cluster # 1410

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Anopheles gambiae
cluster # 1410 cluster # 1410 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1410#0 length = 753 sequences # 1

consensus_1410#1 length = 413 sequences # 1

consensusID : consensus_1410#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 753
fasta sequence

                              [CCACGAATCGGCCGAGGATTGAAAAAAAAACACGTAAAAAAAATCCGAAGCAGCCGAGAGGGAACCAGGTTCCGTCGCAAAAACCACAGCAGAGTAATCTGACCCAACGAACGAACATATTAACCAGACATCGGAGGTCACGAAACACGGACGATAGTAGGGAAAACAGTTAACCAGCAACCGGCCAGCAACGGCGCACGAACGGTGGTGGAGGGTGGTGTTGGCGTTTGTGCCATTCCCGCAGAACTTGCCGGCTTTCGTTCCGGTTCCAGGGCGCCGTCGACATCAGCCCGTCGCCCGTCGGCGGGTACCGGTCCGTTGGGCTNGGCCTGGGTTGGGCTGGGTATAGGCGTTTCGGACCAGGATCGTAACAACTTTTTGGCCCGAATCCGGACCGAAGGCCAAGCGGTTGGGAGCCTTAAACGGGGTGCCAAGCTTGACGGGCCGTTGACAGGGCCGGCAACCGTTTCCAACTTGTGCANAAAAAACGCCAATTCCCGGGTTCAGTANCTGGCTCGGTTTGGCGCCGGGGATAACAGGTTGTAACGGAAGTTAAGGTTAGGACGTATGTACACGTGGGGCGAATGGGATGCACTTTGATGCGCGGCATGCAACAATGAGGCACAAAGCGGGGTGGATTGAACAAAAGGAAGAACCCGAAAAGGGGGGGTGATAGGCGGANACANATTATTGTAGCAATACAAGCTGAAACCAGAGAGACACAAAGGGTTCCCAAGTTGTCTACGTACTGGG]

[+] EMBL BX468841             [CCACGAATCGGCCGAGGATTGAAAAAAAAACACGTAAAAAAAATCCGAAGCAGCCGAGAGGGAACCAGGTTCCGTCGCAAAAACCACAGCAGAGTAATCTGACCCAACGAACGAACATATTAACCAGACATCGGAGGTCACGAAACACGGACGATAGTAGGGAAAACAGTTAACCAGCAACCGGCCAGCAACGGCGCACGAACGGTGGTGGAGGGTGGTGTTGGCGTTTGTGCCATTCCCGCAGAACTTGCCGGCTTTCGTTCCGGTTCCAGGGCGCCGTCGACATCAGCCCGTCGCCCGTCGGCGGGTACCGGTCCGTTGGGCTNGGCCTGGGTTGGGCTGGGTATAGGCGTTTCGGACCAGGATCGTAACAACTTTTTGGCCCGAATCCGGACCGAAGGCCAAGCGGTTGGGAGCCTTAAACGGGGTGCCAAGCTTGACGGGCCGTTGACAGGGCCGGCAACCGTTTCCAACTTGTGCANAAAAAACGCCAATTCCCGGGTTCAGTANCTGGCTCGGTTTGGCGCCGGGGATAACAGGTTGTAACGGAAGTTAAGGTTAGGACGTATGTACACGTGGGGCGAATGGGATGCACTTTGATGCGCGGCATGCAACAATGAGGCACAAAGCGGGGTGGATTGAACAAAAGGAAGAACCCGAAAAGGGGGGGTGATAGGCGGANACANATTATTGTAGCAATACAAGCTGAAACCAGAGAGACACAAAGGGTTCCCAAGTTGTCTACGTACTGGG]




