cluster # 1488

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Anopheles gambiae
cluster # 1488 cluster # 1488 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1488#0 length = 603 sequences # 1

consensus_1488#1 length = 586 sequences # 1

consensusID : consensus_1488#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence

                              [CCGGTCGACCGAACGCTACATCCGGTACGGTACTTGGATGGAAACATCTTTTTTAACGAAAATTGGAAACCGCGCGAGTTGAACTGAAACGGAAGCCAAAGTGTAGAGCGCGTTTATCGCCGAACGGAAAAGGGGGAAAAAAAGACGTAGCGGCCGTAGCGGGTGGTGGGAGCTTGGGAAGGCAACGGGAAGCAGCAGCATCAATCTCTACCCCCTCCCCCCTGGTTTGGTGGGCCGAAAAGGGTGGACAGAAAGGCCGGAGCGCAGTGAGCGCCCTTTTCTTCCGCCGTGGTGCGTGGTTAGTGCGCGTGCGTGCGTGAGTGCGTGCCGTGTGTGTGTGTTCGCGCGCCCTTGTTCCGTGTGCTCGGGAGTGTGTGTGCGTGCGCGCTGTTTTCCGTGTGCTGCTGCGCCGTGCGTGTGTGGCGCCATTCCGACGTGCTTTCGCGAGCCGTACCAGTGTGAGTGTGTGCGGGGAGGTTTTTTTTGGTGTGTGCTTTCTCGGTTGTTTGGAAACGGCAGATAACGCCAACGCGAAGCGAACGGCGGCTGGCGGGCGGTGTGGAAGTGAAAGCGAAGGGTATGCGCGCGCGTTTTTCTGCCGTA]

[+] EMBL BM657425             [CCGGTCGACCGAACGCTACATCCGGTACGGTACTTGGATGGAAACATCTTTTTTAACGAAAATTGGAAACCGCGCGAGTTGAACTGAAACGGAAGCCAAAGTGTAGAGCGCGTTTATCGCCGAACGGAAAAGGGGGAAAAAAAGACGTAGCGGCCGTAGCGGGTGGTGGGAGCTTGGGAAGGCAACGGGAAGCAGCAGCATCAATCTCTACCCCCTCCCCCCTGGTTTGGTGGGCCGAAAAGGGTGGACAGAAAGGCCGGAGCGCAGTGAGCGCCCTTTTCTTCCGCCGTGGTGCGTGGTTAGTGCGCGTGCGTGCGTGAGTGCGTGCCGTGTGTGTGTGTTCGCGCGCCCTTGTTCCGTGTGCTCGGGAGTGTGTGTGCGTGCGCGCTGTTTTCCGTGTGCTGCTGCGCCGTGCGTGTGTGGCGCCATTCCGACGTGCTTTCGCGAGCCGTACCAGTGTGAGTGTGTGCGGGGAGGTTTTTTTTGGTGTGTGCTTTCTCGGTTGTTTGGAAACGGCAGATAACGCCAACGCGAAGCGAACGGCGGCTGGCGGGCGGTGTGGAAGTGAAAGCGAAGGGTATGCGCGCGCGTTTTTCTGCCGTA]




>consensus_1488#0
CCGGTCGACCGAACGCTACATCCGGTACGGTACTTGGATGGAAACATCTTTTTTAACGAA
AATTGGAAACCGCGCGAGTTGAACTGAAACGGAAGCCAAAGTGTAGAGCGCGTTTATCGC
CGAACGGAAAAGGGGGAAAAAAAGACGTAGCGGCCGTAGCGGGTGGTGGGAGCTTGGGAA
GGCAACGGGAAGCAGCAGCATCAATCTCTACCCCCTCCCCCCTGGTTTGGTGGGCCGAAA
AGGGTGGACAGAAAGGCCGGAGCGCAGTGAGCGCCCTTTTCTTCCGCCGTGGTGCGTGGT
TAGTGCGCGTGCGTGCGTGAGTGCGTGCCGTGTGTGTGTGTTCGCGCGCCCTTGTTCCGT
GTGCTCGGGAGTGTGTGTGCGTGCGCGCTGTTTTCCGTGTGCTGCTGCGCCGTGCGTGTG
TGGCGCCATTCCGACGTGCTTTCGCGAGCCGTACCAGTGTGAGTGTGTGCGGGGAGGTTT
TTTTTGGTGTGTGCTTTCTCGGTTGTTTGGAAACGGCAGATAACGCCAACGCGAAGCGAA
CGGCGGCTGGCGGGCGGTGTGGAAGTGAAAGCGAAGGGTATGCGCGCGCGTTTTTCTGCC
GTA

consensusID : consensus_1488#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence

