cluster # 1367

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Anopheles gambiae
cluster # 1367 cluster # 1367 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1367#0 length = 684 sequences # 1

consensus_1367#1 length = 653 sequences # 1

consensusID : consensus_1367#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence

                              [CCGCCCACGCGTCCGGTAAAATGTGGCTGTACAACTGTGCTGCAATAAAGCGGACTGTAGGTAGCTTACATTGATCTTAGTAGCGCATGAGTTTTTACTGACATGGCACACAAGCAGCCGTGGATAGAACCTTCTGAACCTGAACAGAACAAAATATGTCCTACAGTCAAGAAGCGGGAGACAAGAAGATTGAATCGTTCGACTACGAGTATTCAGAACAGAGAAATTTTGAAGTTAAATTTGCAGTGGAAAACACACACACTTCCAGGTTTGTTGAAAACGTTAAAAGAATGGCAAACACCCAACCGACCAATGCATCGAAAATCCCTCCGCCTGGATTTAGTCGAAAACAGCTTACTCCTTTCTACGAGAAAACAAAGCTACTGCGCACCGTTTTAGAAAGGCAAGTTACGCGAAAACTGGACCATTCTAGTGAACCTTGGTCCGCGAAAGTCGGTGACCATTCGCGTATCCCAAAGCCACCTCCAACATCACACAGACAGCTTAACTTTTCCATTATGGATGAATCGAGAGTACCTTCGTTGCAGGAACGTTCAGATCCGTCGTTGGGAATATTGCAACCAGAGGAAATGGATTTGGGCAGCTTTCGCGTCAGCATCGATGATAGCGGTCGGCACAATTCATCTAACCTTTCCGATGGCATTCTACGCGACAGTCAAATGA]

[+] EMBL BM654783             [CCGCCCACGCGTCCGGTAAAATGTGGCTGTACAACTGTGCTGCAATAAAGCGGACTGTAGGTAGCTTACATTGATCTTAGTAGCGCATGAGTTTTTACTGACATGGCACACAAGCAGCCGTGGATAGAACCTTCTGAACCTGAACAGAACAAAATATGTCCTACAGTCAAGAAGCGGGAGACAAGAAGATTGAATCGTTCGACTACGAGTATTCAGAACAGAGAAATTTTGAAGTTAAATTTGCAGTGGAAAACACACACACTTCCAGGTTTGTTGAAAACGTTAAAAGAATGGCAAACACCCAACCGACCAATGCATCGAAAATCCCTCCGCCTGGATTTAGTCGAAAACAGCTTACTCCTTTCTACGAGAAAACAAAGCTACTGCGCACCGTTTTAGAAAGGCAAGTTACGCGAAAACTGGACCATTCTAGTGAACCTTGGTCCGCGAAAGTCGGTGACCATTCGCGTATCCCAAAGCCACCTCCAACATCACACAGACAGCTTAACTTTTCCATTATGGATGAATCGAGAGTACCTTCGTTGCAGGAACGTTCAGATCCGTCGTTGGGAATATTGCAACCAGAGGAAATGGATTTGGGCAGCTTTCGCGTCAGCATCGATGATAGCGGTCGGCACAATTCATCTAACCTTTCCGATGGCATTCTACGCGACAGTCAAATGA]




>consensus_1367#0
CCGCCCACGCGTCCGGTAAAATGTGGCTGTACAACTGTGCTGCAATAAAGCGGACTGTAG
GTAGCTTACATTGATCTTAGTAGCGCATGAGTTTTTACTGACATGGCACACAAGCAGCCG
TGGATAGAACCTTCTGAACCTGAACAGAACAAAATATGTCCTACAGTCAAGAAGCGGGAG
ACAAGAAGATTGAATCGTTCGACTACGAGTATTCAGAACAGAGAAATTTTGAAGTTAAAT
TTGCAGTGGAAAACACACACACTTCCAGGTTTGTTGAAAACGTTAAAAGAATGGCAAACA
CCCAACCGACCAATGCATCGAAAATCCCTCCGCCTGGATTTAGTCGAAAACAGCTTACTC
CTTTCTACGAGAAAACAAAGCTACTGCGCACCGTTTTAGAAAGGCAAGTTACGCGAAAAC
TGGACCATTCTAGTGAACCTTGGTCCGCGAAAGTCGGTGACCATTCGCGTATCCCAAAGC
CACCTCCAACATCACACAGACAGCTTAACTTTTCCATTATGGATGAATCGAGAGTACCTT
CGTTGCAGGAACGTTCAGATCCGTCGTTGGGAATATTGCAACCAGAGGAAATGGATTTGG
GCAGCTTTCGCGTCAGCATCGATGATAGCGGTCGGCACAATTCATCTAACCTTTCCGATG
GCATTCTACGCGACAGTCAAATGA

consensusID : consensus_1367#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 653
fasta sequence

