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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_145#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 734 fasta sequence
[GCAGATCCCCGCGGTTATGGATAAGGTCCACCAGAGCATGCTCCATATGGTGTNTCCCACTGGAATCAGTTCCCGCCCATGAACCCGCTGTGGCACTACGATCCTAGGTTTTGCCATCTTCATGCTACGGAATGATCTACGATGACCGGTAACGGTTGCGTGATGTACATCTTCACCAACACCAAGTCACTCCGAACCCCCTCCAACTTGCTGGTGGTCAATCTGGCGTACTCCGATTTCTTCATGATGTTCACGATGGGCCCGCCGATGGTGATCAACTGCTGGCACGAGACCTGGACCTTTGGGCCGTTCGCGTGCGAGCTGTACGCCATGCTGGGATCGCTGTTCGGCTGTGCCTCGATCTGGACCATGACGATTGATTGCCTTTGAACCGNTACAAGTCATCCGTGAAAGGGTACTCGCGCGGCAAGCCGATTAGACAACCAACCGGTGGCCCTGNTAGCNGCATTACTAGGGCCGTGTAGGGTGTACGCGCTGTANCTNGGGACTCTAGGGCCCCGCCTGNNCACAGACATGGGAACCGGATACGTTGCCCGGGCAGGGCAACCCATGAACACCGCACTTGAACGGGGAAAGCGGAACTAACCTGAACCCCCAGAAACGCTGGGCTTGGNNAACNCNGCTCCGCTCACNACTCAATCCCATACCTAATTGCCCCANNCCTNTCACCGCTGTTACCTGGCGCNCTGGNCCGGGCTCGCATTCGGACCCCA]
[+] EMBL AL692446 [GCAGATCCCCGCGGTTATGGATAAGGTCCACCAGAGCATGCTCCATATGGTGTNTCCCACTGGAATCAGTTCCCGCCCATGAACCCGCTGTGGCACTACGATCCTAGGTTTTGCCATCTTCATGCTACGGAATGATCTACGATGACCGGTAACGGTTGCGTGATGTACATCTTCACCAACACCAAGTCACTCCGAACCCCCTCCAACTTGCTGGTGGTCAATCTGGCGTACTCCGATTTCTTCATGATGTTCACGATGGGCCCGCCGATGGTGATCAACTGCTGGCACGAGACCTGGACCTTTGGGCCGTTCGCGTGCGAGCTGTACGCCATGCTGGGATCGCTGTTCGGCTGTGCCTCGATCTGGACCATGACGATTGATTGCCTTTGAACCGNTACAAGTCATCCGTGAAAGGGTACTCGCGCGGCAAGCCGATTAGACAACCAACCGGTGGCCCTGNTAGCNGCATTACTAGGGCCGTGTAGGGTGTACGCGCTGTANCTNGGGACTCTAGGGCCCCGCCTGNNCACAGACATGGGAACCGGATACGTTGCCCGGGCAGGGCAACCCATGAACACCGCACTTGAACGGGGAAAGCGGAACTAACCTGAACCCCCAGAAACGCTGGGCTTGGNNAACNCNGCTCCGCTCACNACTCAATCCCATACCTAATTGCCCCANNCCTNTCACCGCTGTTACCTGGCGCNCTGGNCCGGGCTCGCATTCGGACCCCA]
consensusID : consensus_145#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence
[CCGGCAACACGCATCCAGTCCCGTGTTGTGTGCGTCGTTGGAAGAGGAACAGGAAATCGAAAACAACCAAAAACAACACACACACAGAGTGCAATTGCAAGGCGAGGATCAGATAACAAAAACAGGTATAGTTTGTCGTTGAAGCTGGTACCCCCATTTGCGGACTTGCAGACTTCAGGTTGTAGAATGTTGTAGCCAGGAATGAGTGCAGAAAACCTGAAACGAAAAGGGAAAGTGATCGCACAGAAACCGGGAGTGATCCCGTGGTCGTGAGGCGGCGAGAAGATCAGCACGATCGCACGATCGAGTTTTGCAAACGGAAAACGGAGTGAAAGTGCCCGAGAGTGTGCTTGTGTGTGTGTGTGCATCGGTCGTTGCTTGGTGCCAGTTGTGATTTGAAGCTGTTTTGCCCTTATGTTTAGTGATTTAGTTGCTCCTTTAATTCTGGTTGTGACTCGTACTGTGGAAGTGTACTTTTAAGTTGAACTTTTCCTTTTATTTGTGACCATATTCTTATCGTGTCTGCTCGTTATGTTTTCCAGTTGAATAAGATACACCAGCAAAACCACTCAAATAAACACACACTCTCCAAAATGAACCCCGGTGGTA]
[+] EMBL BM632426 [CCGGCAACACGCATCCAGTCCCGTGTTGTGTGCGTCGTTGGAAGAGGAACAGGAAATCGAAAACAACCAAAAACAACACACACACAGAGTGCAATTGCAAGGCGAGGATCAGATAACAAAAACAGGTATAGTTTGTCGTTGAAGCTGGTACCCCCATTTGCGGACTTGCAGACTTCAGGTTGTAGAATGTTGTAGCCAGGAATGAGTGCAGAAAACCTGAAACGAAAAGGGAAAGTGATCGCACAGAAACCGGGAGTGATCCCGTGGTCGTGAGGCGGCGAGAAGATCAGCACGATCGCACGATCGAGTTTTGCAAACGGAAAACGGAGTGAAAGTGCCCGAGAGTGTGCTTGTGTGTGTGTGTGCATCGGTCGTTGCTTGGTGCCAGTTGTGATTTGAAGCTGTTTTGCCCTTATGTTTAGTGATTTAGTTGCTCCTTTAATTCTGGTTGTGACTCGTACTGTGGAAGTGTACTTTTAAGTTGAACTTTTCCTTTTATTTGTGACCATATTCTTATCGTGTCTGCTCGTTATGTTTTCCAGTTGAATAAGATACACCAGCAAAACCACTCAAATAAACACACACTCTCCAAAATGAACCCCGGTGGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_145#0 GCAGATCCCCGCGGTTATGGATAAGGTCCACCAGAGCATGCTCCATATGGTGTNTCCCAC 60
