cluster # 1454

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Anopheles gambiae
cluster # 1454 cluster # 1454 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1454#0 length = 692 sequences # 1

consensus_1454#1 length = 657 sequences # 1

consensusID : consensus_1454#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence

                              [TACCCTCTTCACATGGGACGGTAGAACTACTGGTGCTACCTATCAACGCACACGGATAATGCCTTCTTTCTTATTAGATTTAACCAATCCGTTCAATTCAAACTACTTTTGGCCACAAGGAGGCATATGGTACGCGTATTAAAAAGAGGGAAAAACTTGTACGCAAGGATACTATGAATATTCGGGACTTTCTCTTCGTTTCCATCATGTTTGCGAGATGAAATGTACATATATAAATATTATAGCACGATCTTGTTGCGGAAAGCCGAAGTAAAACTGTGCAGATGGCACCAGGCCCCAATTTTCAAACACACTAAAAAGCAAAAGAAGGATGTCCGCAAGGAAGAGATTTGATTAGAGAAAGGTGTTATTTTCAACCTCAAATGATATGACCCTGTAGAGACGCTACATAACCTTCCTAATTGCTAGCATTCTGTGGTGCTGTGGCGTTAGTCCTCTGTTAATTGAATTATTCCGGATCAACTGAGTTCGATCTGTTCTGTCGGTTGACGCCAAGATCTGTGAACATGTTAGGCTGACCTTTAACTGATATATCTAATCACTTTCCGTTGCAGTATCGTAACACCAGAAGCAACACACACACACAGCACCCTTACTCCTATTACGTTTCTTTGTTAGCACTATTATTACTAATTCTGCAGGCGCGCGCGCGCGAAATACATTTTTGTAGG]

[+] EMBL BX624702             [TACCCTCTTCACATGGGACGGTAGAACTACTGGTGCTACCTATCAACGCACACGGATAATGCCTTCTTTCTTATTAGATTTAACCAATCCGTTCAATTCAAACTACTTTTGGCCACAAGGAGGCATATGGTACGCGTATTAAAAAGAGGGAAAAACTTGTACGCAAGGATACTATGAATATTCGGGACTTTCTCTTCGTTTCCATCATGTTTGCGAGATGAAATGTACATATATAAATATTATAGCACGATCTTGTTGCGGAAAGCCGAAGTAAAACTGTGCAGATGGCACCAGGCCCCAATTTTCAAACACACTAAAAAGCAAAAGAAGGATGTCCGCAAGGAAGAGATTTGATTAGAGAAAGGTGTTATTTTCAACCTCAAATGATATGACCCTGTAGAGACGCTACATAACCTTCCTAATTGCTAGCATTCTGTGGTGCTGTGGCGTTAGTCCTCTGTTAATTGAATTATTCCGGATCAACTGAGTTCGATCTGTTCTGTCGGTTGACGCCAAGATCTGTGAACATGTTAGGCTGACCTTTAACTGATATATCTAATCACTTTCCGTTGCAGTATCGTAACACCAGAAGCAACACACACACACAGCACCCTTACTCCTATTACGTTTCTTTGTTAGCACTATTATTACTAATTCTGCAGGCGCGCGCGCGCGAAATACATTTTTGTAGG]




>consensus_1454#0
TACCCTCTTCACATGGGACGGTAGAACTACTGGTGCTACCTATCAACGCACACGGATAAT
GCCTTCTTTCTTATTAGATTTAACCAATCCGTTCAATTCAAACTACTTTTGGCCACAAGG
AGGCATATGGTACGCGTATTAAAAAGAGGGAAAAACTTGTACGCAAGGATACTATGAATA
TTCGGGACTTTCTCTTCGTTTCCATCATGTTTGCGAGATGAAATGTACATATATAAATAT
TATAGCACGATCTTGTTGCGGAAAGCCGAAGTAAAACTGTGCAGATGGCACCAGGCCCCA
ATTTTCAAACACACTAAAAAGCAAAAGAAGGATGTCCGCAAGGAAGAGATTTGATTAGAG
AAAGGTGTTATTTTCAACCTCAAATGATATGACCCTGTAGAGACGCTACATAACCTTCCT
AATTGCTAGCATTCTGTGGTGCTGTGGCGTTAGTCCTCTGTTAATTGAATTATTCCGGAT
CAACTGAGTTCGATCTGTTCTGTCGGTTGACGCCAAGATCTGTGAACATGTTAGGCTGAC
CTTTAACTGATATATCTAATCACTTTCCGTTGCAGTATCGTAACACCAGAAGCAACACAC
ACACACAGCACCCTTACTCCTATTACGTTTCTTTGTTAGCACTATTATTACTAATTCTGC
AGGCGCGCGCGCGCGAAATACATTTTTGTAGG

consensusID : consensus_1454#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 657
fasta sequence

