cluster # 1377

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Anopheles gambiae
cluster # 1377 cluster # 1377 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1377#0 length = 473 sequences # 1

consensus_1377#1 length = 448 sequences # 1

consensusID : consensus_1377#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 473
fasta sequence

                              [AAGCGGAGACGATAAAAAAGACGAGAAGATTTTTTCATTTTATTCCACGGGTGTATTAAAGATAGTGAGTGTGTGCACAAAGCAGGAAGGAAAACAGGAAGCAAACAAACACAACAAAATGTATGCATTGTGAGATCTTGATAGTGTGAATTAAGGAAATTAGAAAACAAACAGAACAAACAGAACAAAACACTCGATAAATCTTTCAGCACGAGTGTGTAGAAGAAAGCAACGAAATCAACTAACGACAAGAAAGCTCCACACGGGTGAAAAATGCTGCCAAAGAAAACTCTGCACGAGAGCAAATGAAAGGAGCAATTTCAGTGGATCGTTTTGTGATCGTACGAAAACCAATCGAAAAGGGCAGAAAAGTCTATAAACATGCGTAGAATATTTTGAAAAGTATCTGAGATAGATTCAGGTAAAGGAGAAAAAGAGATACAGAAAGAGATACATATAGCAAAATGTAATAC]

[+] EMBL AGA285483            [AAGCGGAGACGATAAAAAAGACGAGAAGATTTTTTCATTTTATTCCACGGGTGTATTAAAGATAGTGAGTGTGTGCACAAAGCAGGAAGGAAAACAGGAAGCAAACAAACACAACAAAATGTATGCATTGTGAGATCTTGATAGTGTGAATTAAGGAAATTAGAAAACAAACAGAACAAACAGAACAAAACACTCGATAAATCTTTCAGCACGAGTGTGTAGAAGAAAGCAACGAAATCAACTAACGACAAGAAAGCTCCACACGGGTGAAAAATGCTGCCAAAGAAAACTCTGCACGAGAGCAAATGAAAGGAGCAATTTCAGTGGATCGTTTTGTGATCGTACGAAAACCAATCGAAAAGGGCAGAAAAGTCTATAAACATGCGTAGAATATTTTGAAAAGTATCTGAGATAGATTCAGGTAAAGGAGAAAAAGAGATACAGAAAGAGATACATATAGCAAAATGTAATAC]




>consensus_1377#0
AAGCGGAGACGATAAAAAAGACGAGAAGATTTTTTCATTTTATTCCACGGGTGTATTAAA
GATAGTGAGTGTGTGCACAAAGCAGGAAGGAAAACAGGAAGCAAACAAACACAACAAAAT
GTATGCATTGTGAGATCTTGATAGTGTGAATTAAGGAAATTAGAAAACAAACAGAACAAA
CAGAACAAAACACTCGATAAATCTTTCAGCACGAGTGTGTAGAAGAAAGCAACGAAATCA
ACTAACGACAAGAAAGCTCCACACGGGTGAAAAATGCTGCCAAAGAAAACTCTGCACGAG
AGCAAATGAAAGGAGCAATTTCAGTGGATCGTTTTGTGATCGTACGAAAACCAATCGAAA
AGGGCAGAAAAGTCTATAAACATGCGTAGAATATTTTGAAAAGTATCTGAGATAGATTCA
GGTAAAGGAGAAAAAGAGATACAGAAAGAGATACATATAGCAAAATGTAATAC

consensusID : consensus_1377#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 448
fasta sequence

                              [CCGCGGATGGATCCAAGCACGATGCTTACCATATTTCAAACCATTGCTAGATGAATAGTTCTACCCATTTTAAAGCCCATACGAGGGGGGAGACGAGAAGATTTTTTCATTTTATTCCAAGGGTGTATTAAAGATATTGAGTGTGTGCACAAAGCAGGAAGGAAAACAGGAAGCAAACAAACACAACAAAATGTATGCATTGTGAGATCTTGATAGTGTGAATTAAGGAAATTATAAAACAAACTGAACAAACAGAACAAAACACTCGATAAATCTTTCAGCACGAGTGTGTACAAGAAAGCGACGAAATCAACTAACGACTAGAAAGCTCCACACGGGTGAAAAATGCTGCCAAAGAAAACTCTGCACGATATAACACGTTTTCCACTCGAACGGGGAAAAGTGCGATAAGAGATGACATGCTTAAACACACAAATAGAATTGGAAA]

