cluster # 1277

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Anopheles gambiae
cluster # 1277 cluster # 1277 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1277#0 length = 703 sequences # 1

consensus_1277#1 length = 558 sequences # 1

consensusID : consensus_1277#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 703
fasta sequence

                              [GCCAGAATCGGCACGNGGGCTTGCGTGTAGTTCGGCGGCTAAAGCGCCTACTTTGTAGCGCACGTAACGTTATTTCTGGCTGGTGTTCTAAGTGATAGTGTAAAAGTAAAGGTATAAAGTATGTGGTGAAGAGGCAAGATTACACGGCGTTGGGTACTATGCATTCTCCACCGACCAGGAGGAACGCAACCGACAGCGGGACGAGCTGGATTCAATACGCGAAACAACGATGGAAGCGCAGAAGGAGCGCGAAGCACTGCGGCAGGCACGCGACAAGCTCATCGCCGACAGGGTAAAGGCAGCCCGGGCACGACAGCGAGCACGCCAAAGGTTTACCGCCCGAGGAGGACGAGGACAGTAGCAAGCAACAACAGACCGAAGCATCCGATCAGCTGTACGATCCGGTGGAGGAACGACGTAAACGCAAGGCGGAGGAAAAGCAGCGCAAGCGAAAGGAAAAGGAAGAACGCCGGCAGGGAGCGGGAACGGGCGGACCATGTACGGCCGGTGGGACGAGGGCCAAGGAGCAGGAATCCCGAACNGATTCAGGGAGTGGGTTCCGGGCGAAAGGAGAAAATTCATTTCTATCCCAGGCAGCGAATGGAACGATCTAAAGCGAAGCGAACGGATTGCCGAATTCGCTCCACCAGCCGTCGAAACGGCCAGCCACGGCACGGTCCCGAAGTTGGACCACCAAAAGGCC]

[+] EMBL BX467887             [GCCAGAATCGGCACGNGGGCTTGCGTGTAGTTCGGCGGCTAAAGCGCCTACTTTGTAGCGCACGTAACGTTATTTCTGGCTGGTGTTCTAAGTGATAGTGTAAAAGTAAAGGTATAAAGTATGTGGTGAAGAGGCAAGATTACACGGCGTTGGGTACTATGCATTCTCCACCGACCAGGAGGAACGCAACCGACAGCGGGACGAGCTGGATTCAATACGCGAAACAACGATGGAAGCGCAGAAGGAGCGCGAAGCACTGCGGCAGGCACGCGACAAGCTCATCGCCGACAGGGTAAAGGCAGCCCGGGCACGACAGCGAGCACGCCAAAGGTTTACCGCCCGAGGAGGACGAGGACAGTAGCAAGCAACAACAGACCGAAGCATCCGATCAGCTGTACGATCCGGTGGAGGAACGACGTAAACGCAAGGCGGAGGAAAAGCAGCGCAAGCGAAAGGAAAAGGAAGAACGCCGGCAGGGAGCGGGAACGGGCGGACCATGTACGGCCGGTGGGACGAGGGCCAAGGAGCAGGAATCCCGAACNGATTCAGGGAGTGGGTTCCGGGCGAAAGGAGAAAATTCATTTCTATCCCAGGCAGCGAATGGAACGATCTAAAGCGAAGCGAACGGATTGCCGAATTCGCTCCACCAGCCGTCGAAACGGCCAGCCACGGCACGGTCCCGAAGTTGGACCACCAAAAGGCC]




>consensus_1277#0
GCCAGAATCGGCACGNGGGCTTGCGTGTAGTTCGGCGGCTAAAGCGCCTACTTTGTAGCG
CACGTAACGTTATTTCTGGCTGGTGTTCTAAGTGATAGTGTAAAAGTAAAGGTATAAAGT
ATGTGGTGAAGAGGCAAGATTACACGGCGTTGGGTACTATGCATTCTCCACCGACCAGGA
GGAACGCAACCGACAGCGGGACGAGCTGGATTCAATACGCGAAACAACGATGGAAGCGCA
GAAGGAGCGCGAAGCACTGCGGCAGGCACGCGACAAGCTCATCGCCGACAGGGTAAAGGC
AGCCCGGGCACGACAGCGAGCACGCCAAAGGTTTACCGCCCGAGGAGGACGAGGACAGTA
GCAAGCAACAACAGACCGAAGCATCCGATCAGCTGTACGATCCGGTGGAGGAACGACGTA
AACGCAAGGCGGAGGAAAAGCAGCGCAAGCGAAAGGAAAAGGAAGAACGCCGGCAGGGAG
CGGGAACGGGCGGACCATGTACGGCCGGTGGGACGAGGGCCAAGGAGCAGGAATCCCGAA
CNGATTCAGGGAGTGGGTTCCGGGCGAAAGGAGAAAATTCATTTCTATCCCAGGCAGCGA
ATGGAACGATCTAAAGCGAAGCGAACGGATTGCCGAATTCGCTCCACCAGCCGTCGAAAC
GGCCAGCCACGGCACGGTCCCGAAGTTGGACCACCAAAAGGCC

consensusID : consensus_1277#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 558
fasta sequence