>consensus_1410#0
CCACGAATCGGCCGAGGATTGAAAAAAAAACACGTAAAAAAAATCCGAAGCAGCCGAGAG
GGAACCAGGTTCCGTCGCAAAAACCACAGCAGAGTAATCTGACCCAACGAACGAACATAT
TAACCAGACATCGGAGGTCACGAAACACGGACGATAGTAGGGAAAACAGTTAACCAGCAA
CCGGCCAGCAACGGCGCACGAACGGTGGTGGAGGGTGGTGTTGGCGTTTGTGCCATTCCC
GCAGAACTTGCCGGCTTTCGTTCCGGTTCCAGGGCGCCGTCGACATCAGCCCGTCGCCCG
TCGGCGGGTACCGGTCCGTTGGGCTNGGCCTGGGTTGGGCTGGGTATAGGCGTTTCGGAC
CAGGATCGTAACAACTTTTTGGCCCGAATCCGGACCGAAGGCCAAGCGGTTGGGAGCCTT
AAACGGGGTGCCAAGCTTGACGGGCCGTTGACAGGGCCGGCAACCGTTTCCAACTTGTGC
ANAAAAAACGCCAATTCCCGGGTTCAGTANCTGGCTCGGTTTGGCGCCGGGGATAACAGG
TTGTAACGGAAGTTAAGGTTAGGACGTATGTACACGTGGGGCGAATGGGATGCACTTTGA
TGCGCGGCATGCAACAATGAGGCACAAAGCGGGGTGGATTGAACAAAAGGAAGAACCCGA
AAAGGGGGGGTGATAGGCGGANACANATTATTGTAGCAATACAAGCTGAAACCAGAGAGA
CACAAAGGGTTCCCAAGTTGTCTACGTACTGGG

consensusID : consensus_1410#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 413
fasta sequence

                              [CGGTTGAACGGAAGTGGTAACAAACTCACCATTCCCGTTCGGCAAAAAGGCCCTTGTGCTTACCTAATTGTGTGTTTCGATGAGTAGTAGGGAACAGTATGAAAAGGGAAAAGAAGAAACCGATTGAAAAAAGAAAACGTAAAAAATCCGAAGCAGCCGAGAGGGAACCTGGTTCCGTCGCCAAAACCACAGCAGAGTAATCTGACCCAACGAACGAACATATTAACAGACATCGGAGGTCACGAACACGGACGATAGTAGGGAAAACAGTAACAGCAACCGCCAGCAACGGCGCACGAACGGTGGTGGAGGTGGTGTTGGCGTTGTGCCATCCCGCAGAACTGCCGCTTCGTCCGTTCCAGGCGCCGTCGACATCAGCCCGTCGCCCGTCGGCGGTACCGTCGTGGCTGCGG]

[-] EMBL BM633241             [CGGTTGAACGGAAGTGGTAACAAACTCACCATTCCCGTTCGGCAAAAAGGCCCTTGTGCTTACCTAATTGTGTGTTTCGATGAGTAGTAGGGAACAGTATGAAAAGGGAAAAGAAGAAACCGATTGAAAAAAGAAAACGTAAAAAATCCGAAGCAGCCGAGAGGGAACCTGGTTCCGTCGCCAAAACCACAGCAGAGTAATCTGACCCAACGAACGAACATATTAACAGACATCGGAGGTCACGAACACGGACGATAGTAGGGAAAACAGTAACAGCAACCGCCAGCAACGGCGCACGAACGGTGGTGGAGGTGGTGTTGGCGTTGTGCCATCCCGCAGAACTGCCGCTTCGTCCGTTCCAGGCGCCGTCGACATCAGCCCGTCGCCCGTCGGCGGTACCGTCGTGGCTGCGG]




>consensus_1410#1
CGGTTGAACGGAAGTGGTAACAAACTCACCATTCCCGTTCGGCAAAAAGGCCCTTGTGCT
TACCTAATTGTGTGTTTCGATGAGTAGTAGGGAACAGTATGAAAAGGGAAAAGAAGAAAC
CGATTGAAAAAAGAAAACGTAAAAAATCCGAAGCAGCCGAGAGGGAACCTGGTTCCGTCG
CCAAAACCACAGCAGAGTAATCTGACCCAACGAACGAACATATTAACAGACATCGGAGGT
CACGAACACGGACGATAGTAGGGAAAACAGTAACAGCAACCGCCAGCAACGGCGCACGAA
CGGTGGTGGAGGTGGTGTTGGCGTTGTGCCATCCCGCAGAACTGCCGCTTCGTCCGTTCC
AGGCGCCGTCGACATCAGCCCGTCGCCCGTCGGCGGTACCGTCGTGGCTGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1410#0      ------------------------------------------------------------
consensus_1410#1      CGGTTGAACGGAAGTGGTAACAAACTCACCATTCCCGTTCGGCAAAAAGGCCCTTGTGCT 60
                                                                                  

