cluster # 1486

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Anopheles gambiae
cluster # 1486 cluster # 1486 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1486#0 length = 1148 sequences # 1

consensus_1486#1 length = 494 sequences # 1

consensusID : consensus_1486#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1148
fasta sequence

                              [GGCAGAATTCCCGAGGTTTGGAGCATGGCGACGAACCCTATNGTTTATTGTTTTCCTGGTCTCCCGGGCCAAAAGGACAGCACAACTAACACACACGGTACCACACATACAGGCATATACCCACTATACGGCCATCACCGCATGCATCACCGGCTATACAAATGCTAACTGTGTAAGCGCTATAAATGGTAGAGCTGCGATCTAGGTAACACACCACCAGCGGGGATCAAACAAATCTGCGTTTTACAGCACACCGTATAGGAATGAAAGTGTTAAGTTTAAANCAATTACCTCTTTTCCANTTGGGCGAACAAAACCCGAAAAACACCAAAGCACCTACACNGCGATTGTTGTACCACGGTAATAACCACTAATTGANCCTGTTGAAATCCATAACTTTCACTAACGCTAAGAATTAGGGCAACCAGTTGCGACCAACATGGGTCCGGGCACGCATTGGGGCACCGACTTATATCCACCGCACNATNAGCCCGCNGCTAACCAACCTTAAATANCTCAGAACAGCNGGNGCGGCAAACATTGGTTCTACCATAATACATCAGGCNTATGGTTCACGCACTTAACCTTAAAGTTTAAGTTAACNCCCAGGCGCGATTCTTAACCGNCGTTTTGCGCACCCNCACTTACCTTCNTTACNACAGGGGGCCANGCNCTTCCTCACATACCCCTTTTTCGCCCCACGCACCAGGTTACAATATGGCACGCACGGGCGCANNAGCNCGCACANCGCCNGANGTTGGGTNTCCCAACAAAGCAACGNAANANCCCNCCCTTACGTTTCTGTACNCANCCCGCCCCCTTTCCGCTANCTTAAGGGCCTTCCANCCCCGGAAAATAAGNAAAAAACGCCCCCGGCCGCGGCACGGCGCATAACCCGACCACCGGCGGCGCGGGCGACCCCATAGGTATNGGGCACGCCGGCTACACACGACCGCACACGGCCTTACACCTTGCTCCGGAGTGGCTTAANNGGGTACCTTNCNGCCCCTCTACACACACCCNTCNTCACATCAAAACNAAACNAAACACCNACCGGGNCTNTACNAGCCAANCTTACNGAGNAANCCTTCCGCCCGGCAGGCACACACATANCCNAAGCCAGACCACCATACCCCACACCGCNNTTN]

[+] EMBL AL692411             [GGCAGAATTCCCGAGGTTTGGAGCATGGCGACGAACCCTATNGTTTATTGTTTTCCTGGTCTCCCGGGCCAAAAGGACAGCACAACTAACACACACGGTACCACACATACAGGCATATACCCACTATACGGCCATCACCGCATGCATCACCGGCTATACAAATGCTAACTGTGTAAGCGCTATAAATGGTAGAGCTGCGATCTAGGTAACACACCACCAGCGGGGATCAAACAAATCTGCGTTTTACAGCACACCGTATAGGAATGAAAGTGTTAAGTTTAAANCAATTACCTCTTTTCCANTTGGGCGAACAAAACCCGAAAAACACCAAAGCACCTACACNGCGATTGTTGTACCACGGTAATAACCACTAATTGANCCTGTTGAAATCCATAACTTTCACTAACGCTAAGAATTAGGGCAACCAGTTGCGACCAACATGGGTCCGGGCACGCATTGGGGCACCGACTTATATCCACCGCACNATNAGCCCGCNGCTAACCAACCTTAAATANCTCAGAACAGCNGGNGCGGCAAACATTGGTTCTACCATAATACATCAGGCNTATGGTTCACGCACTTAACCTTAAAGTTTAAGTTAACNCCCAGGCGCGATTCTTAACCGNCGTTTTGCGCACCCNCACTTACCTTCNTTACNACAGGGGGCCANGCNCTTCCTCACATACCCCTTTTTCGCCCCACGCACCAGGTTACAATATGGCACGCACGGGCGCANNAGCNCGCACANCGCCNGANGTTGGGTNTCCCAACAAAGCAACGNAANANCCCNCCCTTACGTTTCTGTACNCANCCCGCCCCCTTTCCGCTANCTTAAGGGCCTTCCANCCCCGGAAAATAAGNAAAAAACGCCCCCGGCCGCGGCACGGCGCATAACCCGACCACCGGCGGCGCGGGCGACCCCATAGGTATNGGGCACGCCGGCTACACACGACCGCACACGGCCTTACACCTTGCTCCGGAGTGGCTTAANNGGGTACCTTNCNGCCCCTCTACACACACCCNTCNTCACATCAAAACNAAACNAAACACCNACCGGGNCTNTACNAGCCAANCTTACNGAGNAANCCTTCCGCCCGGCAGGCACACACATANCCNAAGCCAGACCACCATACCCCACACCGCNNTTN]




