cluster # 1485

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Anopheles gambiae
cluster # 1485 cluster # 1485 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1485#0 length = 688 sequences # 1

consensus_1485#1 length = 527 sequences # 1

consensusID : consensus_1485#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 688
fasta sequence

                              [GACCCACGCGTCCGACGACTACATGCTGGGGCAGCTGAACAACTTTGGCCAGCCGGTGGGTGCCGCCGGCGAGGCGGTGGTGCCGGGCAACAATCTCAACACGTTCGGGGCACACCATCACCATGCGGCGGTGCAGCCACCGTTGCCACCGCACCGTCGGCAGGCGCTCGTCCACACGCCAACGTTCCTGGACGGTGACACCGCCAGCAGCCCGATCGATCCGATCTACTACAACATGAACTCTTCTTCGCCGTTGCTGCAGCAGCAAACCTCCTGGGGTGTGTCGACCTCCTCCCCGCAGGGTATGGGAGCTGTACCAGGCAGTGGCATCCATGCCGGACTGTCCAATCCCGTCTACCAGCACTCGACCACCAACCTGAACCACAGCCCGGAGCTGAACGAGGAGTATTACGGCACGAACGGACAGAATCGGCCACCGTCGGTACGGTCCAGCTACTCCAACTTTCACGGGACGCGCCCACTGAGCTCGTACCTGGGCGGTGGTGGTACTGGAGGAGTAGCCCAGCCGGGCGGTATCACCAATCGGGGCTACAACGTGTCACCGCCGGGACAGCATGGAGGGACCACCGCTGGCGGCGGACAGGTGGAGAACGTGTTCGCTAATCTGACGAGCGGCGGCGGCAACACCAACCACCAGCAGCAGTACGGGGGTATCACGGGCGGCAGT]

[+] EMBL BM649078             [GACCCACGCGTCCGACGACTACATGCTGGGGCAGCTGAACAACTTTGGCCAGCCGGTGGGTGCCGCCGGCGAGGCGGTGGTGCCGGGCAACAATCTCAACACGTTCGGGGCACACCATCACCATGCGGCGGTGCAGCCACCGTTGCCACCGCACCGTCGGCAGGCGCTCGTCCACACGCCAACGTTCCTGGACGGTGACACCGCCAGCAGCCCGATCGATCCGATCTACTACAACATGAACTCTTCTTCGCCGTTGCTGCAGCAGCAAACCTCCTGGGGTGTGTCGACCTCCTCCCCGCAGGGTATGGGAGCTGTACCAGGCAGTGGCATCCATGCCGGACTGTCCAATCCCGTCTACCAGCACTCGACCACCAACCTGAACCACAGCCCGGAGCTGAACGAGGAGTATTACGGCACGAACGGACAGAATCGGCCACCGTCGGTACGGTCCAGCTACTCCAACTTTCACGGGACGCGCCCACTGAGCTCGTACCTGGGCGGTGGTGGTACTGGAGGAGTAGCCCAGCCGGGCGGTATCACCAATCGGGGCTACAACGTGTCACCGCCGGGACAGCATGGAGGGACCACCGCTGGCGGCGGACAGGTGGAGAACGTGTTCGCTAATCTGACGAGCGGCGGCGGCAACACCAACCACCAGCAGCAGTACGGGGGTATCACGGGCGGCAGT]




>consensus_1485#0
GACCCACGCGTCCGACGACTACATGCTGGGGCAGCTGAACAACTTTGGCCAGCCGGTGGG
TGCCGCCGGCGAGGCGGTGGTGCCGGGCAACAATCTCAACACGTTCGGGGCACACCATCA
CCATGCGGCGGTGCAGCCACCGTTGCCACCGCACCGTCGGCAGGCGCTCGTCCACACGCC
AACGTTCCTGGACGGTGACACCGCCAGCAGCCCGATCGATCCGATCTACTACAACATGAA
CTCTTCTTCGCCGTTGCTGCAGCAGCAAACCTCCTGGGGTGTGTCGACCTCCTCCCCGCA
GGGTATGGGAGCTGTACCAGGCAGTGGCATCCATGCCGGACTGTCCAATCCCGTCTACCA
GCACTCGACCACCAACCTGAACCACAGCCCGGAGCTGAACGAGGAGTATTACGGCACGAA
CGGACAGAATCGGCCACCGTCGGTACGGTCCAGCTACTCCAACTTTCACGGGACGCGCCC
ACTGAGCTCGTACCTGGGCGGTGGTGGTACTGGAGGAGTAGCCCAGCCGGGCGGTATCAC
CAATCGGGGCTACAACGTGTCACCGCCGGGACAGCATGGAGGGACCACCGCTGGCGGCGG
ACAGGTGGAGAACGTGTTCGCTAATCTGACGAGCGGCGGCGGCAACACCAACCACCAGCA
GCAGTACGGGGGTATCACGGGCGGCAGT

