cluster # 1456

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Anopheles gambiae
cluster # 1456 cluster # 1456 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1456#0 length = 651 sequences # 1

consensus_1456#1 length = 608 sequences # 1

consensusID : consensus_1456#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 651
fasta sequence

                              [CCGACGAGAGAACACACGCCCGTAGCGTGCGGCGTCCGTAGCGCGCATCTCGTGTATTGCGGGGAGCTTACGGACTGTGGGATTTTTTATTTTTTTTTTAGTTGTGTGTGGTGTCTGTCTCCTCCTGGGCACTCTAGTGTACCTTACTGTGTGCGGTGCGTGTGTGAGCGGATTGCACAGAAGCGAGCTTCAAGTGCGATCTTGCGGGGTGCGATTCTCGCTCGAAAGAGAGAGAGAGAGAGAGAGAGGGAGAGGCAAAAGGAAGAAAGAACGAAAAAATGGCAACCGTACAAGTGCGAACAACGCTGAACGCTGCTGTGCCCTTAGTAAAACCTAACCTTGGCGAAAAAGATCGGCTCGCCTTCCGTGTGCGCGTGTGTGTTTGCGCTCCGCTACGATTGCTGTACCGTTCTGCTACAGACCACGGTTGACAAAAGGATGTGTTTTAGTGAACGATGGAAACAGATAACAAACAAAAAAAACTGATCCAACAGTTAAGTGAATCACGGGTTGCGGCGACGACGTTACTAACTGCGATGGCGGCAGCGGCGACGGCGGCGGCGAAAAAGAACCGAATTCTAAAGATGGCGCAGCGAAGGATGGATAATGGAGCGCTCGATCCAGCAGCTGCGGGAAATGGCGAAAACGTGC]

[+] EMBL BM629903             [CCGACGAGAGAACACACGCCCGTAGCGTGCGGCGTCCGTAGCGCGCATCTCGTGTATTGCGGGGAGCTTACGGACTGTGGGATTTTTTATTTTTTTTTTAGTTGTGTGTGGTGTCTGTCTCCTCCTGGGCACTCTAGTGTACCTTACTGTGTGCGGTGCGTGTGTGAGCGGATTGCACAGAAGCGAGCTTCAAGTGCGATCTTGCGGGGTGCGATTCTCGCTCGAAAGAGAGAGAGAGAGAGAGAGAGGGAGAGGCAAAAGGAAGAAAGAACGAAAAAATGGCAACCGTACAAGTGCGAACAACGCTGAACGCTGCTGTGCCCTTAGTAAAACCTAACCTTGGCGAAAAAGATCGGCTCGCCTTCCGTGTGCGCGTGTGTGTTTGCGCTCCGCTACGATTGCTGTACCGTTCTGCTACAGACCACGGTTGACAAAAGGATGTGTTTTAGTGAACGATGGAAACAGATAACAAACAAAAAAAACTGATCCAACAGTTAAGTGAATCACGGGTTGCGGCGACGACGTTACTAACTGCGATGGCGGCAGCGGCGACGGCGGCGGCGAAAAAGAACCGAATTCTAAAGATGGCGCAGCGAAGGATGGATAATGGAGCGCTCGATCCAGCAGCTGCGGGAAATGGCGAAAACGTGC]




>consensus_1456#0
CCGACGAGAGAACACACGCCCGTAGCGTGCGGCGTCCGTAGCGCGCATCTCGTGTATTGC
GGGGAGCTTACGGACTGTGGGATTTTTTATTTTTTTTTTAGTTGTGTGTGGTGTCTGTCT
CCTCCTGGGCACTCTAGTGTACCTTACTGTGTGCGGTGCGTGTGTGAGCGGATTGCACAG
AAGCGAGCTTCAAGTGCGATCTTGCGGGGTGCGATTCTCGCTCGAAAGAGAGAGAGAGAG
AGAGAGAGGGAGAGGCAAAAGGAAGAAAGAACGAAAAAATGGCAACCGTACAAGTGCGAA
CAACGCTGAACGCTGCTGTGCCCTTAGTAAAACCTAACCTTGGCGAAAAAGATCGGCTCG
CCTTCCGTGTGCGCGTGTGTGTTTGCGCTCCGCTACGATTGCTGTACCGTTCTGCTACAG
ACCACGGTTGACAAAAGGATGTGTTTTAGTGAACGATGGAAACAGATAACAAACAAAAAA
AACTGATCCAACAGTTAAGTGAATCACGGGTTGCGGCGACGACGTTACTAACTGCGATGG
CGGCAGCGGCGACGGCGGCGGCGAAAAAGAACCGAATTCTAAAGATGGCGCAGCGAAGGA
TGGATAATGGAGCGCTCGATCCAGCAGCTGCGGGAAATGGCGAAAACGTGC

consensusID : consensus_1456#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence

                              [CCGAGCGTCTCGACGAGAGAACACACGCCCGTAGCGTGCGGCGTCCGTAGCGTGCATCTCGTGTATTGCGGGGAGCTTACGGACTGTGGGATTTTTTTTTTTTTTTTTAGTTGTGTGTGGTGTCTGGCTCCTCCTGGGCACTCTAGTGTACCTTACTGTGTGCGGTGCGTGTGTGAGCGGATTGCACAGAAGCGAGCTTCAAGTGCGATCTTGCGGGGTGCGATTCTCGCTCGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGGCAAAAGGAAGAAAGAACGAAAAAATGGCAACCGTACAAGTGCGAACAACGCTGAACGCTGCTGTGCCCTTAGTAAAACCTAACCTTGGCGAAAAAGATCGGCTCGCCTTCCGTGTGCGCGTGTGTGTTTGCGCTCCGCTACGATTGCTGCTACCGTTCTGCTACAGACCACGGTTGACAAAAGGATGTGTTTTAGTGAACGATGGAAACCGATAACAAAAAAAAAAAAAAACTGATCCAACAGTTAAGTGAATCACGGGTTGCGGGCGACGACGTTACTAAGTGCGATGGCGGCAGCGGCGACGGCGGCGGCGAAAAAGAAC]

[+] EMBL BM610101             [CCGAGCGTCTCGACGAGAGAACACACGCCCGTAGCGTGCGGCGTCCGTAGCGTGCATCTCGTGTATTGCGGGGAGCTTACGGACTGTGGGATTTTTTTTTTTTTTTTTAGTTGTGTGTGGTGTCTGGCTCCTCCTGGGCACTCTAGTGTACCTTACTGTGTGCGGTGCGTGTGTGAGCGGATTGCACAGAAGCGAGCTTCAAGTGCGATCTTGCGGGGTGCGATTCTCGCTCGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGGCAAAAGGAAGAAAGAACGAAAAAATGGCAACCGTACAAGTGCGAACAACGCTGAACGCTGCTGTGCCCTTAGTAAAACCTAACCTTGGCGAAAAAGATCGGCTCGCCTTCCGTGTGCGCGTGTGTGTTTGCGCTCCGCTACGATTGCTGCTACCGTTCTGCTACAGACCACGGTTGACAAAAGGATGTGTTTTAGTGAACGATGGAAACCGATAACAAAAAAAAAAAAAAACTGATCCAACAGTTAAGTGAATCACGGGTTGCGGGCGACGACGTTACTAAGTGCGATGGCGGCAGCGGCGACGGCGGCGGCGAAAAAGAAC]




>consensus_1456#1
CCGAGCGTCTCGACGAGAGAACACACGCCCGTAGCGTGCGGCGTCCGTAGCGTGCATCTC
GTGTATTGCGGGGAGCTTACGGACTGTGGGATTTTTTTTTTTTTTTTTAGTTGTGTGTGG
TGTCTGGCTCCTCCTGGGCACTCTAGTGTACCTTACTGTGTGCGGTGCGTGTGTGAGCGG
ATTGCACAGAAGCGAGCTTCAAGTGCGATCTTGCGGGGTGCGATTCTCGCTCGAAAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGGCAAAAGGAAGAAAG
AACGAAAAAATGGCAACCGTACAAGTGCGAACAACGCTGAACGCTGCTGTGCCCTTAGTA
AAACCTAACCTTGGCGAAAAAGATCGGCTCGCCTTCCGTGTGCGCGTGTGTGTTTGCGCT
CCGCTACGATTGCTGCTACCGTTCTGCTACAGACCACGGTTGACAAAAGGATGTGTTTTA
GTGAACGATGGAAACCGATAACAAAAAAAAAAAAAAACTGATCCAACAGTTAAGTGAATC
ACGGGTTGCGGGCGACGACGTTACTAAGTGCGATGGCGGCAGCGGCGACGGCGGCGGCGA
AAAAGAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1456#0      ---------CCGACGAGAGAACACACGCCCGTAGCGTGCGGCGTCCGTAGCGCGCATCTC 51
consensus_1456#1      CCGAGCGTCTCGACGAGAGAACACACGCCCGTAGCGTGCGGCGTCCGTAGCGTGCATCTC 60
                                ****************************************** *******