                              [ATCCCGAGGTTAATGTAGAATATTGTTTGTCTTGTTTTTNTTTTTCTTTCTTTTTTTCTGTTTCACTCCGTAGTCTTTTCTCTGGTGTGTGTGTGTGTTTTGTAAGCCAAGAGCAATAGTTTTGGTTACCTATTTTCCACTATTTGTCGATACTCACTGTTAGAGGGGTTTTTTGCTGGTATTTCAACACTTTTGCTCAATTTATGTTACGCTCTTCACATGGGACGGTAGAACTACTGGTGCTACCTACCAACGCCACACGGATAATGCCTTCTTTCTTATTAGATTTAACCAATCCATTCAATTCAAACTACTCTTGGCCACAAGGAGGCACATGGCGCGTTCATTAAAAATTGGGAAAATCAGTACGCAAGGATGCTATTTACATTCGGGGCTTTCTCTTCGTTTCCATCATGTTTGCGCAGATGCAAATGTACATATCATCACATCATTCATCAGCACGATCTTGTTGCGGCAAAGCCGAAGTAAAAACTGTGCAGATGGCCACCAGGCCCCAATTTTCAAACACACTAAAACAGCAANCACGACGGATGTCCGCAAGGGAAGAGGATTCTGACTTNNGCAGAAAGGTGTCACTTTTCAACTGCAAATGATATGACCCTGTAGAGACGCTACATAACCTTCCTAATTGCTAGC]

[+] EMBL AL692264             [ATCCCGAGGTTAATGTAGAATATTGTTTGTCTTGTTTTTNTTTTTCTTTCTTTTTTTCTGTTTCACTCCGTAGTCTTTTCTCTGGTGTGTGTGTGTGTTTTGTAAGCCAAGAGCAATAGTTTTGGTTACCTATTTTCCACTATTTGTCGATACTCACTGTTAGAGGGGTTTTTTGCTGGTATTTCAACACTTTTGCTCAATTTATGTTACGCTCTTCACATGGGACGGTAGAACTACTGGTGCTACCTACCAACGCCACACGGATAATGCCTTCTTTCTTATTAGATTTAACCAATCCATTCAATTCAAACTACTCTTGGCCACAAGGAGGCACATGGCGCGTTCATTAAAAATTGGGAAAATCAGTACGCAAGGATGCTATTTACATTCGGGGCTTTCTCTTCGTTTCCATCATGTTTGCGCAGATGCAAATGTACATATCATCACATCATTCATCAGCACGATCTTGTTGCGGCAAAGCCGAAGTAAAAACTGTGCAGATGGCCACCAGGCCCCAATTTTCAAACACACTAAAACAGCAANCACGACGGATGTCCGCAAGGGAAGAGGATTCTGACTTNNGCAGAAAGGTGTCACTTTTCAACTGCAAATGATATGACCCTGTAGAGACGCTACATAACCTTCCTAATTGCTAGC]




>consensus_1454#1
ATCCCGAGGTTAATGTAGAATATTGTTTGTCTTGTTTTTNTTTTTCTTTCTTTTTTTCTG
TTTCACTCCGTAGTCTTTTCTCTGGTGTGTGTGTGTGTTTTGTAAGCCAAGAGCAATAGT
TTTGGTTACCTATTTTCCACTATTTGTCGATACTCACTGTTAGAGGGGTTTTTTGCTGGT
ATTTCAACACTTTTGCTCAATTTATGTTACGCTCTTCACATGGGACGGTAGAACTACTGG
TGCTACCTACCAACGCCACACGGATAATGCCTTCTTTCTTATTAGATTTAACCAATCCAT
TCAATTCAAACTACTCTTGGCCACAAGGAGGCACATGGCGCGTTCATTAAAAATTGGGAA
AATCAGTACGCAAGGATGCTATTTACATTCGGGGCTTTCTCTTCGTTTCCATCATGTTTG
CGCAGATGCAAATGTACATATCATCACATCATTCATCAGCACGATCTTGTTGCGGCAAAG
CCGAAGTAAAAACTGTGCAGATGGCCACCAGGCCCCAATTTTCAAACACACTAAAACAGC
AANCACGACGGATGTCCGCAAGGGAAGAGGATTCTGACTTNNGCAGAAAGGTGTCACTTT
TCAACTGCAAATGATATGACCCTGTAGAGACGCTACATAACCTTCCTAATTGCTAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1454#0      ------------------------------------------------------------
consensus_1454#1      ATCCCGAGGTTAATGTAGAATATTGTTTGTCTTGTTTTTNTTTTTCTTTCTTTTTTTCTG 60
                                                                                  

