cluster # 1307

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Anopheles gambiae
cluster # 1307 cluster # 1307 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1307#0 length = 685 sequences # 1

consensus_1307#1 length = 434 sequences # 1

consensusID : consensus_1307#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence

                              [CCGGTCGTCACACCGATCAGTCATCTGCAGCACCACCGTGGACATCACCACCCTCACCAGCAGCAGCAGCAGCTGCTGCGGCTCCAGGGGGAATCGTTCAGTGTTACCCGATCGCGACTCGATCACCAGGCCAGCAGTGCAGGAACGGCGATCGTGCCGGTTCCGTCACATGCGACCATCTCGACCGCGACGCAAACAATCATTAGCTGGCCGCAGCCTTACGAGCAGATATTTTACGGCATCCTGCAGGAAGAGCTGCGCTTCAAGAACAGCATTTCCCAGATGCAGCACGAACAGCAGGTGCAGAAAAGTGGCCGACTAGATCCGTACGCGCTGCTGGACCAGTACATAGAAACGTGTGCGAAAACGCGCGCTACGCAGGCGGAGAATGGCAACCGGGCGAACCTGCCCGAATCGTACTATCAGGACCACATCCGGCTGTTGCATCTGCAGCTGCAGTACGAACGCCATCGGCGGGAGATACACGCCGAGCGCAACCGGCGGCTGCTGGGCAAGAGCCGCAAAATTCGCGCGCTGGAACAGAACAACGAAGCGCTGAAGGATCAGGTGGCCCGGTTGAACGCGGGAGATCGCCTCCCTGAATGCGGAGCTCAGTACGGTGCGCCGTAAAACGAACGCCGAGCCTTACGGAGGTGTCGCGAGAGTGTGTACGCTGGAAGGAAAC]

[+] EMBL BM618507             [CCGGTCGTCACACCGATCAGTCATCTGCAGCACCACCGTGGACATCACCACCCTCACCAGCAGCAGCAGCAGCTGCTGCGGCTCCAGGGGGAATCGTTCAGTGTTACCCGATCGCGACTCGATCACCAGGCCAGCAGTGCAGGAACGGCGATCGTGCCGGTTCCGTCACATGCGACCATCTCGACCGCGACGCAAACAATCATTAGCTGGCCGCAGCCTTACGAGCAGATATTTTACGGCATCCTGCAGGAAGAGCTGCGCTTCAAGAACAGCATTTCCCAGATGCAGCACGAACAGCAGGTGCAGAAAAGTGGCCGACTAGATCCGTACGCGCTGCTGGACCAGTACATAGAAACGTGTGCGAAAACGCGCGCTACGCAGGCGGAGAATGGCAACCGGGCGAACCTGCCCGAATCGTACTATCAGGACCACATCCGGCTGTTGCATCTGCAGCTGCAGTACGAACGCCATCGGCGGGAGATACACGCCGAGCGCAACCGGCGGCTGCTGGGCAAGAGCCGCAAAATTCGCGCGCTGGAACAGAACAACGAAGCGCTGAAGGATCAGGTGGCCCGGTTGAACGCGGGAGATCGCCTCCCTGAATGCGGAGCTCAGTACGGTGCGCCGTAAAACGAACGCCGAGCCTTACGGAGGTGTCGCGAGAGTGTGTACGCTGGAAGGAAAC]