                              [CCGGCAGCACCGACTCGGAATCCTCGGACAGTGAAGGTGTGGAAGACGGAGACAAATGGGTTGAGTACACCGATTGCTTAGGACGCACGAGAAAGTGTCTCAAGAAGGACTTGAAAGAGTGTTTGGCTCGTGATAAAGAGCTGGCTAAATCGATGGCACCGCGCGAAGGACAACGCAGAGAGGATTTGCAAGGTTCTTCTAGTGTGCATACTGTACCACTAGCGAGACCAGAGACGTTGCCGAGTACCAGCACGGATGCACAAGAAGAGGAAGACGAGGACGGGGAAATGGTCGGTCCAATGCCTCCTGCGATGAGTCGAACTGACGATACAGATCTGGGTGAACGGTTCCTGGAGATGAAAGAGCAGTGGGCACAGCAGGAAGAAGCTAATCTGGAGAAGGGTTCCATACACTACCAGGACGTGCTGTTTAATGAGGCAAGACTACACGGCGTTGGGTACTATGCATTCTCCACCGACCAGGAGGAACGCAACCGACAGCGGGACGAGCTGGATTCAATACGCGAAACAACGATGGAAGCGCAGAAGGAGCGCGAAG]

[+] EMBL BM611851             [CCGGCAGCACCGACTCGGAATCCTCGGACAGTGAAGGTGTGGAAGACGGAGACAAATGGGTTGAGTACACCGATTGCTTAGGACGCACGAGAAAGTGTCTCAAGAAGGACTTGAAAGAGTGTTTGGCTCGTGATAAAGAGCTGGCTAAATCGATGGCACCGCGCGAAGGACAACGCAGAGAGGATTTGCAAGGTTCTTCTAGTGTGCATACTGTACCACTAGCGAGACCAGAGACGTTGCCGAGTACCAGCACGGATGCACAAGAAGAGGAAGACGAGGACGGGGAAATGGTCGGTCCAATGCCTCCTGCGATGAGTCGAACTGACGATACAGATCTGGGTGAACGGTTCCTGGAGATGAAAGAGCAGTGGGCACAGCAGGAAGAAGCTAATCTGGAGAAGGGTTCCATACACTACCAGGACGTGCTGTTTAATGAGGCAAGACTACACGGCGTTGGGTACTATGCATTCTCCACCGACCAGGAGGAACGCAACCGACAGCGGGACGAGCTGGATTCAATACGCGAAACAACGATGGAAGCGCAGAAGGAGCGCGAAG]




>consensus_1277#1
CCGGCAGCACCGACTCGGAATCCTCGGACAGTGAAGGTGTGGAAGACGGAGACAAATGGG
TTGAGTACACCGATTGCTTAGGACGCACGAGAAAGTGTCTCAAGAAGGACTTGAAAGAGT
GTTTGGCTCGTGATAAAGAGCTGGCTAAATCGATGGCACCGCGCGAAGGACAACGCAGAG
AGGATTTGCAAGGTTCTTCTAGTGTGCATACTGTACCACTAGCGAGACCAGAGACGTTGC
CGAGTACCAGCACGGATGCACAAGAAGAGGAAGACGAGGACGGGGAAATGGTCGGTCCAA
TGCCTCCTGCGATGAGTCGAACTGACGATACAGATCTGGGTGAACGGTTCCTGGAGATGA
AAGAGCAGTGGGCACAGCAGGAAGAAGCTAATCTGGAGAAGGGTTCCATACACTACCAGG
ACGTGCTGTTTAATGAGGCAAGACTACACGGCGTTGGGTACTATGCATTCTCCACCGACC
AGGAGGAACGCAACCGACAGCGGGACGAGCTGGATTCAATACGCGAAACAACGATGGAAG
CGCAGAAGGAGCGCGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1277#0      GCCAGAATCGGCACGNGGGCTTGCGTGTAGTTCGGCGGCTAAAGCGCCTACTTTGTAGCG 60
consensus_1277#1      ------------------------------------------------------------
                                                                                  