consensus_1410#0      ---------------------------------------------CCACGAATCGGCCGA 15
consensus_1410#1      TACCTAATTGTGTGTTTCGATGAGTAGTAGGGAACAGTATGAAAAGGGAAAAGAAGAAAC 120
                                                                        **   *    

consensus_1410#0      GGATTGAAAAAAAAACACGTAAAAAAAATCCGAAGCAGCCGAGAGGGAACCAGGTTCCGT 75
consensus_1410#1      CGATTGAAAAAAGAAAACGTAAAAAA--TCCGAAGCAGCCGAGAGGGAACCTGGTTCCGT 178
                       *********** ** **********  *********************** ********

consensus_1410#0      CGCAAAAACCACAGCAGAGTAATCTGACCCAACGAACGAACATATTAACCAGACATCGGA 135
consensus_1410#1      CGCCAAAACCACAGCAGAGTAATCTGACCCAACGAACGAACATATTAAC-AGACATCGGA 237
                      *** ********************************************* **********

consensus_1410#0      GGTCACGAAACACGGACGATAGTAGGGAAAACAGTTAACCAGCAACCGGCCAGCAACGGC 195
consensus_1410#1      GGTCACGAA-CACGGACGATAGTAGGGAAAACAGT--AACAGCAACCG-CCAGCAACGGC 293
                      ********* *************************  * ********* ***********

consensus_1410#0      GCACGAACGGTGGTGGAGGGTGGTGTTGGCGTTTGTGCCATTCCCGCAGAACTTGCCGGC 255
consensus_1410#1      GCACGAACGGTGGTGGAGG-TGGTGTTGGCGTT-GTGCCAT-CCCGCAGAACT-GCCG-- 347
                      ******************* ************* ******* *********** ****  

consensus_1410#0      TTTCGTTCCGGTTCCAGGGCGCCGTCGACATCAGCCCGTCGCCCGTCGGCGGGTACCGGT 315
consensus_1410#1      CTTCGTCC--GTTCCAGG-CGCCGTCGACATCAGCCCGTCGCCCGTCGGCGG-TACCG-- 401
                       ***** *  ******** ********************************* *****  

consensus_1410#0      CCGTTGGGCTNGGCCTGGGTTGGGCTGGGTATAGGCGTTTCGGACCAGGATCGTAACAAC 375
consensus_1410#1      TCGT--GGCTGCGG---------------------------------------------- 413
                       ***  ****  *                                               

consensus_1410#0      TTTTTGGCCCGAATCCGGACCGAAGGCCAAGCGGTTGGGAGCCTTAAACGGGGTGCCAAG 435
consensus_1410#1      ------------------------------------------------------------
                                                                                  

consensus_1410#0      CTTGACGGGCCGTTGACAGGGCCGGCAACCGTTTCCAACTTGTGCANAAAAAACGCCAAT 495
consensus_1410#1      ------------------------------------------------------------
                                                                                  

consensus_1410#0      TCCCGGGTTCAGTANCTGGCTCGGTTTGGCGCCGGGGATAACAGGTTGTAACGGAAGTTA 555
consensus_1410#1      ------------------------------------------------------------
                                                                                  

consensus_1410#0      AGGTTAGGACGTATGTACACGTGGGGCGAATGGGATGCACTTTGATGCGCGGCATGCAAC 615
consensus_1410#1      ------------------------------------------------------------
                                                                                  

consensus_1410#0      AATGAGGCACAAAGCGGGGTGGATTGAACAAAAGGAAGAACCCGAAAAGGGGGGGTGATA 675
consensus_1410#1      ------------------------------------------------------------
                                                                                  

consensus_1410#0      GGCGGANACANATTATTGTAGCAATACAAGCTGAAACCAGAGAGACACAAAGGGTTCCCA 735
consensus_1410#1      ------------------------------------------------------------
                                                                                  

consensus_1410#0      AGTTGTCTACGTACTGGG 753
consensus_1410#1      ------------------