                              [CCGCGGACGCGTGGGGGACTGTAGGTAGCTTACATTGATCTTAGTAGCGCATGAGTTTTTACTGACATGGCACACAAGCAGCCGTGGATAGAACCTTCTGAACCTGAACAGAACAAAATATGTCCTACAGTCAAGAAGCGGGAGACAAGAAGATTGAATCGTTCGACTACGAGTATTCGGAACAGAGAAATTTTGAAGTTAAATTTGCAGTGGAAAACACACACACTTCCAGGTTTGTTGATCAGCACGTTGAAAGAATGGCAAACACCCAACCGACCAATGCATCGAAAATCCCTCCGCCTGGATTTAGTCGAAAACAGCTTACTCCTTTCTACGAGAAAACAAAGCTACTGCGCACCGTTTTAGAAAGGCAAGTTACGCGAAAACTGGACCATTCTAGTGAACCCTGGTCCGCGAAAGTCGGTGACCATTCTCGTATCCCAAAGCCACCTCAAACAGCACACAGACAGCTTAACTTTTCCATTATGGATGAATCGAGAGTACCTTCGTTGCAGGAACGTTCAGATCCGTCGTTGGGAATATTGCAACCAGAGGAAATGGATTTGGGCAGCTTTCGCGTCAGCATCGATGATAGCGGTCGGTACAATTCATCTAACCTTTCCGATGGCATTCTACGCGACAGTCAAATGATT]

[+] EMBL BM593542             [CCGCGGACGCGTGGGGGACTGTAGGTAGCTTACATTGATCTTAGTAGCGCATGAGTTTTTACTGACATGGCACACAAGCAGCCGTGGATAGAACCTTCTGAACCTGAACAGAACAAAATATGTCCTACAGTCAAGAAGCGGGAGACAAGAAGATTGAATCGTTCGACTACGAGTATTCGGAACAGAGAAATTTTGAAGTTAAATTTGCAGTGGAAAACACACACACTTCCAGGTTTGTTGATCAGCACGTTGAAAGAATGGCAAACACCCAACCGACCAATGCATCGAAAATCCCTCCGCCTGGATTTAGTCGAAAACAGCTTACTCCTTTCTACGAGAAAACAAAGCTACTGCGCACCGTTTTAGAAAGGCAAGTTACGCGAAAACTGGACCATTCTAGTGAACCCTGGTCCGCGAAAGTCGGTGACCATTCTCGTATCCCAAAGCCACCTCAAACAGCACACAGACAGCTTAACTTTTCCATTATGGATGAATCGAGAGTACCTTCGTTGCAGGAACGTTCAGATCCGTCGTTGGGAATATTGCAACCAGAGGAAATGGATTTGGGCAGCTTTCGCGTCAGCATCGATGATAGCGGTCGGTACAATTCATCTAACCTTTCCGATGGCATTCTACGCGACAGTCAAATGATT]




>consensus_1367#1
CCGCGGACGCGTGGGGGACTGTAGGTAGCTTACATTGATCTTAGTAGCGCATGAGTTTTT
ACTGACATGGCACACAAGCAGCCGTGGATAGAACCTTCTGAACCTGAACAGAACAAAATA
TGTCCTACAGTCAAGAAGCGGGAGACAAGAAGATTGAATCGTTCGACTACGAGTATTCGG
AACAGAGAAATTTTGAAGTTAAATTTGCAGTGGAAAACACACACACTTCCAGGTTTGTTG
ATCAGCACGTTGAAAGAATGGCAAACACCCAACCGACCAATGCATCGAAAATCCCTCCGC
CTGGATTTAGTCGAAAACAGCTTACTCCTTTCTACGAGAAAACAAAGCTACTGCGCACCG
TTTTAGAAAGGCAAGTTACGCGAAAACTGGACCATTCTAGTGAACCCTGGTCCGCGAAAG
TCGGTGACCATTCTCGTATCCCAAAGCCACCTCAAACAGCACACAGACAGCTTAACTTTT
CCATTATGGATGAATCGAGAGTACCTTCGTTGCAGGAACGTTCAGATCCGTCGTTGGGAA
TATTGCAACCAGAGGAAATGGATTTGGGCAGCTTTCGCGTCAGCATCGATGATAGCGGTC
GGTACAATTCATCTAACCTTTCCGATGGCATTCTACGCGACAGTCAAATGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1367#0      CCGCCCACGCGTCCGGTAAAATGTGGCTGTACAACTGTGCTGCAATAAAGCGGACTGTAG 60
consensus_1367#1      ------------------------------------CCGCGGACGCGTGGGGGACTGTAG 24
                                                            ** *       * *********