consensus_1277#0      CACGTAACGTTATTTCTGGCTGGTGTTCTAAGTGATAGTGTAAAAGTAAAGGTATAAAGT 120
consensus_1277#1      ---------------CCGGCAGCACCGACTCGGAATCCTCGGACAGTGAAGGTGTGGAAG 45
                                     * *** *         *  **  *   * *** ***** *  *  

consensus_1277#0      ATGTGGTGAAGAGGCAAGATTACACGGCGTTGGGTACTATGCATTCTCCACCGAC-CAGG 179
consensus_1277#1      ACGGAGACAAATGGGTTGAGTACACCG-ATTGCTTAGGACGCACGAGAAAGTGTCTCAAG 104
                      * *  *  **  **   ** ***** *  ***  **  * ***      *  * * ** *

consensus_1277#0      AGGAACGCAACCGACAGCGGGACGAGCTGGATTCAATACGCGAAACAACGATGGAAGCGC 239
consensus_1277#1      AAGGACTTGAAAGAGTGTTTGGCTCGT--GATAAAGAGCTGGCTAAATCGATGGCACCGC 162
                      * * **   *  **  *   * *  *   ***  *   *  *  * * ****** * ***

consensus_1277#0      A-GAAGGA--GCGCGAAGCACTGCGGCAGGCACGCGACAAGCTCATCGCCGACAGGGTAA 296
consensus_1277#1      GCGAAGGACAACGCAGAGAGGATTTGCAAG-GTTCTTCTAGTGTGCATACTGTACCACTA 221
                        ******   ***  **       *** *    *  * **        *   *     *

consensus_1277#0      AGGCAGCCCGGGCACGACAGCGAGCAC-GCCAAAGGTTTACCGCCCGAGGAGGACGAGGA 355
consensus_1277#1      GCG-AGACCAGAGACGTTGCCGAGTACCAGCACGGATGCACAAGAAGAGGAAGACGAGGA 280
                        * ** ** *  ***    **** **   **  * *  **     ***** ********

consensus_1277#0      CAGTAGCAAGCAACAACAGACCGAAGCATCCGATCAGCTGTACGATCCGGTGGAGGAACG 415
consensus_1277#1      CGG-GGAAATGGTCGGTCCAATGCCTCCTGCGATGAGTCGAACTGAC-GATACAG-ATCT 337
                      * *  * **    *     *  *   * * **** **  * **   * * *  ** * * 

consensus_1277#0      ACGTAAACG---CAAGGCGGAGGAAAAGCAGCGCAAGCGAAAGGAAAAGGAAGAACGCCG 472
consensus_1277#1      GGGTGAACGGTTCCTGGAGATGAAAGAGCAGTGGGCACAGCAGGAAGAAGCTAATCTGGA 397
                        ** ****   *  ** *  * ** ***** *    *   ***** * *   * *    

consensus_1277#0      GCAGGGAGCGGGA-ACGGGCGGACCATGTACGGCCGGTGGGACGAGG---------GCCA 522
consensus_1277#1      GAAGGGTTCCATACACTACCAGGACGTGC-TGTTTAATGAGGCAAGACTACACGGCGTTG 456
                      * ****  *   * **   * *  * **   *     ** * * **          *   

consensus_1277#0      AGGAGCAGGAATCCCGAACNGATTCAGGGAGTGGGTTCCGGGCGAAAGGAGAAAATTCAT 582
consensus_1277#1      GGTACTATGCATTCTCCACCGAC-CAGGAGGAACGCAACCGACAGCGGGACGAGCTGGAT 515
                       * *  * * ** *   ** **  ****  *   *   * * *    ***  *  *  **

consensus_1277#0      TTC-TATCCCAGGCAGCGAATGGAACGATCTAAAGCGAAGCGAACGGATTGCCGAATTCG 641
consensus_1277#1      TCAATACGCGAAACAACGATGGAAGCG--CAGAAGGAGCGCGAAG--------------- 558
                      *   **  * *  ** ***  * * **  *  ***    *****                

consensus_1277#0      CTCCACCAGCCGTCGAAACGGCCAGCCACGGCACGGTCCCGAAGTTGGACCACCAAAAGG 701
consensus_1277#1      ------------------------------------------------------------
                                                                                  

consensus_1277#0      CC 703
consensus_1277#1      --