cluster # 1458

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Anopheles gambiae
cluster # 1458 cluster # 1458 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1458#0 length = 809 sequences # 1

consensus_1458#1 length = 632 sequences # 1

consensusID : consensus_1458#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 809
fasta sequence

                              [AGGCAGAATNCCGAGGTTATTGAGCGGATTATGACAAGGCGCAGCAACGAGATTCCAACCCGGGGAAAGCATCCAACGAGGAGACCGGTTGAGGGGATGTCCTATGACTTCCACCCCATTAAAAAAACGTCCTCGTTCCGCTAAATGTGTCTAAGCAATACGATTATGGNGGGCGATTAGCTCCATTCGTACTGTGGTTAACCACCGACTGTAAGCAGTGCGTGAGCTGCTTGCAACACTAACACACACACAACACATACAGAGCCAGTATTTGTGTATTTCCANCAAAAAAAAACAAACAAAATGCTGCCTTAAAACACATNCGCAGGGGGAAGGCCTGCAGGGCTACCTAAAGTGTTGCTTGCTATGCTTCATTAAATTACCAGCAGANAACTTATNTATTATTCCCAAACACACGCACACAGCCGCAAACACCACACAAAGACACCCCGGGTATAACCTCTTGGACACTTCATGGGNGCGGTGGTTTTACAACTNACTTACAAACCCTAAACAACNAAACTGGCTNNCCAACTTGGACCTTGAACGCANNNAAGCACACCCCCCNTTANCGCCACNGGTNCCTTNAACANCCGCCCCCATGTGTAGTAAACTTCCGCGCATTAAATAACNACGGAAAACACATTTTGGNACCNCGAGCCCCCGGNAAACGGAACANANATTTTCCCGCACACCCCCAAACACAACCACCNNTGGGCCCTANGAGCTTTCTGGCACACACCGTTGTACATTTCCATCAGCAACATANGNNTACAATTNAACCGACCACCAACCTNGNACGTCCATCA]

[+] EMBL AL692295             [AGGCAGAATNCCGAGGTTATTGAGCGGATTATGACAAGGCGCAGCAACGAGATTCCAACCCGGGGAAAGCATCCAACGAGGAGACCGGTTGAGGGGATGTCCTATGACTTCCACCCCATTAAAAAAACGTCCTCGTTCCGCTAAATGTGTCTAAGCAATACGATTATGGNGGGCGATTAGCTCCATTCGTACTGTGGTTAACCACCGACTGTAAGCAGTGCGTGAGCTGCTTGCAACACTAACACACACACAACACATACAGAGCCAGTATTTGTGTATTTCCANCAAAAAAAAACAAACAAAATGCTGCCTTAAAACACATNCGCAGGGGGAAGGCCTGCAGGGCTACCTAAAGTGTTGCTTGCTATGCTTCATTAAATTACCAGCAGANAACTTATNTATTATTCCCAAACACACGCACACAGCCGCAAACACCACACAAAGACACCCCGGGTATAACCTCTTGGACACTTCATGGGNGCGGTGGTTTTACAACTNACTTACAAACCCTAAACAACNAAACTGGCTNNCCAACTTGGACCTTGAACGCANNNAAGCACACCCCCCNTTANCGCCACNGGTNCCTTNAACANCCGCCCCCATGTGTAGTAAACTTCCGCGCATTAAATAACNACGGAAAACACATTTTGGNACCNCGAGCCCCCGGNAAACGGAACANANATTTTCCCGCACACCCCCAAACACAACCACCNNTGGGCCCTANGAGCTTTCTGGCACACACCGTTGTACATTTCCATCAGCAACATANGNNTACAATTNAACCGACCACCAACCTNGNACGTCCATCA]




>consensus_1458#0
AGGCAGAATNCCGAGGTTATTGAGCGGATTATGACAAGGCGCAGCAACGAGATTCCAACC
CGGGGAAAGCATCCAACGAGGAGACCGGTTGAGGGGATGTCCTATGACTTCCACCCCATT
AAAAAAACGTCCTCGTTCCGCTAAATGTGTCTAAGCAATACGATTATGGNGGGCGATTAG
CTCCATTCGTACTGTGGTTAACCACCGACTGTAAGCAGTGCGTGAGCTGCTTGCAACACT
AACACACACACAACACATACAGAGCCAGTATTTGTGTATTTCCANCAAAAAAAAACAAAC
AAAATGCTGCCTTAAAACACATNCGCAGGGGGAAGGCCTGCAGGGCTACCTAAAGTGTTG
CTTGCTATGCTTCATTAAATTACCAGCAGANAACTTATNTATTATTCCCAAACACACGCA
CACAGCCGCAAACACCACACAAAGACACCCCGGGTATAACCTCTTGGACACTTCATGGGN
GCGGTGGTTTTACAACTNACTTACAAACCCTAAACAACNAAACTGGCTNNCCAACTTGGA
CCTTGAACGCANNNAAGCACACCCCCCNTTANCGCCACNGGTNCCTTNAACANCCGCCCC
CATGTGTAGTAAACTTCCGCGCATTAAATAACNACGGAAAACACATTTTGGNACCNCGAG
CCCCCGGNAAACGGAACANANATTTTCCCGCACACCCCCAAACACAACCACCNNTGGGCC
CTANGAGCTTTCTGGCACACACCGTTGTACATTTCCATCAGCAACATANGNNTACAATTN
AACCGACCACCAACCTNGNACGTCCATCA

