cluster # 1368

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Anopheles gambiae
cluster # 1368 cluster # 1368 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1368#0 length = 512 sequences # 1

consensus_1368#1 length = 332 sequences # 1

consensusID : consensus_1368#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 512
fasta sequence

                              [CCGCTGTGTCCAACAGCAGCAGAAGGCAGAAGGTTTTTTGTTCGTGTAAAGTGTGTAAAAGTCAGGCGTGCCCGTGGCAAAAGCTGTACCAGTACCTGCGAACGGGACACAGCAGCACAGCCCAAACTCACGGGCACCAAACGTTACGTCCGCGTGTGTGTTTGTTGCGTGCAGAAGTGGTGACCCTCGTACACTGCCAGCGACAGTGGTGGTGGGCAAGCAAAAAAAAAACCGTCAGTGGAAGAATTTTTCCTCGCGAGTGGGTGCAAAACCCCCTTCGTGCAAACAAAGCAACAAAAGTGTTCGGTACGCGTAAGCGCGTGCCTGTGTGCCGATAAGATGCTGTGCGTGTGATGGGTGTGTTTGTTTAGTTTTGTTTTTTTTTTGGTTTCGGGCAGCAAGATCGTGCCGTGAAGTGTGTGAAAGCCGCGACAGCCTCCTTTGCCGTGAAAATCGGCACTTCACGGAGCATTGTCCACACACACCAGGCAAAGGTGTGCATCCAGTGTGTG]

[+] EMBL BM636825             [CCGCTGTGTCCAACAGCAGCAGAAGGCAGAAGGTTTTTTGTTCGTGTAAAGTGTGTAAAAGTCAGGCGTGCCCGTGGCAAAAGCTGTACCAGTACCTGCGAACGGGACACAGCAGCACAGCCCAAACTCACGGGCACCAAACGTTACGTCCGCGTGTGTGTTTGTTGCGTGCAGAAGTGGTGACCCTCGTACACTGCCAGCGACAGTGGTGGTGGGCAAGCAAAAAAAAAACCGTCAGTGGAAGAATTTTTCCTCGCGAGTGGGTGCAAAACCCCCTTCGTGCAAACAAAGCAACAAAAGTGTTCGGTACGCGTAAGCGCGTGCCTGTGTGCCGATAAGATGCTGTGCGTGTGATGGGTGTGTTTGTTTAGTTTTGTTTTTTTTTTGGTTTCGGGCAGCAAGATCGTGCCGTGAAGTGTGTGAAAGCCGCGACAGCCTCCTTTGCCGTGAAAATCGGCACTTCACGGAGCATTGTCCACACACACCAGGCAAAGGTGTGCATCCAGTGTGTG]




>consensus_1368#0
CCGCTGTGTCCAACAGCAGCAGAAGGCAGAAGGTTTTTTGTTCGTGTAAAGTGTGTAAAA
GTCAGGCGTGCCCGTGGCAAAAGCTGTACCAGTACCTGCGAACGGGACACAGCAGCACAG
CCCAAACTCACGGGCACCAAACGTTACGTCCGCGTGTGTGTTTGTTGCGTGCAGAAGTGG
TGACCCTCGTACACTGCCAGCGACAGTGGTGGTGGGCAAGCAAAAAAAAAACCGTCAGTG
GAAGAATTTTTCCTCGCGAGTGGGTGCAAAACCCCCTTCGTGCAAACAAAGCAACAAAAG
TGTTCGGTACGCGTAAGCGCGTGCCTGTGTGCCGATAAGATGCTGTGCGTGTGATGGGTG
TGTTTGTTTAGTTTTGTTTTTTTTTTGGTTTCGGGCAGCAAGATCGTGCCGTGAAGTGTG
TGAAAGCCGCGACAGCCTCCTTTGCCGTGAAAATCGGCACTTCACGGAGCATTGTCCACA
CACACCAGGCAAAGGTGTGCATCCAGTGTGTG

consensusID : consensus_1368#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 332
fasta sequence

                              [TTTTTTTTTTGTGTAAAGTGTGTAAAAGTCAGGCGTGCCCGTGGCAAAAGCTGTACCAGTACCTGCGAACGGGACACAGCAGCACAGCCCAAACTCACGGGCACCAAACGTTACGTCCGCGTGTGTGTTTGTTGCGTGCAGAAGTGGTGACCCTCGTACACTGCCAGCGACAGTGGTGGTGGGCAAGCAAAAAAAAAACCGTCAGTGGAAGAATTTTTCCTCGCGAGCGGCGGAGTGGGACCGATGATGGGCGGCGGAGACTATCGGGACAATCGCAGTATGCCGCTGTCGCCCCCGATTGACGATATGGCGCCGCAAAGCATTTCCTTCAT]