>consensus_1486#0
GGCAGAATTCCCGAGGTTTGGAGCATGGCGACGAACCCTATNGTTTATTGTTTTCCTGGT
CTCCCGGGCCAAAAGGACAGCACAACTAACACACACGGTACCACACATACAGGCATATAC
CCACTATACGGCCATCACCGCATGCATCACCGGCTATACAAATGCTAACTGTGTAAGCGC
TATAAATGGTAGAGCTGCGATCTAGGTAACACACCACCAGCGGGGATCAAACAAATCTGC
GTTTTACAGCACACCGTATAGGAATGAAAGTGTTAAGTTTAAANCAATTACCTCTTTTCC
ANTTGGGCGAACAAAACCCGAAAAACACCAAAGCACCTACACNGCGATTGTTGTACCACG
GTAATAACCACTAATTGANCCTGTTGAAATCCATAACTTTCACTAACGCTAAGAATTAGG
GCAACCAGTTGCGACCAACATGGGTCCGGGCACGCATTGGGGCACCGACTTATATCCACC
GCACNATNAGCCCGCNGCTAACCAACCTTAAATANCTCAGAACAGCNGGNGCGGCAAACA
TTGGTTCTACCATAATACATCAGGCNTATGGTTCACGCACTTAACCTTAAAGTTTAAGTT
AACNCCCAGGCGCGATTCTTAACCGNCGTTTTGCGCACCCNCACTTACCTTCNTTACNAC
AGGGGGCCANGCNCTTCCTCACATACCCCTTTTTCGCCCCACGCACCAGGTTACAATATG
GCACGCACGGGCGCANNAGCNCGCACANCGCCNGANGTTGGGTNTCCCAACAAAGCAACG
NAANANCCCNCCCTTACGTTTCTGTACNCANCCCGCCCCCTTTCCGCTANCTTAAGGGCC
TTCCANCCCCGGAAAATAAGNAAAAAACGCCCCCGGCCGCGGCACGGCGCATAACCCGAC
CACCGGCGGCGCGGGCGACCCCATAGGTATNGGGCACGCCGGCTACACACGACCGCACAC
GGCCTTACACCTTGCTCCGGAGTGGCTTAANNGGGTACCTTNCNGCCCCTCTACACACAC
CCNTCNTCACATCAAAACNAAACNAAACACCNACCGGGNCTNTACNAGCCAANCTTACNG
AGNAANCCTTCCGCCCGGCAGGCACACACATANCCNAAGCCAGACCACCATACCCCACAC
CGCNNTTN

consensusID : consensus_1486#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence

                              [CATCAGGCATCATCCCACTTCGGCCATCACCGCATGCATCACCGGCTTCAAATGCTACCGTGTAAGCGCTATAAATGGTAGGCGCGATCTAGGTAACACACCACCAGCGGGGATCAAACAAATCGCGTTTTACAGCACACCGTATAGGAATGAAAGTGTTAAGTTTAAAAATTTCCTCTTTCCAATTGGCGAACAAAACCGAAACCCACACACCTCACGCGTGTGTACACGTTTACACTATGAACTGTTGAATCATACTTTCTAGCTAGATAGGCACAGTGCGACACTGGTCGGGCAGATGGGAAGATTATTCAGATTAGCCGCGTACACTATTTTTAACGGCGAATGTTTCTATTTTCTGTTACATACTACTACTACCAGCATCTACACTTCCCCCCTCTCTCAAGGCAGTTTTTATCCTTCCCACACGTTATTGTTGTTGCGATGCGAAAGCGATGTTCCAAACACGAACCCCTCTTTAAACGCCTCCTCTA]

