cluster # 1309

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Anopheles gambiae
cluster # 1309 cluster # 1309 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1309#0 length = 659 sequences # 1

consensus_1309#1 length = 535 sequences # 1

consensusID : consensus_1309#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 659
fasta sequence

                              [CTTACTGGATTGATTACGAAACTGCGTTGCTAGTTGCACTTCCTCTACGGCATATCGATACGGCATAGAGTGCTTTGGGGAAAGCCATGATTGCCACAACCCTCCGCCAGCTGGTGGGCCGCTCACTTTTCACCGTACAGCAACAGCTGGTAAGATTTCAGAGCGGTGTCGATGGGCCCGGTAGCGGCGTACCGAAACCCGGCGTCGCAAACCCGGACACCATATTCGACAAGATAATCAAGAAGCAGATACCGGCAGATGTAATTTACGAAGACGAGAAATGCATTGCGTTCAACGATGTTGCTCCTCAAGCGCCGGTTCATTTTCTTGTGATTCCAAAGAATAAAATTGATAAGCTTGAGAACAGTACGCCCAATCAAACGGAGATATTGGGGCATCTGTTGCATGTTGCCGGGCAGTTGGGGAAATCGAAAGCTCCCAAAGGATTCCGGCTGGTGATAAATAATGGTGACCATGGATGTCAAACAGTGTACCATATACACCTGCACGTTATAGGCGGACGCCAGCTCGGGTGGCCTCCCGGGTAATTGTATCGCGAACTGCACGTAACAGAAGCAAATAAATGGACCATCCTGCGGTTATCCATTTCCATCCTGAAAAAAAAAACAAAAAAAAGGCCACATGTGCTCGAGCTGCAG]

[+] EMBL CNS09297             [CTTACTGGATTGATTACGAAACTGCGTTGCTAGTTGCACTTCCTCTACGGCATATCGATACGGCATAGAGTGCTTTGGGGAAAGCCATGATTGCCACAACCCTCCGCCAGCTGGTGGGCCGCTCACTTTTCACCGTACAGCAACAGCTGGTAAGATTTCAGAGCGGTGTCGATGGGCCCGGTAGCGGCGTACCGAAACCCGGCGTCGCAAACCCGGACACCATATTCGACAAGATAATCAAGAAGCAGATACCGGCAGATGTAATTTACGAAGACGAGAAATGCATTGCGTTCAACGATGTTGCTCCTCAAGCGCCGGTTCATTTTCTTGTGATTCCAAAGAATAAAATTGATAAGCTTGAGAACAGTACGCCCAATCAAACGGAGATATTGGGGCATCTGTTGCATGTTGCCGGGCAGTTGGGGAAATCGAAAGCTCCCAAAGGATTCCGGCTGGTGATAAATAATGGTGACCATGGATGTCAAACAGTGTACCATATACACCTGCACGTTATAGGCGGACGCCAGCTCGGGTGGCCTCCCGGGTAATTGTATCGCGAACTGCACGTAACAGAAGCAAATAAATGGACCATCCTGCGGTTATCCATTTCCATCCTGAAAAAAAAAACAAAAAAAAGGCCACATGTGCTCGAGCTGCAG]




>consensus_1309#0
CTTACTGGATTGATTACGAAACTGCGTTGCTAGTTGCACTTCCTCTACGGCATATCGATA
CGGCATAGAGTGCTTTGGGGAAAGCCATGATTGCCACAACCCTCCGCCAGCTGGTGGGCC
GCTCACTTTTCACCGTACAGCAACAGCTGGTAAGATTTCAGAGCGGTGTCGATGGGCCCG
GTAGCGGCGTACCGAAACCCGGCGTCGCAAACCCGGACACCATATTCGACAAGATAATCA
AGAAGCAGATACCGGCAGATGTAATTTACGAAGACGAGAAATGCATTGCGTTCAACGATG
TTGCTCCTCAAGCGCCGGTTCATTTTCTTGTGATTCCAAAGAATAAAATTGATAAGCTTG
AGAACAGTACGCCCAATCAAACGGAGATATTGGGGCATCTGTTGCATGTTGCCGGGCAGT
TGGGGAAATCGAAAGCTCCCAAAGGATTCCGGCTGGTGATAAATAATGGTGACCATGGAT
GTCAAACAGTGTACCATATACACCTGCACGTTATAGGCGGACGCCAGCTCGGGTGGCCTC
CCGGGTAATTGTATCGCGAACTGCACGTAACAGAAGCAAATAAATGGACCATCCTGCGGT
TATCCATTTCCATCCTGAAAAAAAAAACAAAAAAAAGGCCACATGTGCTCGAGCTGCAG