consensusID : consensus_1458#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 632
fasta sequence

                              [AGGCGCAAGCAAACGAGATTCCAACCCGGGGAAAGCATCCAACGCAGGAGACCGGTTGAGGGGATGTCCTATGACTTCCACCCCATTAAAAAAACGTCCTCGTTCCGCTAAATGTGTCTAAGCAATACGATTATGGGGGCGATTAGCTCCATTCGTACTGTGTTAACCACCGACTGTAAGCAGTGCGTGAGCTGCTTGCAACACTAACACACACACAACACATACAGAGCAGTATTTGTGTATTTAAAAAAAAAAAACAAACAAAATGCTGCTTAAAACACATCCGCAGGGGGAAGGCCTGCAGGGCTACCTAAAGTGTTGTTGCTATGTTCATTAAATTACAGCAGAAACTTATTTATTTTCCCAAAAAGCAAAGCGAAAACAAAAGCCCGTTACTTGAATTGGGTGTTAATATACACTACCACTGTACATGATGAGCAAACCTAGAGTCTAACCCTGTATCGTTTAAGAATTGAAGCGAGAATTCGAACAAAACTGCTAGTTGAACTTATTTTATGTATAAAAAATGATTATTTTGTTAGTTTCTTATTATTATTAATGNTATTATTATTATTATTAATGCGTTTCAATTGCGGCGCTATACTATGCATAGCGCGGCATACNCACACAAA]

[+] EMBL BX623949             [AGGCGCAAGCAAACGAGATTCCAACCCGGGGAAAGCATCCAACGCAGGAGACCGGTTGAGGGGATGTCCTATGACTTCCACCCCATTAAAAAAACGTCCTCGTTCCGCTAAATGTGTCTAAGCAATACGATTATGGGGGCGATTAGCTCCATTCGTACTGTGTTAACCACCGACTGTAAGCAGTGCGTGAGCTGCTTGCAACACTAACACACACACAACACATACAGAGCAGTATTTGTGTATTTAAAAAAAAAAAACAAACAAAATGCTGCTTAAAACACATCCGCAGGGGGAAGGCCTGCAGGGCTACCTAAAGTGTTGTTGCTATGTTCATTAAATTACAGCAGAAACTTATTTATTTTCCCAAAAAGCAAAGCGAAAACAAAAGCCCGTTACTTGAATTGGGTGTTAATATACACTACCACTGTACATGATGAGCAAACCTAGAGTCTAACCCTGTATCGTTTAAGAATTGAAGCGAGAATTCGAACAAAACTGCTAGTTGAACTTATTTTATGTATAAAAAATGATTATTTTGTTAGTTTCTTATTATTATTAATGNTATTATTATTATTATTAATGCGTTTCAATTGCGGCGCTATACTATGCATAGCGCGGCATACNCACACAAA]




>consensus_1458#1
AGGCGCAAGCAAACGAGATTCCAACCCGGGGAAAGCATCCAACGCAGGAGACCGGTTGAG
GGGATGTCCTATGACTTCCACCCCATTAAAAAAACGTCCTCGTTCCGCTAAATGTGTCTA
AGCAATACGATTATGGGGGCGATTAGCTCCATTCGTACTGTGTTAACCACCGACTGTAAG
CAGTGCGTGAGCTGCTTGCAACACTAACACACACACAACACATACAGAGCAGTATTTGTG
TATTTAAAAAAAAAAAACAAACAAAATGCTGCTTAAAACACATCCGCAGGGGGAAGGCCT
GCAGGGCTACCTAAAGTGTTGTTGCTATGTTCATTAAATTACAGCAGAAACTTATTTATT
TTCCCAAAAAGCAAAGCGAAAACAAAAGCCCGTTACTTGAATTGGGTGTTAATATACACT
ACCACTGTACATGATGAGCAAACCTAGAGTCTAACCCTGTATCGTTTAAGAATTGAAGCG
AGAATTCGAACAAAACTGCTAGTTGAACTTATTTTATGTATAAAAAATGATTATTTTGTT
AGTTTCTTATTATTATTAATGNTATTATTATTATTATTAATGCGTTTCAATTGCGGCGCT
ATACTATGCATAGCGCGGCATACNCACACAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1458#0      AGGCAGAATNCCGAGGTTATTGAGCGGATTATGACAAGGCGCAGC--AACGAGATTCCAA 58
consensus_1458#1      ------------------------------------AGGCGCAAGCAAACGAGATTCCAA 24
                                                          *******    *************