[+] EMBL BX616135             [CATCAGGCATCATCCCACTTCGGCCATCACCGCATGCATCACCGGCTTCAAATGCTACCGTGTAAGCGCTATAAATGGTAGGCGCGATCTAGGTAACACACCACCAGCGGGGATCAAACAAATCGCGTTTTACAGCACACCGTATAGGAATGAAAGTGTTAAGTTTAAAAATTTCCTCTTTCCAATTGGCGAACAAAACCGAAACCCACACACCTCACGCGTGTGTACACGTTTACACTATGAACTGTTGAATCATACTTTCTAGCTAGATAGGCACAGTGCGACACTGGTCGGGCAGATGGGAAGATTATTCAGATTAGCCGCGTACACTATTTTTAACGGCGAATGTTTCTATTTTCTGTTACATACTACTACTACCAGCATCTACACTTCCCCCCTCTCTCAAGGCAGTTTTTATCCTTCCCACACGTTATTGTTGTTGCGATGCGAAAGCGATGTTCCAAACACGAACCCCTCTTTAAACGCCTCCTCTA]




>consensus_1486#1
CATCAGGCATCATCCCACTTCGGCCATCACCGCATGCATCACCGGCTTCAAATGCTACCG
TGTAAGCGCTATAAATGGTAGGCGCGATCTAGGTAACACACCACCAGCGGGGATCAAACA
AATCGCGTTTTACAGCACACCGTATAGGAATGAAAGTGTTAAGTTTAAAAATTTCCTCTT
TCCAATTGGCGAACAAAACCGAAACCCACACACCTCACGCGTGTGTACACGTTTACACTA
TGAACTGTTGAATCATACTTTCTAGCTAGATAGGCACAGTGCGACACTGGTCGGGCAGAT
GGGAAGATTATTCAGATTAGCCGCGTACACTATTTTTAACGGCGAATGTTTCTATTTTCT
GTTACATACTACTACTACCAGCATCTACACTTCCCCCCTCTCTCAAGGCAGTTTTTATCC
TTCCCACACGTTATTGTTGTTGCGATGCGAAAGCGATGTTCCAAACACGAACCCCTCTTT
AAACGCCTCCTCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1486#0      GGCAGAATTCCCGAGGTTTGGAGCATGGCGACGAACCCTATNGTTTATTGTTTTCCTGGT 60
consensus_1486#1      ------------------------------------------------------------
                                                                                  

consensus_1486#0      CTCCCGGGCCAAAAGGACAGCACAACTAACACACACGGTACCACACATACAGGCATATAC 120
consensus_1486#1      ---------------------------------------------CAT-CAGGCATCATC 14
                                                                   *** *******   *

consensus_1486#0      CCACTATACGGCCATCACCGCATGCATCACCGGCTATACAAATGCTAACTGTGTAAGCGC 180
consensus_1486#1      CCACT--TCGGCCATCACCGCATGCATCACCGGCTT--CAAATGCTA-CCGTGTAAGCGC 69
                      *****   ***************************   ********* * **********

consensus_1486#0      TATAAATGGTAGAGCTGCGATCTAGGTAACACACCACCAGCGGGGATCAAACAAATCTGC 240
consensus_1486#1      TATAAATGGTAGG--CGCGATCTAGGTAACACACCACCAGCGGGGATCAAACAAATC-GC 126
                      ************    ***************************************** **

consensus_1486#0      GTTTTACAGCACACCGTATAGGAATGAAAGTGTTAAGTTTAAANCAATTACCTCTTTTCC 300
consensus_1486#1      GTTTTACAGCACACCGTATAGGAATGAAAGTGTTAAGTTTAAAA--ATTTCCTCTTTCCA 184
                      *******************************************   *** ******* * 