>consensus_1307#0
CCGGTCGTCACACCGATCAGTCATCTGCAGCACCACCGTGGACATCACCACCCTCACCAG
CAGCAGCAGCAGCTGCTGCGGCTCCAGGGGGAATCGTTCAGTGTTACCCGATCGCGACTC
GATCACCAGGCCAGCAGTGCAGGAACGGCGATCGTGCCGGTTCCGTCACATGCGACCATC
TCGACCGCGACGCAAACAATCATTAGCTGGCCGCAGCCTTACGAGCAGATATTTTACGGC
ATCCTGCAGGAAGAGCTGCGCTTCAAGAACAGCATTTCCCAGATGCAGCACGAACAGCAG
GTGCAGAAAAGTGGCCGACTAGATCCGTACGCGCTGCTGGACCAGTACATAGAAACGTGT
GCGAAAACGCGCGCTACGCAGGCGGAGAATGGCAACCGGGCGAACCTGCCCGAATCGTAC
TATCAGGACCACATCCGGCTGTTGCATCTGCAGCTGCAGTACGAACGCCATCGGCGGGAG
ATACACGCCGAGCGCAACCGGCGGCTGCTGGGCAAGAGCCGCAAAATTCGCGCGCTGGAA
CAGAACAACGAAGCGCTGAAGGATCAGGTGGCCCGGTTGAACGCGGGAGATCGCCTCCCT
GAATGCGGAGCTCAGTACGGTGCGCCGTAAAACGAACGCCGAGCCTTACGGAGGTGTCGC
GAGAGTGTGTACGCTGGAAGGAAAC

consensusID : consensus_1307#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence

                              [CCGCCCACGCGTCCGGCTGCGCTTCAAGAACAGCATTTCCCAGATGCAGCACGAACAGCAGGTGCAGAAAAGTGGCCGACTCGATCCGTACGCGCTGCTCGACCAGTACATAGAAACGTGTGCGAAAACGCGCGCTACGCAGGCGGAGAATGGCAACCGGGCGAACCTGCCCGAATCGTACTATCAGGACCACATCCGGCTGTTGCATCTGCAGCTGCAGTACGAACGCCATCGGCGGGAGATACACGCCGAGCGCAACCGGCGGCTGCTGGGCAAGAGCCGCAAAATTCGCGCGCTGGAACAGAACAACGAAGCGCTGAAGGATCAGGTGGCCCGGTTGACGCGGGAGATCGCCTCCCTGAATGCGGAGCTCAGTACGGTGCGCCGTAAAACGAACGCCGAGCTTACGGAGGTGTCGCGAGAGTGTGTACGCT]

[+] EMBL BM611487             [CCGCCCACGCGTCCGGCTGCGCTTCAAGAACAGCATTTCCCAGATGCAGCACGAACAGCAGGTGCAGAAAAGTGGCCGACTCGATCCGTACGCGCTGCTCGACCAGTACATAGAAACGTGTGCGAAAACGCGCGCTACGCAGGCGGAGAATGGCAACCGGGCGAACCTGCCCGAATCGTACTATCAGGACCACATCCGGCTGTTGCATCTGCAGCTGCAGTACGAACGCCATCGGCGGGAGATACACGCCGAGCGCAACCGGCGGCTGCTGGGCAAGAGCCGCAAAATTCGCGCGCTGGAACAGAACAACGAAGCGCTGAAGGATCAGGTGGCCCGGTTGACGCGGGAGATCGCCTCCCTGAATGCGGAGCTCAGTACGGTGCGCCGTAAAACGAACGCCGAGCTTACGGAGGTGTCGCGAGAGTGTGTACGCT]




>consensus_1307#1
CCGCCCACGCGTCCGGCTGCGCTTCAAGAACAGCATTTCCCAGATGCAGCACGAACAGCA
GGTGCAGAAAAGTGGCCGACTCGATCCGTACGCGCTGCTCGACCAGTACATAGAAACGTG
TGCGAAAACGCGCGCTACGCAGGCGGAGAATGGCAACCGGGCGAACCTGCCCGAATCGTA
CTATCAGGACCACATCCGGCTGTTGCATCTGCAGCTGCAGTACGAACGCCATCGGCGGGA
GATACACGCCGAGCGCAACCGGCGGCTGCTGGGCAAGAGCCGCAAAATTCGCGCGCTGGA
ACAGAACAACGAAGCGCTGAAGGATCAGGTGGCCCGGTTGACGCGGGAGATCGCCTCCCT
GAATGCGGAGCTCAGTACGGTGCGCCGTAAAACGAACGCCGAGCTTACGGAGGTGTCGCG
AGAGTGTGTACGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1307#0      CCGGTCGTCACACCGATCAGTCATCTGCAGCACCACCGTGGACATCACCACCCTCACCAG 60
consensus_1307#1      ------------------------------------------------------------
                                                                                  

