGCGGAGGGCAA
GGGCTCGCAGCTGCTCATCGGTACGACGAAGAACTGCATACTTTCCGGCGACTTTACCCT
CAGCCTCGTGCCGATCGTGATGGGCCACACGGACATTCTGTGGTCGCTGGCAACGCATCC
GCAGGTGGCACAGTTCGTCACCGGCGGGCGGGACAGGTTGCTGCAGCTGTGGGACTCGCT
GTCGCACTCGGTCGTGTGGAGCAAGGACATCGGCGAACCGATCCACGCGGTCCAGATAGC
GAATGCGGGCGACGTGATTGTGGCGGGCGGTGTCGGTGGCCGTTGGTCGGTGTTCGATAT
CGTAACCCGGGAGCTGTTGGCCACGTACACGGACGGGCAGGAGGTGATACAGTGCATGCA
GTTCTCACCCGACGGTAATCTGCTGGCGGTCGGCTCCAAAGACAACTGCATCTACATCTA
CCAGTGCACGAAGGTGGCGCACCGGTTTTCCAAGATTGGAAAGTGCACGGGTCATTCTAG
TTTCATATCACATCTCGATTGGTCCAAGGACAGTCAAGTGTTGCGATCGAACTCGGGCGA
CTACGAAATACTATACTGGAATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1250#0      CCGGACGACGCGCTGCACATCAAGGCGGAACAGATCGTCGAAGCACACTTCGGAGCGGTG 60
consensus_1250#1      -------------------CCGCGGACGCGTGGG-CGTCGAAGCACACTTCGGAGCGGTG 40
                                          *  **  *    *  *************************

consensus_1250#0      CGAGTCGTAGCGGAGGGCAAGGGCTCGCAGCTGCTCATCGGTACGACGAAGAACTGCATA 120
consensus_1250#1      CGAGTCGTAGCGGAGGGCAAGGGCTCGCAGCTGCTCATCGGTACGACGAAGAACTGCATA 100
                      ************************************************************

consensus_1250#0      CTCTCCGGCGACTTTACCCTCAGCCTCGTGCCGATCGTGATGGGCCACACGGACATTCTG 180
consensus_1250#1      CTTTCCGGCGACTTTACCCTCAGCCTCGTGCCGATCGTGATGGGCCACACGGACATTCTG 160
                      ** *********************************************************

consensus_1250#0      TGGTCGCTGGCAACGCATCCGCAGGTGGCACAGTTCGTCACCGGCGGGCGGGACAGGTTG 240
consensus_1250#1      TGGTCGCTGGCAACGCATCCGCAGGTGGCACAGTTCGTCACCGGCGGGCGGGACAGGTTG 220
                      ************************************************************

consensus_1250#0      CTGCAGCTGTGGGACTCGCTGTCGCACTCGGTCGTGTGGAGCAAGGACATCGGCGAACCG 300
consensus_1250#1      CTGCAGCTGTGGGACTCGCTGTCGCACTCGGTCGTGTGGAGCAAGGACATCGGCGAACCG 280
                      ************************************************************

consensus_1250#0      ATCCACGCGGTCCAGATAGCGAATGCGGGTGACGTGATTGTGGCGGGCGGTGTCGGTGGC 360
consensus_1250#1      ATCCACGCGGTCCAGATAGCGAATGCGGGCGACGTGATTGTGGCGGGCGGTGTCGGTGGC 340
                      ***************************** ******************************

consensus_1250#0      CGTTGGTCGGTGTTCGATATCGTAACCCGGGAGCTGCTGGCCACGTACACGGACGGGCAG 420
consensus_1250#1      CGTTGGTCGGTGTTCGATATCGTAACCCGGGAGCTGTTGGCCACGTACACGGACGGGCAG 400
                      ************************************ ***********************

consensus_1250#0      GAGGTGATACAGTGCATGCAGTTCTCACCCGACGGTAATCTGCTGGCGGTCGGCTCCAAA 480
consensus_1250#1      GAGGTGATACAGTGCATGCAGTTCTCACCCGACGGTAATCTGCTGGCGGTCGGCTCCAAA 460
                      ************************************************************

consensus_1250#0      GACAACTGCATCTACATCTACCAGTGCACGAAGGTGGCGCACCGGTTTTCCAAGATTGGA 540
consensus_1250#1      GACAACTGCATCTACATCTACCAGTGCACGAAGGTGGCGCACCGGTTTTCCAAGATTGGA 520
                      ************************************************************

consensus_1250#0      AAGTGCACGGGTCATTCTAGTTTCATATCACATCTCGATTGGTCCAAGGACAGTCAAGTG 600
consensus_1250#1      AAGTGCACGGGTCATTCTAGTTTCATATCACATCTCGATTGGTCCAAGGACAGTCAAGTG 580
                      ************************************************************

consensus_1250#0      TTGCGATCGAATTCGGGCGACTACGAAATACTATACTGG---- 639
consensus_1250#1      TTGCGATCGAACTCGGGCGACTACGAAATACTATACTGGAATC 623
                      *********** ***************************