consensus_145#1 -----------------CCGGCAACACGCATCCA-----GTCCCGTGTTGTGTGCGTCGT 38
* ** ** * * ** * * **** *
consensus_145#0 TGGAATCAGTTCCCGCCCATGAACCCGCTGTGGCACTACGATCCTAGGTTTTGCCATCTT 120
consensus_145#1 TGGAAGAGGAACAGGAAATCGAAAACAACCAAAAACAACACACACACAGAGTGCAAT-TG 97
***** * * * *** * ** ** * * *** ** *
consensus_145#0 CATGCTACGGAATGATCTACGATGACCGGTAACGGTTGCGTGATGTACATCTTCACCAAC 180
consensus_145#1 CAAGGCGAGGATCAGATAACAAAAACAGGTATAGTTTGT--------CGTTGAAGCTGGT 149
** * *** ** * ** **** * *** * * *
consensus_145#0 ACCAAGTCACTCCGAACCCCCTCCAACTTGCTGGTGGTCAATCTGGCGTACTCCGATTTC 240
consensus_145#1 ACC---CCCATTTGCGGACTTGCAGACTTCAGGTTGTAGAATGTTGTAGCCAGGAATGAG 206
*** * * * * * **** * ** *** * * * **
consensus_145#0 TTCATGATGTTCACGATGGGCCCGCCGATGGTGATCAACTGCTGGCACGAGACCTGGACC 300
consensus_145#1 TGCAGAAAACCTGAAACGAAAAGG--GAAAGTGATCG--CACAGAAACCGGGAGTGATCC 262
* ** * * * * ** ****** * * ** * ** **
consensus_145#0 TTTGGGCCGTTCGCGTGCGAGCTGTACGCCATGCTGG---GATCG--CTGTTCGGCTGTG 355
consensus_145#1 CGTGG-TCGTGAGGCGGCGAGAAGATCAGCACGATCGCACGATCGAGTTTTGCAAACGGA 321
*** *** * ***** * * ** * * * ***** * * * *
consensus_145#0 CCTCGATCTGGACCATGACGATTGATTGCCTTTGAACCGNTACAAGTCATCCGTGAAAGG 415
consensus_145#1 AAACGGAGTGAAAGTGCCCGAGAGTGTGCTTGTGTGTGTGTGTGCATCGGTCGTTGCTTG 381
** ** * *** * *** * ** * ** *** *
consensus_145#0 GTACTCGC-GCGGC---AAGCCGATTAGACAAC-CAACCGGTGGCCCTGNTAGCNGCATT 470
consensus_145#1 GTGCCAGTTGTGATTTGAAGCTGTTTTGCCCTTATGTTTAGTGATTTAGTTGCTCCTTTA 441
** * * * * **** * ** * * *** * * *
consensus_145#0 ACTAGGGCCGTGTAGGGTGTACGCGCTGTANCTNGGGACTCTAGGGCCCCGCCTGNNCAC 530
consensus_145#1 ATTCTGGTTGTG------ACTCGTACTGTGGAAGTGTACTTTTAAGTTGAACTTTTCCTT 495
* * ** *** ** **** * *** * * * * *
consensus_145#0 AGACATGGGAACCGGATACGTTGCCCGGGCAGGGCAACCCATGAACACCGCACTTGAACG 590
consensus_145#1 TTATTTGTGA-CCATATTC-TTATCGTGTCTGCTCG--TTATGTTTTCC--AGTTGAATA 549
* ** ** ** ** * ** * * * * * *** ** * *****
consensus_145#0 GGGAAAGCGGAACTAACCTGAACCCCCAGAAACGCTGGGCTTGGNNAACNCNGCTCCGCT 650
consensus_145#1 AGATACACCAGCAAAACC---ACTCAAATAAACAC-ACACTCTCCAAAATGAACCCCGGT 605
* * * **** ** * * **** * ** ** * *** *
consensus_145#0 CACNACTCAATCCCATACCTAATTGCCCCANNCCTNTCACCGCTGTTACCTGGCGCNCTG 710
consensus_145#1 GGTA-------------------------------------------------------- 609
consensus_145#0 GNCCGGGCTCGCATTCGGACCCCA 734
consensus_145#1 ------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||