consensus_1454#0      ------------------------------------------------------------
consensus_1454#1      TTTCACTCCGTAGTCTTTTCTCTGGTGTGTGTGTGTGTTTTGTAAGCCAAGAGCAATAGT 120
                                                                                  

consensus_1454#0      ------------------------------------------------------------
consensus_1454#1      TTTGGTTACCTATTTTCCACTATTTGTCGATACTCACTGTTAGAGGGGTTTTTTGCTGGT 180
                                                                                  

consensus_1454#0      ---------------------------TACCCTCTTCACATGGGACGGTAGAACTACTGG 33
consensus_1454#1      ATTTCAACACTTTTGCTCAATTTATGTTACGCTCTTCACATGGGACGGTAGAACTACTGG 240
                                                 *** *****************************

consensus_1454#0      TGCTACCTATCAACGC-ACACGGATAATGCCTTCTTTCTTATTAGATTTAACCAATCCGT 92
consensus_1454#1      TGCTACCTACCAACGCCACACGGATAATGCCTTCTTTCTTATTAGATTTAACCAATCCAT 300
                      ********* ****** ***************************************** *

consensus_1454#0      TCAATTCAAACTACTTTTGGCCACAAGGAGGCATATGGTACGCGTATTAAAAAGAGGGAA 152
consensus_1454#1      TCAATTCAAACTACTCTTGGCCACAAGGAGGCACATGGCGCGTTCATTAAAAATTGGGAA 360
                      *************** ***************** ****  **   ********  *****

consensus_1454#0      AAACTTGTACGCAAGGATACTATGAATATTCGGGACTTTCTCTTCGTTTCCATCATGTTT 212
consensus_1454#1      AATCA-GTACGCAAGGATGCTATTTACATTCGGGGCTTTCTCTTCGTTTCCATCATGTTT 419
                      ** *  ************ ****  * ******* *************************

consensus_1454#0      GCG-AGATG-AAATGTACATATATAAATATTAT-----AGCACGATCTTGTTGCGG-AAA 264
consensus_1454#1      GCGCAGATGCAAATGTACATATCATCACATCATTCATCAGCACGATCTTGTTGCGGCAAA 479
                      *** ***** ************    * ** **     ****************** ***

consensus_1454#0      GCCGAAGTAAAA-CTGTGCAGATGGC-ACCAGGCCCCAATTTTCAAACACACTAAAA-AG 321
consensus_1454#1      GCCGAAGTAAAAACTGTGCAGATGGCCACCAGGCCCCAATTTTCAAACACACTAAAACAG 539
                      ************ ************* ****************************** **

consensus_1454#0      CAAAA--GAAGGATGTCCGCAAGG-AAGAGA--TTTGATTAGAG---AAAGGTGTTA-TT 372
consensus_1454#1      CAANCACGACGGATGTCCGCAAGGGAAGAGGATTCTGACTTNNGCAGAAAGGTGTCACTT 599
                      ***    ** ************** *****   * *** *   *   ******** * **

consensus_1454#0      TTCAACCTCAAATGATATGACCCTGTAGAGACGCTACATAACCTTCCTAATTGCTAGCAT 432
consensus_1454#1      TTCAACTGCAAATGATATGACCCTGTAGAGACGCTACATAACCTTCCTAATTGCTAGC-- 657
                      ******  **************************************************  

consensus_1454#0      TCTGTGGTGCTGTGGCGTTAGTCCTCTGTTAATTGAATTATTCCGGATCAACTGAGTTCG 492
consensus_1454#1      ------------------------------------------------------------
                                                                                  

consensus_1454#0      ATCTGTTCTGTCGGTTGACGCCAAGATCTGTGAACATGTTAGGCTGACCTTTAACTGATA 552
consensus_1454#1      ------------------------------------------------------------
                                                                                  

consensus_1454#0      TATCTAATCACTTTCCGTTGCAGTATCGTAACACCAGAAGCAACACACACACACAGCACC 612
consensus_1454#1      ------------------------------------------------------------
                                                                                  

consensus_1454#0      CTTACTCCTATTACGTTTCTTTGTTAGCACTATTATTACTAATTCTGCAGGCGCGCGCGC 672
consensus_1454#1      ------------------------------------------------------------
                                                                                  

consensus_1454#0      GCGAAATACATTTTTGTAGG 692
consensus_1454#1      --------------------