cluster # 1300

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Anopheles gambiae
cluster # 1300 cluster # 1300 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1300#0 length = 472 sequences # 1

consensus_1300#1 length = 163 sequences # 1

consensusID : consensus_1300#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 472
fasta sequence

                              [CCGGAACGAGCTGTTCCAGTATCTGGCACACGTGTACGCAAACTCACACACTACGATGCACCTGGGACGGCCGTGCCCGAGTTTTCTGCGGGAAAACTTCCCCGACGGCATCACGAACGGGGCCGCCTGGTACAGCGTGACGGGCGGCATGCAGGACTGGTCGTACGTGGTTGGCGGTGCGTACGAGCTCACGCTCGAGGTCGGCTGCGACAAGTTCCCTCCCGCCGCGCAGCTGCCCGAGTTTTGGAAGCAAAACCGCGAGGCTTTGCTGCAGTACGTGGAGCAGGCGCAGCACGGCATCACCGGGTACGTGCGCAGCACGATCGGCCATCCGATTGCGCGGGCCAGCGTGCAGGTGAACCAGATCGAGCATGTGACCTACACGACGGCGAACGGCGATTTCTACCGGCTGCTACTGCCCGGCCTGTACAACGTTACGGCCGAGGCGGAGGGCTACGAACCGCAGACGCTG]

[+] EMBL BM657547             [CCGGAACGAGCTGTTCCAGTATCTGGCACACGTGTACGCAAACTCACACACTACGATGCACCTGGGACGGCCGTGCCCGAGTTTTCTGCGGGAAAACTTCCCCGACGGCATCACGAACGGGGCCGCCTGGTACAGCGTGACGGGCGGCATGCAGGACTGGTCGTACGTGGTTGGCGGTGCGTACGAGCTCACGCTCGAGGTCGGCTGCGACAAGTTCCCTCCCGCCGCGCAGCTGCCCGAGTTTTGGAAGCAAAACCGCGAGGCTTTGCTGCAGTACGTGGAGCAGGCGCAGCACGGCATCACCGGGTACGTGCGCAGCACGATCGGCCATCCGATTGCGCGGGCCAGCGTGCAGGTGAACCAGATCGAGCATGTGACCTACACGACGGCGAACGGCGATTTCTACCGGCTGCTACTGCCCGGCCTGTACAACGTTACGGCCGAGGCGGAGGGCTACGAACCGCAGACGCTG]




>consensus_1300#0
CCGGAACGAGCTGTTCCAGTATCTGGCACACGTGTACGCAAACTCACACACTACGATGCA
CCTGGGACGGCCGTGCCCGAGTTTTCTGCGGGAAAACTTCCCCGACGGCATCACGAACGG
GGCCGCCTGGTACAGCGTGACGGGCGGCATGCAGGACTGGTCGTACGTGGTTGGCGGTGC
GTACGAGCTCACGCTCGAGGTCGGCTGCGACAAGTTCCCTCCCGCCGCGCAGCTGCCCGA
GTTTTGGAAGCAAAACCGCGAGGCTTTGCTGCAGTACGTGGAGCAGGCGCAGCACGGCAT
CACCGGGTACGTGCGCAGCACGATCGGCCATCCGATTGCGCGGGCCAGCGTGCAGGTGAA
CCAGATCGAGCATGTGACCTACACGACGGCGAACGGCGATTTCTACCGGCTGCTACTGCC
CGGCCTGTACAACGTTACGGCCGAGGCGGAGGGCTACGAACCGCAGACGCTG

consensusID : consensus_1300#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 163
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGTATCTGGCACACGTGTACGCAAACTCACACACTACGATGCACCTGGGACGGCCGTGCCCGAGTTTTCTGCGGGAAAACTTCCCCGACGGCATCACGAACGGGGCCGCCTGGTACAGCGTGACGGGCGGCATGCAG]

[+] EMBL BM611596             [CCGCCCACGCGTCCGCCCACGCGTCCGGTATCTGGCACACGTGTACGCAAACTCACACACTACGATGCACCTGGGACGGCCGTGCCCGAGTTTTCTGCGGGAAAACTTCCCCGACGGCATCACGAACGGGGCCGCCTGGTACAGCGTGACGGGCGGCATGCAG]




>consensus_1300#1
CCGCCCACGCGTCCGCCCACGCGTCCGGTATCTGGCACACGTGTACGCAAACTCACACAC
TACGATGCACCTGGGACGGCCGTGCCCGAGTTTTCTGCGGGAAAACTTCCCCGACGGCAT
CACGAACGGGGCCGCCTGGTACAGCGTGACGGGCGGCATGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1300#0      ---------CCGGAACGAGCTGTTCCAGTATCTGGCACACGTGTACGCAAACTCACACAC 51
consensus_1300#1      CCGCCCACGCGTCCGCCCACGCGTCCGGTATCTGGCACACGTGTACGCAAACTCACACAC 60
                               *     *   *   *** *********************************

consensus_1300#0      TACGATGCACCTGGGACGGCCGTGCCCGAGTTTTCTGCGGGAAAACTTCCCCGACGGCAT 111
consensus_1300#1      TACGATGCACCTGGGACGGCCGTGCCCGAGTTTTCTGCGGGAAAACTTCCCCGACGGCAT 120
                      ************************************************************

consensus_1300#0      CACGAACGGGGCCGCCTGGTACAGCGTGACGGGCGGCATGCAGGACTGGTCGTACGTGGT 171
consensus_1300#1      CACGAACGGGGCCGCCTGGTACAGCGTGACGGGCGGCATGCAG----------------- 163
                      *******************************************                 

consensus_1300#0      TGGCGGTGCGTACGAGCTCACGCTCGAGGTCGGCTGCGACAAGTTCCCTCCCGCCGCGCA 231
consensus_1300#1      ------------------------------------------------------------
                                                                                  

consensus_1300#0      GCTGCCCGAGTTTTGGAAGCAAAACCGCGAGGCTTTGCTGCAGTACGTGGAGCAGGCGCA 291
consensus_1300#1      ------------------------------------------------------------
                                                                                  

consensus_1300#0      GCACGGCATCACCGGGTACGTGCGCAGCACGATCGGCCATCCGATTGCGCGGGCCAGCGT 351
consensus_1300#1      ------------------------------------------------------------
                                                                                  

consensus_1300#0      GCAGGTGAACCAGATCGAGCATGTGACCTACACGACGGCGAACGGCGATTTCTACCGGCT 411
consensus_1300#1      ------------------------------------------------------------
                                                                                  

consensus_1300#0      GCTACTGCCCGGCCTGTACAACGTTACGGCCGAGGCGGAGGGCTACGAACCGCAGACGCT 471
consensus_1300#1      ------------------------------------------------------------
                                                                                  

consensus_1300#0      G 472
consensus_1300#1      -