cluster # 1329

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Anopheles gambiae
cluster # 1329 cluster # 1329 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1329#0 length = 726 sequences # 1

consensus_1329#1 length = 309 sequences # 1

consensusID : consensus_1329#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 726
fasta sequence

                              [GCAGAATCGGCACGAGGNGAAAATACGGTCAGGAAATTAAAACAAAAAAAAGACATCTACACACTCTGGTACGTTACCGCAAAGTTTCGTGAAAAGTACACTATTTGTTGCTATTTTCTCGCTGCATGCAGAAGGCAAAGGTTTNCGTAAATCCGCTGCAATAACAGCACGAAAAACTTCTCGCAGCATCAACCAACTATTCAGCATCGTCTAACACTCACACACAAGCGATACGCACCGAATTCCCCCTCCGGTTGGGACACTCATATTTTGCTTCACTTTATCGACTTCCGCAGAGCTTTCGGACGAGTATTAACAATTAATAATTACATTTAAATAAGCGCGTCCGAAACCGGCACCGGCTACTGGCAGCGGGCACCGGCAACCTCTCCGACCCTGGTGCGTTTGCGTCCACTGTTTTCCCATTGTGTCGGAAGTGCTCTCTTCATCAAGCCTAAANAGTGTTATGCGCTTNTAGCTATTTTAGCGAGCCCGTGCCCACACGTGCCCAATATGCGTGATGTTTAATGTTAGGTGTCGGTGCTGTNATAGTNATNGTTTCATTGTTGAAGACGAGTATGTGCTTTGACTTTTAATTCCCTNCCCTNTTTGTACCCGGGTACTCGGTNTCTCTGACTTGGTAGGGAACATGTTTGTATACGCCTTACTTTNATAGCTGGCTTCGTGACCGGAAGCAACCCGTTTTATCAGGGGGCCATGCAAATT]

[+] EMBL BX468711             [GCAGAATCGGCACGAGGNGAAAATACGGTCAGGAAATTAAAACAAAAAAAAGACATCTACACACTCTGGTACGTTACCGCAAAGTTTCGTGAAAAGTACACTATTTGTTGCTATTTTCTCGCTGCATGCAGAAGGCAAAGGTTTNCGTAAATCCGCTGCAATAACAGCACGAAAAACTTCTCGCAGCATCAACCAACTATTCAGCATCGTCTAACACTCACACACAAGCGATACGCACCGAATTCCCCCTCCGGTTGGGACACTCATATTTTGCTTCACTTTATCGACTTCCGCAGAGCTTTCGGACGAGTATTAACAATTAATAATTACATTTAAATAAGCGCGTCCGAAACCGGCACCGGCTACTGGCAGCGGGCACCGGCAACCTCTCCGACCCTGGTGCGTTTGCGTCCACTGTTTTCCCATTGTGTCGGAAGTGCTCTCTTCATCAAGCCTAAANAGTGTTATGCGCTTNTAGCTATTTTAGCGAGCCCGTGCCCACACGTGCCCAATATGCGTGATGTTTAATGTTAGGTGTCGGTGCTGTNATAGTNATNGTTTCATTGTTGAAGACGAGTATGTGCTTTGACTTTTAATTCCCTNCCCTNTTTGTACCCGGGTACTCGGTNTCTCTGACTTGGTAGGGAACATGTTTGTATACGCCTTACTTTNATAGCTGGCTTCGTGACCGGAAGCAACCCGTTTTATCAGGGGGCCATGCAAATT]




>consensus_1329#0
GCAGAATCGGCACGAGGNGAAAATACGGTCAGGAAATTAAAACAAAAAAAAGACATCTAC
ACACTCTGGTACGTTACCGCAAAGTTTCGTGAAAAGTACACTATTTGTTGCTATTTTCTC
GCTGCATGCAGAAGGCAAAGGTTTNCGTAAATCCGCTGCAATAACAGCACGAAAAACTTC
TCGCAGCATCAACCAACTATTCAGCATCGTCTAACACTCACACACAAGCGATACGCACCG
AATTCCCCCTCCGGTTGGGACACTCATATTTTGCTTCACTTTATCGACTTCCGCAGAGCT
TTCGGACGAGTATTAACAATTAATAATTACATTTAAATAAGCGCGTCCGAAACCGGCACC
GGCTACTGGCAGCGGGCACCGGCAACCTCTCCGACCCTGGTGCGTTTGCGTCCACTGTTT
TCCCATTGTGTCGGAAGTGCTCTCTTCATCAAGCCTAAANAGTGTTATGCGCTTNTAGCT
ATTTTAGCGAGCCCGTGCCCACACGTGCCCAATATGCGTGATGTTTAATGTTAGGTGTCG
GTGCTGTNATAGTNATNGTTTCATTGTTGAAGACGAGTATGTGCTTTGACTTTTAATTCC
CTNCCCTNTTTGTACCCGGGTACTCGGTNTCTCTGACTTGGTAGGGAACATGTTTGTATA
CGCCTTACTTTNATAGCTGGCTTCGTGACCGGAAGCAACCCGTTTTATCAGGGGGCCATG
CAAATT

consensusID : consensus_1329#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 309
fasta sequence