[+] EMBL AGA285383            [TTTTTTTTTTGTGTAAAGTGTGTAAAAGTCAGGCGTGCCCGTGGCAAAAGCTGTACCAGTACCTGCGAACGGGACACAGCAGCACAGCCCAAACTCACGGGCACCAAACGTTACGTCCGCGTGTGTGTTTGTTGCGTGCAGAAGTGGTGACCCTCGTACACTGCCAGCGACAGTGGTGGTGGGCAAGCAAAAAAAAAACCGTCAGTGGAAGAATTTTTCCTCGCGAGCGGCGGAGTGGGACCGATGATGGGCGGCGGAGACTATCGGGACAATCGCAGTATGCCGCTGTCGCCCCCGATTGACGATATGGCGCCGCAAAGCATTTCCTTCAT]




>consensus_1368#1
TTTTTTTTTTGTGTAAAGTGTGTAAAAGTCAGGCGTGCCCGTGGCAAAAGCTGTACCAGT
ACCTGCGAACGGGACACAGCAGCACAGCCCAAACTCACGGGCACCAAACGTTACGTCCGC
GTGTGTGTTTGTTGCGTGCAGAAGTGGTGACCCTCGTACACTGCCAGCGACAGTGGTGGT
GGGCAAGCAAAAAAAAAACCGTCAGTGGAAGAATTTTTCCTCGCGAGCGGCGGAGTGGGA
CCGATGATGGGCGGCGGAGACTATCGGGACAATCGCAGTATGCCGCTGTCGCCCCCGATT
GACGATATGGCGCCGCAAAGCATTTCCTTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1368#0      CCGCTGTGTCCAACAGCAGCAGAAGGCAGAAGGTTTTTTGTTCGTGTAAAGTGTGTAAAA 60
consensus_1368#1      ---------------------------------TTTTTTTTTTGTGTAAAGTGTGTAAAA 27
                                                       ****** ** *****************

consensus_1368#0      GTCAGGCGTGCCCGTGGCAAAAGCTGTACCAGTACCTGCGAACGGGACACAGCAGCACAG 120
consensus_1368#1      GTCAGGCGTGCCCGTGGCAAAAGCTGTACCAGTACCTGCGAACGGGACACAGCAGCACAG 87
                      ************************************************************

consensus_1368#0      CCCAAACTCACGGGCACCAAACGTTACGTCCGCGTGTGTGTTTGTTGCGTGCAGAAGTGG 180
consensus_1368#1      CCCAAACTCACGGGCACCAAACGTTACGTCCGCGTGTGTGTTTGTTGCGTGCAGAAGTGG 147
                      ************************************************************

consensus_1368#0      TGACCCTCGTACACTGCCAGCGACAGTGGTGGTGGGCAAGCAAAAAAAAAACCGTCAGTG 240
consensus_1368#1      TGACCCTCGTACACTGCCAGCGACAGTGGTGGTGGGCAAGCAAAAAAAAAACCGTCAGTG 207
                      ************************************************************

consensus_1368#0      GAAGAATTTTTCCTCGCGAGTGG--GTGCAAAACCCCCTTCGTGCAAACAAAGCAACAAA 298
consensus_1368#1      GAAGAATTTTTCCTCGCGAGCGGCGGAGTGGGACCGATGATGGGCGGCGGAGACTATCGG 267
                      ******************** **  * *    ***      * **     *  * *    

consensus_1368#0      AGTGTTCGGTACGCGTAAGCG-CGTGCCTGTGTGCCGATAAGATGCTGTGCGTGTGATGG 357
consensus_1368#1      GACAATCGCAGTATGCCGCTGTCGCCCCCGATTGACGATATGGCGCCGCA-AAGCATTTC 326
                           ***      *     * **  ** *  ** ***** *  ** *     *   *  

consensus_1368#0      GTGTGTTTGTTTAGTTTTGTTTTTTTTTTGGTTTCGGGCAGCAAGATCGTGCCGTGAAGT 417
consensus_1368#1      CTTCAT------------------------------------------------------ 332
                       *   *                                                      

consensus_1368#0      GTGTGAAAGCCGCGACAGCCTCCTTTGCCGTGAAAATCGGCACTTCACGGAGCATTGTCC 477
consensus_1368#1      ------------------------------------------------------------
                                                                                  

consensus_1368#0      ACACACACCAGGCAAAGGTGTGCATCCAGTGTGTG 512
consensus_1368#1      -----------------------------------