consensus_1456#0      GTGTATTGCGGGGAGCTTACGGACTGTGGGATTTTTTATTTTTTTTTTAGTTGTGTGTGG 111
consensus_1456#1      GTGTATTGCGGGGAGCTTACGGACTGTGGGATTTTTTTTTTTTTTTTTAGTTGTGTGTGG 120
                      ************************************* **********************

consensus_1456#0      TGTCTGTCTCCTCCTGGGCACTCTAGTGTACCTTACTGTGTGCGGTGCGTGTGTGAGCGG 171
consensus_1456#1      TGTCTGGCTCCTCCTGGGCACTCTAGTGTACCTTACTGTGTGCGGTGCGTGTGTGAGCGG 180
                      ****** *****************************************************

consensus_1456#0      ATTGCACAGAAGCGAGCTTCAAGTGCGATCTTGCGGGGTGCGATTCTCGCTCGAAAGAGA 231
consensus_1456#1      ATTGCACAGAAGCGAGCTTCAAGTGCGATCTTGCGGGGTGCGATTCTCGCTCGAAAGAGA 240
                      ************************************************************

consensus_1456#0      GAGAGAGAGAGAGAGAG----------------------GGAGAGGCAAAAGGAAGAAAG 269
consensus_1456#1      GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGGCAAAAGGAAGAAAG 300
                      *****************                      *********************

consensus_1456#0      AACGAAAAAATGGCAACCGTACAAGTGCGAACAACGCTGAACGCTGCTGTGCCCTTAGTA 329
consensus_1456#1      AACGAAAAAATGGCAACCGTACAAGTGCGAACAACGCTGAACGCTGCTGTGCCCTTAGTA 360
                      ************************************************************

consensus_1456#0      AAACCTAACCTTGGCGAAAAAGATCGGCTCGCCTTCCGTGTGCGCGTGTGTGTTTGCGCT 389
consensus_1456#1      AAACCTAACCTTGGCGAAAAAGATCGGCTCGCCTTCCGTGTGCGCGTGTGTGTTTGCGCT 420
                      ************************************************************

consensus_1456#0      CCGCTACGATTGCTG-TACCGTTCTGCTACAGACCACGGTTGACAAAAGGATGTGTTTTA 448
consensus_1456#1      CCGCTACGATTGCTGCTACCGTTCTGCTACAGACCACGGTTGACAAAAGGATGTGTTTTA 480
                      *************** ********************************************

consensus_1456#0      GTGAACGATGGAAACAGATAACAAACAAAAAAAA---CTGATCCAACAGTTAAGTGAATC 505
consensus_1456#1      GTGAACGATGGAAACCGATAACAAAAAAAAAAAAAAACTGATCCAACAGTTAAGTGAATC 540
                      *************** ********* ********   ***********************

consensus_1456#0      ACGGGTTGCGG-CGACGACGTTACTAACTGCGATGGCGGCAGCGGCGACGGCGGCGGCGA 564
consensus_1456#1      ACGGGTTGCGGGCGACGACGTTACTAAGTGCGATGGCGGCAGCGGCGACGGCGGCGGCGA 600
                      *********** *************** ********************************

consensus_1456#0      AAAAGAACCGAATTCTAAAGATGGCGCAGCGAAGGATGGATAATGGAGCGCTCGATCCAG 624
consensus_1456#1      AAAAGAAC---------------------------------------------------- 608
                      ********                                                    

consensus_1456#0      CAGCTGCGGGAAATGGCGAAAACGTGC 651
consensus_1456#1      ---------------------------