consensus_1307#0      CAGCAGCAGCAGCTGCTGCGGCTCCAGGGGGAATCGTTCAGTGTTACCCGATCGCGACTC 120
consensus_1307#1      ------------------------------------------------------------
                                                                                  

consensus_1307#0      GATCACCAGGCCAGCAGTGCAGGAACGGCGATCGTGCCGGTTCCGTCACATGCGACCATC 180
consensus_1307#1      ------------------------------------------------------------
                                                                                  

consensus_1307#0      TCGACCGCGACGCAAACAATCATTAGCTGGCCGCAGCCTTACGAGCAGATATTTTACGGC 240
consensus_1307#1      -----------------------------------------------------------C 1
                                                                                 *

consensus_1307#0      ATCCTGCAGGAAGAGCTGCGCTTCAAGAACAGCATTTCCCAGATGCAGCACGAACAGCAG 300
consensus_1307#1      CGCCCACGCGTCCGGCTGCGCTTCAAGAACAGCATTTCCCAGATGCAGCACGAACAGCAG 61
                        **  *  *    **********************************************

consensus_1307#0      GTGCAGAAAAGTGGCCGACTAGATCCGTACGCGCTGCTGGACCAGTACATAGAAACGTGT 360
consensus_1307#1      GTGCAGAAAAGTGGCCGACTCGATCCGTACGCGCTGCTCGACCAGTACATAGAAACGTGT 121
                      ******************** ***************** *********************

consensus_1307#0      GCGAAAACGCGCGCTACGCAGGCGGAGAATGGCAACCGGGCGAACCTGCCCGAATCGTAC 420
consensus_1307#1      GCGAAAACGCGCGCTACGCAGGCGGAGAATGGCAACCGGGCGAACCTGCCCGAATCGTAC 181
                      ************************************************************

consensus_1307#0      TATCAGGACCACATCCGGCTGTTGCATCTGCAGCTGCAGTACGAACGCCATCGGCGGGAG 480
consensus_1307#1      TATCAGGACCACATCCGGCTGTTGCATCTGCAGCTGCAGTACGAACGCCATCGGCGGGAG 241
                      ************************************************************

consensus_1307#0      ATACACGCCGAGCGCAACCGGCGGCTGCTGGGCAAGAGCCGCAAAATTCGCGCGCTGGAA 540
consensus_1307#1      ATACACGCCGAGCGCAACCGGCGGCTGCTGGGCAAGAGCCGCAAAATTCGCGCGCTGGAA 301
                      ************************************************************

consensus_1307#0      CAGAACAACGAAGCGCTGAAGGATCAGGTGGCCCGGTTGAACGCGGGAGATCGCCTCCCT 600
consensus_1307#1      CAGAACAACGAAGCGCTGAAGGATCAGGTGGCCCGGTTGA-CGCGGGAGATCGCCTCCCT 360
                      **************************************** *******************

consensus_1307#0      GAATGCGGAGCTCAGTACGGTGCGCCGTAAAACGAACGCCGAGCCTTACGGAGGTGTCGC 660
consensus_1307#1      GAATGCGGAGCTCAGTACGGTGCGCCGTAAAACGAACGCCGAGC-TTACGGAGGTGTCGC 419
                      ******************************************** ***************

consensus_1307#0      GAGAGTGTGTACGCTGGAAGGAAAC 685
consensus_1307#1      GAGAGTGTGTACGCT---------- 434
                      ***************