consensus_1458#0      CCCGGGGAAAGCATCCAACG-AGGAGACCGGTTGAGGGGATGTCCTATGACTTCCACCCC 117
consensus_1458#1      CCCGGGGAAAGCATCCAACGCAGGAGACCGGTTGAGGGGATGTCCTATGACTTCCACCCC 84
                      ******************** ***************************************

consensus_1458#0      ATTAAAAAAACGTCCTCGTTCCGCTAAATGTGTCTAAGCAATACGATTATGGNGGGCGAT 177
consensus_1458#1      ATTAAAAAAACGTCCTCGTTCCGCTAAATGTGTCTAAGCAATACGATTATGGGGG-CGAT 143
                      **************************************************** ** ****

consensus_1458#0      TAGCTCCATTCGTACTGTGGTTAACCACCGACTGTAAGCAGTGCGTGAGCTGCTTGCAAC 237
consensus_1458#1      TAGCTCCATTCGTACTGTG-TTAACCACCGACTGTAAGCAGTGCGTGAGCTGCTTGCAAC 202
                      ******************* ****************************************

consensus_1458#0      ACTAACACACACACAACACATACAGAGCCAGTATTTGTGTATTTCCANCAAAAAAAAACA 297
consensus_1458#1      ACTAACACACACACAACACATACAGAGC-AGTATTTGTGTATTT--AAAAAAAAAAAACA 259
                      **************************** ***************  *  ***********

consensus_1458#0      AACAAAATGCTGCCTTAAAACACATNCGCAGGGGGAAGGCCTGCAGGGCTACCTAAAGTG 357
consensus_1458#1      AACAAAATGCTGC-TTAAAACACATCCGCAGGGGGAAGGCCTGCAGGGCTACCTAAAGTG 318
                      ************* *********** **********************************

consensus_1458#0      TTGCTTGCTATGCTTCATTAAATTACCAGCAGANAACTTATNTATTATTCCCAAACACAC 417
consensus_1458#1      TTG-TTGCTATG-TTCATTAAATTAC-AGCAGAAA-CTTATTTATT-TTCCCAAAAAGCA 373
                      *** ******** ************* ****** * ***** **** ******** *   

consensus_1458#0      GCACACAGCCGCAAACACCACACAAAGACACCCCGGGTATAACCTCTTGGACACTTCATG 477
consensus_1458#1      AAGCGAAAACAAAAGCCCGTTACTTGAATTGGGTGTTAATATACACTACCACTGTACATG 433
                         *  *  *  ** * *   **    *      *   ***  * **   **  * ****

consensus_1458#0      GGNGCGGTGGTTTTACAACTNACTTACAAACCCTAAACAACNAAACTGGCTNNCCAACTT 537
consensus_1458#1      A-TGAGCAAACCTAGAGTCTAACCCTGTATCGTTTAAGAATTGAAGCGAGAATTCGAACA 492
                         * *      *     ** **     * *  * ** **   **  *      * *   

consensus_1458#0      GGACCTTGAACGCANNNAAGCACACCCCCCNTTANCGCCACNGGTNCCTTNAACANCCGC 597
consensus_1458#1      AAACTGCTAGTTGAACTTATTTTATGTATAAAAAATG--ATTATTTTGTTAGTTTCTTAT 550
                        **    *    *    *    *         *  *  *    *   **          

consensus_1458#0      CCCCATGTGTAGTAAACTTCCGCGCATTAAATAACNACGGAAAACACATTTTGGNACCNC 657
consensus_1458#1      TATTATTAATGNTATTATTATTATTATTAATGCGTTTCAATTGCGGCGCTATACTATGCA 610
                          **   *  **   **      *****       *        *  * *   *    

consensus_1458#0      GAGCCCCCGGNAAACGGAACANANATTTTCCCGCACACCCCCAAACACAACCACCNNTGG 717
consensus_1458#1      TAGCGC--GGCATACNCA-CACAAA----------------------------------- 632
                       *** *  ** * **  * ** * *                                   

consensus_1458#0      GCCCTANGAGCTTTCTGGCACACACCGTTGTACATTTCCATCAGCAACATANGNNTACAA 777
consensus_1458#1      ------------------------------------------------------------
                                                                                  

consensus_1458#0      TTNAACCGACCACCAACCTNGNACGTCCATCA 809
consensus_1458#1      --------------------------------