consensusID : consensus_1485#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence

                              [TTCCCCGAGGTTTGTACTGGAGGAGTAGCCCAGCCGGGCGGTATCACCAATCGGGGCTACAACGTGTCACCTGCCGGGACAGCATGGAGGGACCACCGCTGGCGGCGGACAGGTGGAGAACGTGTTCGCTAATCTGACGAGCGGCGGCGGCAACACCAACCACCAGCAGCAGTACGGGGGTATCACGGGCGGCAGTGCCGGTGGTACGGATCCGATCGCCATCCCCCAGCTACCCCACGGCGGTCGGTTTCGCGCGAAAGTATACGGGCGATGCAGTTCCTCAACAGTGGGCCACGGCCTACAATCTTAACTATCACACGCCACCGNATTCGGAGACTACCATGTGATTNTGAAGGGTGGGAAATGTTGTACATACACACACACACACACACACACAGNCANACCAACGCGCACACAGGCACACTCACATGANCACACACGTTACTATNCAAANTCTTGGGTCTTGCACTAGGCGCCGNNACACNTACGGCCTCTCTACTCCCCCACCGGCCGCAGGCCTTNTCGAC]

[+] EMBL AL692406             [TTCCCCGAGGTTTGTACTGGAGGAGTAGCCCAGCCGGGCGGTATCACCAATCGGGGCTACAACGTGTCACCTGCCGGGACAGCATGGAGGGACCACCGCTGGCGGCGGACAGGTGGAGAACGTGTTCGCTAATCTGACGAGCGGCGGCGGCAACACCAACCACCAGCAGCAGTACGGGGGTATCACGGGCGGCAGTGCCGGTGGTACGGATCCGATCGCCATCCCCCAGCTACCCCACGGCGGTCGGTTTCGCGCGAAAGTATACGGGCGATGCAGTTCCTCAACAGTGGGCCACGGCCTACAATCTTAACTATCACACGCCACCGNATTCGGAGACTACCATGTGATTNTGAAGGGTGGGAAATGTTGTACATACACACACACACACACACACACAGNCANACCAACGCGCACACAGGCACACTCACATGANCACACACGTTACTATNCAAANTCTTGGGTCTTGCACTAGGCGCCGNNACACNTACGGCCTCTCTACTCCCCCACCGGCCGCAGGCCTTNTCGAC]




>consensus_1485#1
TTCCCCGAGGTTTGTACTGGAGGAGTAGCCCAGCCGGGCGGTATCACCAATCGGGGCTAC
AACGTGTCACCTGCCGGGACAGCATGGAGGGACCACCGCTGGCGGCGGACAGGTGGAGAA
CGTGTTCGCTAATCTGACGAGCGGCGGCGGCAACACCAACCACCAGCAGCAGTACGGGGG
TATCACGGGCGGCAGTGCCGGTGGTACGGATCCGATCGCCATCCCCCAGCTACCCCACGG
CGGTCGGTTTCGCGCGAAAGTATACGGGCGATGCAGTTCCTCAACAGTGGGCCACGGCCT
ACAATCTTAACTATCACACGCCACCGNATTCGGAGACTACCATGTGATTNTGAAGGGTGG
GAAATGTTGTACATACACACACACACACACACACACAGNCANACCAACGCGCACACAGGC
ACACTCACATGANCACACACGTTACTATNCAAANTCTTGGGTCTTGCACTAGGCGCCGNN
ACACNTACGGCCTCTCTACTCCCCCACCGGCCGCAGGCCTTNTCGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1485#0      GACCCACGCGTCCGACGACTACATGCTGGGGCAGCTGAACAACTTTGGCCAGCCGGTGGG 60
consensus_1485#1      ----------------------------------TTCCCCGAGGTTTGT--ACTGGAGGA 24
                                                         *   * *  ** *    * ** ** 