[+] EMBL BM644784             [CCGCGGATGGATCCAAGCACGATGCTTACCATATTTCAAACCATTGCTAGATGAATAGTTCTACCCATTTTAAAGCCCATACGAGGGGGGAGACGAGAAGATTTTTTCATTTTATTCCAAGGGTGTATTAAAGATATTGAGTGTGTGCACAAAGCAGGAAGGAAAACAGGAAGCAAACAAACACAACAAAATGTATGCATTGTGAGATCTTGATAGTGTGAATTAAGGAAATTATAAAACAAACTGAACAAACAGAACAAAACACTCGATAAATCTTTCAGCACGAGTGTGTACAAGAAAGCGACGAAATCAACTAACGACTAGAAAGCTCCACACGGGTGAAAAATGCTGCCAAAGAAAACTCTGCACGATATAACACGTTTTCCACTCGAACGGGGAAAAGTGCGATAAGAGATGACATGCTTAAACACACAAATAGAATTGGAAA]




>consensus_1377#1
CCGCGGATGGATCCAAGCACGATGCTTACCATATTTCAAACCATTGCTAGATGAATAGTT
CTACCCATTTTAAAGCCCATACGAGGGGGGAGACGAGAAGATTTTTTCATTTTATTCCAA
GGGTGTATTAAAGATATTGAGTGTGTGCACAAAGCAGGAAGGAAAACAGGAAGCAAACAA
ACACAACAAAATGTATGCATTGTGAGATCTTGATAGTGTGAATTAAGGAAATTATAAAAC
AAACTGAACAAACAGAACAAAACACTCGATAAATCTTTCAGCACGAGTGTGTACAAGAAA
GCGACGAAATCAACTAACGACTAGAAAGCTCCACACGGGTGAAAAATGCTGCCAAAGAAA
ACTCTGCACGATATAACACGTTTTCCACTCGAACGGGGAAAAGTGCGATAAGAGATGACA
TGCTTAAACACACAAATAGAATTGGAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1377#0      ------------------------------------------------------------
consensus_1377#1      CCGCGGATGGATCCAAGCACGATGCTTACCATATTTCAAACCATTGCTAGATGAATAGTT 60
                                                                                  

consensus_1377#0      ------------AAGCGGAGACGATAAAAAAGACGAGAAGATTTTTTCATTTTATTCCAC 48
consensus_1377#1      CTACCCATTTTAAAGCCCATACGAGGGGGGAGACGAGAAGATTTTTTCATTTTATTCCAA 120
                                  ****  * ****      ***************************** 

consensus_1377#0      GGGTGTATTAAAGATAGTGAGTGTGTGCACAAAGCAGGAAGGAAAACAGGAAGCAAACAA 108
consensus_1377#1      GGGTGTATTAAAGATATTGAGTGTGTGCACAAAGCAGGAAGGAAAACAGGAAGCAAACAA 180
                      **************** *******************************************

consensus_1377#0      ACACAACAAAATGTATGCATTGTGAGATCTTGATAGTGTGAATTAAGGAAATTAGAAAAC 168
consensus_1377#1      ACACAACAAAATGTATGCATTGTGAGATCTTGATAGTGTGAATTAAGGAAATTATAAAAC 240
                      ****************************************************** *****

consensus_1377#0      AAACAGAACAAACAGAACAAAACACTCGATAAATCTTTCAGCACGAGTGTGTAGAAGAAA 228
consensus_1377#1      AAACTGAACAAACAGAACAAAACACTCGATAAATCTTTCAGCACGAGTGTGTACAAGAAA 300
                      **** ************************************************ ******

consensus_1377#0      GCAACGAAATCAACTAACGACAAGAAAGCTCCACACGGGTGAAAAATGCTGCCAAAGAAA 288
consensus_1377#1      GCGACGAAATCAACTAACGACTAGAAAGCTCCACACGGGTGAAAAATGCTGCCAAAGAAA 360
                      ** ****************** **************************************

consensus_1377#0      ACTCTGCACGAGAGCAAATGAAAGGAGCAATTTCAGTGGATCGTTTTGTGATCGTACGAA 348
consensus_1377#1      ACTCTGCACGATA-----------------------TAACACGTTTTCCACTCGAACGGG 397
                      *********** *                       *    ******    *** ***  

consensus_1377#0      AACCAAT-CGAAAAGGGCAGAAAAGTCTATAAACATGCGTAGAATATTTTGAAAAGTATC 407
consensus_1377#1      GAAAAGTGCGATAAGAGATGACATGCTTAAACACACAAATAGAAT----TGGAAA----- 448
                       *  * * *** *** *  ** * *  ** * ***    ******    ** ***     

consensus_1377#0      TGAGATAGATTCAGGTAAAGGAGAAAAAGAGATACAGAAAGAGATACATATAGCAAAATG 467
consensus_1377#1      ------------------------------------------------------------
                                                                                  

consensus_1377#0      TAATAC 473
consensus_1377#1      ------