                              [GCTTCACTTTATCGACTTCCGCAGAGCTTTCGGACGAGTATTAAAATTAATAATTAATTTAAATACGCGCGTCCGAAACCGGCACCGGCTACTGGCAGCGNGCACCGGCACCTCTCCGACCCTGGTGCGTTTGCGTCCACTGTTTTCCCATTGTGTCGGAAGTGCTCTCTTCATCAACCTAAAATGTTATGCGCTTTTGCTTTTAACGAGCCCGTGCCACACGTGCCCAATATGCGTGATGTTTAATGTTGGTGTCGGNGCTGTTTTGTTTTGTTTATTGTTTTTTTTTTTTGCTTTGCTNTTAATTCC]

[+] EMBL BX623321             [GCTTCACTTTATCGACTTCCGCAGAGCTTTCGGACGAGTATTAAAATTAATAATTAATTTAAATACGCGCGTCCGAAACCGGCACCGGCTACTGGCAGCGNGCACCGGCACCTCTCCGACCCTGGTGCGTTTGCGTCCACTGTTTTCCCATTGTGTCGGAAGTGCTCTCTTCATCAACCTAAAATGTTATGCGCTTTTGCTTTTAACGAGCCCGTGCCACACGTGCCCAATATGCGTGATGTTTAATGTTGGTGTCGGNGCTGTTTTGTTTTGTTTATTGTTTTTTTTTTTTGCTTTGCTNTTAATTCC]




>consensus_1329#1
GCTTCACTTTATCGACTTCCGCAGAGCTTTCGGACGAGTATTAAAATTAATAATTAATTT
AAATACGCGCGTCCGAAACCGGCACCGGCTACTGGCAGCGNGCACCGGCACCTCTCCGAC
CCTGGTGCGTTTGCGTCCACTGTTTTCCCATTGTGTCGGAAGTGCTCTCTTCATCAACCT
AAAATGTTATGCGCTTTTGCTTTTAACGAGCCCGTGCCACACGTGCCCAATATGCGTGAT
GTTTAATGTTGGTGTCGGNGCTGTTTTGTTTTGTTTATTGTTTTTTTTTTTTGCTTTGCT
NTTAATTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1329#0      GCAGAATCGGCACGAGGNGAAAATACGGTCAGGAAATTAAAACAAAAAAAAGACATCTAC 60
consensus_1329#1      ------------------------------------------------------------
                                                                                  

consensus_1329#0      ACACTCTGGTACGTTACCGCAAAGTTTCGTGAAAAGTACACTATTTGTTGCTATTTTCTC 120
consensus_1329#1      ------------------------------------------------------------
                                                                                  

consensus_1329#0      GCTGCATGCAGAAGGCAAAGGTTTNCGTAAATCCGCTGCAATAACAGCACGAAAAACTTC 180
consensus_1329#1      ------------------------------------------------------------
                                                                                  

consensus_1329#0      TCGCAGCATCAACCAACTATTCAGCATCGTCTAACACTCACACACAAGCGATACGCACCG 240
consensus_1329#1      ------------------------------------------------------------
                                                                                  

consensus_1329#0      AATTCCCCCTCCGGTTGGGACACTCATATTTTGCTTCACTTTATCGACTTCCGCAGAGCT 300
consensus_1329#1      --------------------------------GCTTCACTTTATCGACTTCCGCAGAGCT 28
                                                      ****************************

consensus_1329#0      TTCGGACGAGTATTAACAATTAATAATTACATTTAAATAAGCGCGTCCGAAACCGGCACC 360
consensus_1329#1      TTCGGACGAGTATTAA-AATTAATAATTA-ATTTAAATACGCGCGTCCGAAACCGGCACC 86
                      **************** ************ ********* ********************

consensus_1329#0      GGCTACTGGCAGCGGGCACCGGCAACCTCTCCGACCCTGGTGCGTTTGCGTCCACTGTTT 420
consensus_1329#1      GGCTACTGGCAGCGNGCACCGGCA-CCTCTCCGACCCTGGTGCGTTTGCGTCCACTGTTT 145
                      ************** ********* ***********************************

consensus_1329#0      TCCCATTGTGTCGGAAGTGCTCTCTTCATCAAGCCTAAANAGTGTTATGCGCTTNTAGCT 480
consensus_1329#1      TCCCATTGTGTCGGAAGTGCTCTCTTCATCAA-CCTAAAA--TGTTATGCGCTTTTG--- 199
                      ******************************** ******   ************ *    

consensus_1329#0      ATTTTAGCGAGCCCGTGCCCACACGTGCCCAATATGCGTGATGTTTAATGTTAGGTGTCG 540
consensus_1329#1      CTTTTAACGAGCCCGTGCC-ACACGTGCCCAATATGCGTGATGTTTAATGTT-GGTGTCG 257
                       ***** ************ ******************************** *******

consensus_1329#0      GTGCTGTNATAGTNATNGTTTCATTGTTGAAGACGAGTATGTGCTTTGACTTTTAATTCC 600
consensus_1329#1      GNGCTGTTTTGTT--TTGTTT-ATTGTTT----TTTTTTTTTGCTTTG-CTNTTAATTCC 309
                      * *****  *  *  * **** ******         * * ******* ** ********

consensus_1329#0      CTNCCCTNTTTGTACCCGGGTACTCGGTNTCTCTGACTTGGTAGGGAACATGTTTGTATA 660
consensus_1329#1      ------------------------------------------------------------
                                                                                  

consensus_1329#0      CGCCTTACTTTNATAGCTGGCTTCGTGACCGGAAGCAACCCGTTTTATCAGGGGGCCATG 720
consensus_1329#1      ------------------------------------------------------------
                                                                                  

consensus_1329#0      CAAATT 726
consensus_1329#1      ------