consensus_1486#0      ANTTGGGCGAACAAAACCCGAAAAACACCAAAGCACCTACACNGCGATTGTTGTACCACG 360
consensus_1486#1      ATT--GGCGAACAAAACCGAAA-----CCCACACACCT----CACGCGTGT-GTAC-ACG 231
                      * *  *************  **     ** *  *****      **  *** **** ***

consensus_1486#0      GTAATAACCACTAATTGANCCTGTTGAAATCCATAACTTTCACTAACGCTAAGAATTAGG 420
consensus_1486#1      TTTA----CACTA--TGAAC-TGTTGAA--TCATACTTTCTA-----GCTAGATA----G 273
                       * *    *****  *** * *******   ****  **  *     ****   *    *

consensus_1486#0      GCAACCAGTTGCGACCAACATGGGTCCGGGCACGCATTGGGGCACCGACTTATATCCACC 480
consensus_1486#1      GCA--CAGTG-----CGACACTGGTC-GGGCAGA---TGGGAAGATTATTCAGATTAGCC 322
                      ***  ****      * ***  **** *****     ****      * * * **   **

consensus_1486#0      GCACNATNAGCCCGCNGCTAACCAACCTTAAATANCTCAGAACA-GCNGGNGCGGCAAAC 539
consensus_1486#1      GCGTACACTATTTTTAACGGCGAATGTTTCTATTTTCTGTTACATACTACTACTACCAGC 382
                      **               *     *   **  **        ***  *     *  * * *

consensus_1486#0      ATTGGTTCTACCATAATACATCAGGCNTATGGTTCACGCACTTAACCTTAAAGTTTAAGT 599
consensus_1486#1      ATCTACACTTCCCCCCTCTCTCAAGGCAGTTTTTATCCTTCCCACACGTTATTGTTGTTG 442
                      **     ** **    *   *** *    *  **  *   *  *  * * *   **    

consensus_1486#0      TAACNCCCAGGCGCGATTCTTAACCGNCGTTTTGCGCACCCNCACTTACCTTCNTTACNA 659
consensus_1486#1      CGATGCGAAAGCGATGTTCCAAAC--ACG---AACCCCTCTTTAAACGCCTCCTCTA--- 494
                        *  *  * ***   ***  ***   **     * *  *   *    *** *  **   

consensus_1486#0      CAGGGGGCCANGCNCTTCCTCACATACCCCTTTTTCGCCCCACGCACCAGGTTACAATAT 719
consensus_1486#1      ------------------------------------------------------------
                                                                                  

consensus_1486#0      GGCACGCACGGGCGCANNAGCNCGCACANCGCCNGANGTTGGGTNTCCCAACAAAGCAAC 779
consensus_1486#1      ------------------------------------------------------------
                                                                                  

consensus_1486#0      GNAANANCCCNCCCTTACGTTTCTGTACNCANCCCGCCCCCTTTCCGCTANCTTAAGGGC 839
consensus_1486#1      ------------------------------------------------------------
                                                                                  

consensus_1486#0      CTTCCANCCCCGGAAAATAAGNAAAAAACGCCCCCGGCCGCGGCACGGCGCATAACCCGA 899
consensus_1486#1      ------------------------------------------------------------
                                                                                  

consensus_1486#0      CCACCGGCGGCGCGGGCGACCCCATAGGTATNGGGCACGCCGGCTACACACGACCGCACA 959
consensus_1486#1      ------------------------------------------------------------
                                                                                  

consensus_1486#0      CGGCCTTACACCTTGCTCCGGAGTGGCTTAANNGGGTACCTTNCNGCCCCTCTACACACA 1019
consensus_1486#1      ------------------------------------------------------------
                                                                                  

consensus_1486#0      CCCNTCNTCACATCAAAACNAAACNAAACACCNACCGGGNCTNTACNAGCCAANCTTACN 1079
consensus_1486#1      ------------------------------------------------------------
                                                                                  

consensus_1486#0      GAGNAANCCTTCCGCCCGGCAGGCACACACATANCCNAAGCCAGACCACCATACCCCACA 1139
consensus_1486#1      ------------------------------------------------------------
                                                                                  

consensus_1486#0      CCGCNNTTN 1148
consensus_1486#1      ---------