consensus_1485#0      TGCCGCCGGCGAGGCGGTGGTGCCGGGCAACAATCTCAACACGTTCGGGGCACACCATCA 120
consensus_1485#1      GTAGCCCAGCCGGGCGGTATCACCAATCGG-GGCTACAACGTGTC----ACCTGCCGGGA 79
                           ** **  ******    **   *        ****  **      *   **   *

consensus_1485#0      CCATGCGGCGGTGCAGCCACCGTTGCCACCGCACCGTCGGCAGGCGCTCGTCCACACGCC 180
consensus_1485#1      CAGCATGGAGG---GACCACCGCTGGCGGCGGACAGGTGGAGAACGTGT-TCGCTAATCT 135
                      *     ** **     ****** ** *  ** ** *  **    **    **   *  * 

consensus_1485#0      AACGTTCCTGGACGGTGACACCG-CCAGCAGCCCGATCGATCCGATCTACTACAACATGA 239
consensus_1485#1      GACGAGCGGCGGCGGCAACACCAACCACCAG--CAGCAGTACGGGGGTATCACGG-GCGG 192
                       ***  *   * ***  *****  *** ***  *    *  * *   **  **     * 

consensus_1485#0      ACTCTTCTTCGCCGTTGCTGCAGCAGCAAACCTCCTGGGGT---GTGTCGACCTCCTCCC 296
consensus_1485#1      CAGTGCCGGTGGTACGGATCCGATCGCCATCCCCCAGCTACCCCACGGCGGTCGGTTTCG 252
                            *   *     * * *    ** * ** ** *         * **  *   * * 

consensus_1485#0      CGC-AGGGTATGGGAGCTGTACCAGGCAGTGGCATCCATGCCGGACTGTCCAATCCCGTC 355
consensus_1485#1      CGCGAAAGTATACGGGCGATGCAGTTCCTCAACAGTGG-GCCACGGCCTACAATCTTAAC 311
                      *** *  ****  * **  * *    *     **     ***      * *****    *

consensus_1485#0      TACCAGCACTCGACCACCAACCTGAACCACAGCCCGGAGCTGAACGAGGAGTATTACGGC 415
consensus_1485#1      TATCA-CACGCCACCGNATTCGGAGACTACCATGTGATTNTGAAGGGTGGGAAATGTTGT 370
                      ** ** *** * ***     *    ** **     *    **** *  * * * *   * 

consensus_1485#0      ACGAACGGACAGAATCGGCCACCGTCGGTACGGTCCAGCTACTCCAACTTTCACG-GGAC 474
consensus_1485#1      ACATACACACACACACACACAC----------ACACAGNCANACCAACGCGCACACAGGC 420
                      **  **  *** *  *   ***             ***  *  *****   ***   * *

consensus_1485#0      GCGCCCAC-TGAGCTCGTACCTGGGCGGTGGTGGTACTGGAGGAGTAGCCCAGCCGGGCG 533
consensus_1485#1      ACACTCACATGANCACACACGTTA-CTATNCAAANTCTTGGGTCTTGCACTAGGCG--CC 477
                       * * *** *** * *  ** *   *  *       ** * *   *   * ** **  * 

consensus_1485#0      GTATCACCAATCGGGGCTACAACGTGTCACCGCCGGGACAGCATGGAGGGACCACCGCTG 593
consensus_1485#1      GNNACACNTACGGCCTCTCTACTCCCCCACCGGCCGCAGGCCTTNTCGAC---------- 527
                      *   ***  *  *   **  *      ***** * * *   * *   *            

consensus_1485#0      GCGGCGGACAGGTGGAGAACGTGTTCGCTAATCTGACGAGCGGCGGCGGCAACACCAACC 653
consensus_1485#1      ------------------------------------------------------------
                                                                                  

consensus_1485#0      ACCAGCAGCAGTACGGGGGTATCACGGGCGGCAGT 688
consensus_1485#1      -----------------------------------