consensus_1367#0      GTAGCTTACATTGATCTTAGTAGCGCATGAGTTTTTACTGACATGGCACACAAGCAGCCG 120
consensus_1367#1      GTAGCTTACATTGATCTTAGTAGCGCATGAGTTTTTACTGACATGGCACACAAGCAGCCG 84
                      ************************************************************

consensus_1367#0      TGGATAGAACCTTCTGAACCTGAACAGAACAAAATATGTCCTACAGTCAAGAAGCGGGAG 180
consensus_1367#1      TGGATAGAACCTTCTGAACCTGAACAGAACAAAATATGTCCTACAGTCAAGAAGCGGGAG 144
                      ************************************************************

consensus_1367#0      ACAAGAAGATTGAATCGTTCGACTACGAGTATTCAGAACAGAGAAATTTTGAAGTTAAAT 240
consensus_1367#1      ACAAGAAGATTGAATCGTTCGACTACGAGTATTCGGAACAGAGAAATTTTGAAGTTAAAT 204
                      ********************************** *************************

consensus_1367#0      TTGCAGTGGAAAACACACACACTTCCAGGTTTGTTGA---AAACGTTAAAAGAATGGCAA 297
consensus_1367#1      TTGCAGTGGAAAACACACACACTTCCAGGTTTGTTGATCAGCACGTTGAAAGAATGGCAA 264
                      *************************************     ***** ************

consensus_1367#0      ACACCCAACCGACCAATGCATCGAAAATCCCTCCGCCTGGATTTAGTCGAAAACAGCTTA 357
consensus_1367#1      ACACCCAACCGACCAATGCATCGAAAATCCCTCCGCCTGGATTTAGTCGAAAACAGCTTA 324
                      ************************************************************

consensus_1367#0      CTCCTTTCTACGAGAAAACAAAGCTACTGCGCACCGTTTTAGAAAGGCAAGTTACGCGAA 417
consensus_1367#1      CTCCTTTCTACGAGAAAACAAAGCTACTGCGCACCGTTTTAGAAAGGCAAGTTACGCGAA 384
                      ************************************************************

consensus_1367#0      AACTGGACCATTCTAGTGAACCTTGGTCCGCGAAAGTCGGTGACCATTCGCGTATCCCAA 477
consensus_1367#1      AACTGGACCATTCTAGTGAACCCTGGTCCGCGAAAGTCGGTGACCATTCTCGTATCCCAA 444
                      ********************** ************************** **********

consensus_1367#0      AGCCACCTCCAACATCACACAGACAGCTTAACTTTTCCATTATGGATGAATCGAGAGTAC 537
consensus_1367#1      AGCCACCTCAAACAGCACACAGACAGCTTAACTTTTCCATTATGGATGAATCGAGAGTAC 504
                      ********* **** *********************************************

consensus_1367#0      CTTCGTTGCAGGAACGTTCAGATCCGTCGTTGGGAATATTGCAACCAGAGGAAATGGATT 597
consensus_1367#1      CTTCGTTGCAGGAACGTTCAGATCCGTCGTTGGGAATATTGCAACCAGAGGAAATGGATT 564
                      ************************************************************

consensus_1367#0      TGGGCAGCTTTCGCGTCAGCATCGATGATAGCGGTCGGCACAATTCATCTAACCTTTCCG 657
consensus_1367#1      TGGGCAGCTTTCGCGTCAGCATCGATGATAGCGGTCGGTACAATTCATCTAACCTTTCCG 624
                      ************************************** *********************

consensus_1367#0      ATGGCATTCTACGCGACAGTCAAATGA-- 684
consensus_1367#1      ATGGCATTCTACGCGACAGTCAAATGATT 653
                      ***************************