consensusID : consensus_1309#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 535
fasta sequence

                              [AACTAAAAGCTGCGGAATTCCTCGAGCACTGTTGGCCTACTGGACAACCCTCCGCCAGCTGGTGGGCCGCTCACTTTTCACCGTACAGCAACAGCTGGTAAGATTTCAGAGCGGTGTCGATGGGCCCGGTAGCTGCGTACCGAAACCCGGCGTCGCAAACCCGGACACCATATTCGACAAGATAATCAAGAAGCAGATACCGGCAGATGTAATTTACGAAGACGAGAAATGCATTGCGTTCAACGATGTTGCTCCTCAAGCGCCGGTTCATTTTCTTGTGATTCCAAAGAATAAAATTGACAAGCTTGAAAACAGTACGCCCAATCAAACGGAGCTATTGGGGCATCTGTTGCATGTTGCGGGGCAGTTGGGGAAATCGAAAGCTCCCAAAGGATTCCGGCTGGTGATAAATAATGGTGACCATGGATGTCAAACAGTGTACCATATACACCTGCACGTTATAGGCGGACGCCAGCTCGGGTGGCCTCCCGGGTAATTGTATCGCGAACTGCACGTAACAGAAGCAAATAAATGA]

[-] EMBL CNS08SIR             [AACTAAAAGCTGCGGAATTCCTCGAGCACTGTTGGCCTACTGGACAACCCTCCGCCAGCTGGTGGGCCGCTCACTTTTCACCGTACAGCAACAGCTGGTAAGATTTCAGAGCGGTGTCGATGGGCCCGGTAGCTGCGTACCGAAACCCGGCGTCGCAAACCCGGACACCATATTCGACAAGATAATCAAGAAGCAGATACCGGCAGATGTAATTTACGAAGACGAGAAATGCATTGCGTTCAACGATGTTGCTCCTCAAGCGCCGGTTCATTTTCTTGTGATTCCAAAGAATAAAATTGACAAGCTTGAAAACAGTACGCCCAATCAAACGGAGCTATTGGGGCATCTGTTGCATGTTGCGGGGCAGTTGGGGAAATCGAAAGCTCCCAAAGGATTCCGGCTGGTGATAAATAATGGTGACCATGGATGTCAAACAGTGTACCATATACACCTGCACGTTATAGGCGGACGCCAGCTCGGGTGGCCTCCCGGGTAATTGTATCGCGAACTGCACGTAACAGAAGCAAATAAATGA]




>consensus_1309#1
AACTAAAAGCTGCGGAATTCCTCGAGCACTGTTGGCCTACTGGACAACCCTCCGCCAGCT
GGTGGGCCGCTCACTTTTCACCGTACAGCAACAGCTGGTAAGATTTCAGAGCGGTGTCGA
TGGGCCCGGTAGCTGCGTACCGAAACCCGGCGTCGCAAACCCGGACACCATATTCGACAA
GATAATCAAGAAGCAGATACCGGCAGATGTAATTTACGAAGACGAGAAATGCATTGCGTT
CAACGATGTTGCTCCTCAAGCGCCGGTTCATTTTCTTGTGATTCCAAAGAATAAAATTGA
CAAGCTTGAAAACAGTACGCCCAATCAAACGGAGCTATTGGGGCATCTGTTGCATGTTGC
GGGGCAGTTGGGGAAATCGAAAGCTCCCAAAGGATTCCGGCTGGTGATAAATAATGGTGA
CCATGGATGTCAAACAGTGTACCATATACACCTGCACGTTATAGGCGGACGCCAGCTCGG
GTGGCCTCCCGGGTAATTGTATCGCGAACTGCACGTAACAGAAGCAAATAAATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1309#0      CTTACTGGATTGATTACGAAACTGCGTTGCTAGTTGCACTTCCTCTACGGCATATCGATA 60
consensus_1309#1      -----------------------------------------------------AACTAAA 7
                                                                           * * * *

consensus_1309#0      CGGCATAGAGTGCTTTGGGGAAAGCCATGATTGCC--ACAACCCTCCGCCAGCTGGTGGG 118
consensus_1309#1      AGCTGCGGAATTCCTCGAGCACTGTTG-GCCTACTGGACAACCCTCCGCCAGCTGGTGGG 66
                       *     ** * * * * * *  *    *  * *   ***********************

consensus_1309#0      CCGCTCACTTTTCACCGTACAGCAACAGCTGGTAAGATTTCAGAGCGGTGTCGATGGGCC 178
consensus_1309#1      CCGCTCACTTTTCACCGTACAGCAACAGCTGGTAAGATTTCAGAGCGGTGTCGATGGGCC 126
                      ************************************************************

consensus_1309#0      CGGTAGCGGCGTACCGAAACCCGGCGTCGCAAACCCGGACACCATATTCGACAAGATAAT 238
consensus_1309#1      CGGTAGCTGCGTACCGAAACCCGGCGTCGCAAACCCGGACACCATATTCGACAAGATAAT 186
                      ******* ****************************************************

consensus_1309#0      CAAGAAGCAGATACCGGCAGATGTAATTTACGAAGACGAGAAATGCATTGCGTTCAACGA 298
consensus_1309#1      CAAGAAGCAGATACCGGCAGATGTAATTTACGAAGACGAGAAATGCATTGCGTTCAACGA 246
                      ************************************************************

consensus_1309#0      TGTTGCTCCTCAAGCGCCGGTTCATTTTCTTGTGATTCCAAAGAATAAAATTGATAAGCT 358
consensus_1309#1      TGTTGCTCCTCAAGCGCCGGTTCATTTTCTTGTGATTCCAAAGAATAAAATTGACAAGCT 306
                      ****************************************************** *****

consensus_1309#0      TGAGAACAGTACGCCCAATCAAACGGAGATATTGGGGCATCTGTTGCATGTTGCCGGGCA 418
consensus_1309#1      TGAAAACAGTACGCCCAATCAAACGGAGCTATTGGGGCATCTGTTGCATGTTGCGGGGCA 366
                      *** ************************ ************************* *****

consensus_1309#0      GTTGGGGAAATCGAAAGCTCCCAAAGGATTCCGGCTGGTGATAAATAATGGTGACCATGG 478
consensus_1309#1      GTTGGGGAAATCGAAAGCTCCCAAAGGATTCCGGCTGGTGATAAATAATGGTGACCATGG 426
                      ************************************************************

consensus_1309#0      ATGTCAAACAGTGTACCATATACACCTGCACGTTATAGGCGGACGCCAGCTCGGGTGGCC 538
consensus_1309#1      ATGTCAAACAGTGTACCATATACACCTGCACGTTATAGGCGGACGCCAGCTCGGGTGGCC 486
                      ************************************************************

consensus_1309#0      TCCCGGGTAATTGTATCGCGAACTGCACGTAACAGAAGCAAATAAATGGACCATCCTGCG 598
consensus_1309#1      TCCCGGGTAATTGTATCGCGAACTGCACGTAACAGAAGCAAATAAATGA----------- 535
                      ************************************************            

consensus_1309#0      GTTATCCATTTCCATCCTGAAAAAAAAAACAAAAAAAAGGCCACATGTGCTCGAGCTGCA 658
consensus_1309#1      ------------------------------------------------------------
                                                                                  

consensus_1309#0      G 659
consensus_1309#1      -