                              [CCGCGGACGCGTGGGCGCGTTTATCGCCGAACGGCAAAAGGGGGAAAAAAAGACGTAGCGGCCGTAGCAGGTGGTGGCAACGGGAAGCAGCAGCATCAATCTCTCCCCCCCCCCCTGGTTTGGTGGACCCCGAAAAGGGTGGACAGAAAGGCCGGAGCGCAGTGAGCGCCCTTTTCTTCCGCCGTGGTGCGTGGTTAGTGCGCGTGCGTGCGTGAGTGCGTGCCGTGTGTGTGTGTGTGTGTGTTCGCGCGCCCTTGTTCCGTGTGCTCGCGAGTGTGTGTGCGTGCGTGCGCGCTGTTTTCCGTGTGCTGCTGCGCCGTGCGTGTGTGGCGCCATTCCGACGTGCTTTCGCGAGCCGTGCCAGTGTGTGTGAGTGTGTGCGGGGAGGTTTTTTTTTTGGTGTGTGCTTTCTCGGTTGTTTGGAAACGGCAGATAACGCCAACGCGAAGCGAACGGCGGCTGGCGGGCGGTGTGGAAGTGAAAGCGAAGGGTATGCGCGCGCGTTTTTCTGCCGTACCGTGGCTTTGTGGTTTGCTTGCCGCGTTGCATCCCTGCCTGGCGATGCTGTGTGCGTGAGTGTAATGTG]

[+] EMBL BM648679             [CCGCGGACGCGTGGGCGCGTTTATCGCCGAACGGCAAAAGGGGGAAAAAAAGACGTAGCGGCCGTAGCAGGTGGTGGCAACGGGAAGCAGCAGCATCAATCTCTCCCCCCCCCCCTGGTTTGGTGGACCCCGAAAAGGGTGGACAGAAAGGCCGGAGCGCAGTGAGCGCCCTTTTCTTCCGCCGTGGTGCGTGGTTAGTGCGCGTGCGTGCGTGAGTGCGTGCCGTGTGTGTGTGTGTGTGTGTTCGCGCGCCCTTGTTCCGTGTGCTCGCGAGTGTGTGTGCGTGCGTGCGCGCTGTTTTCCGTGTGCTGCTGCGCCGTGCGTGTGTGGCGCCATTCCGACGTGCTTTCGCGAGCCGTGCCAGTGTGTGTGAGTGTGTGCGGGGAGGTTTTTTTTTTGGTGTGTGCTTTCTCGGTTGTTTGGAAACGGCAGATAACGCCAACGCGAAGCGAACGGCGGCTGGCGGGCGGTGTGGAAGTGAAAGCGAAGGGTATGCGCGCGCGTTTTTCTGCCGTACCGTGGCTTTGTGGTTTGCTTGCCGCGTTGCATCCCTGCCTGGCGATGCTGTGTGCGTGAGTGTAATGTG]




>consensus_1488#1
CCGCGGACGCGTGGGCGCGTTTATCGCCGAACGGCAAAAGGGGGAAAAAAAGACGTAGCG
GCCGTAGCAGGTGGTGGCAACGGGAAGCAGCAGCATCAATCTCTCCCCCCCCCCCTGGTT
TGGTGGACCCCGAAAAGGGTGGACAGAAAGGCCGGAGCGCAGTGAGCGCCCTTTTCTTCC
GCCGTGGTGCGTGGTTAGTGCGCGTGCGTGCGTGAGTGCGTGCCGTGTGTGTGTGTGTGT
GTGTTCGCGCGCCCTTGTTCCGTGTGCTCGCGAGTGTGTGTGCGTGCGTGCGCGCTGTTT
TCCGTGTGCTGCTGCGCCGTGCGTGTGTGGCGCCATTCCGACGTGCTTTCGCGAGCCGTG
CCAGTGTGTGTGAGTGTGTGCGGGGAGGTTTTTTTTTTGGTGTGTGCTTTCTCGGTTGTT
TGGAAACGGCAGATAACGCCAACGCGAAGCGAACGGCGGCTGGCGGGCGGTGTGGAAGTG
AAAGCGAAGGGTATGCGCGCGCGTTTTTCTGCCGTACCGTGGCTTTGTGGTTTGCTTGCC
GCGTTGCATCCCTGCCTGGCGATGCTGTGTGCGTGAGTGTAATGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1488#0      CCGGTCGACCGAACGCTACATCCGGTACGGTACTTGGATGGAAACATCTTTTTTAACGAA 60
consensus_1488#1      ------------------------------------------------------------
                                                                                  

consensus_1488#0      AATTGGAAACCGCGCGAGTTGAACTGAAACGGAAGCCAAAGTGTAGAGCGCGTTTATCGC 120
consensus_1488#1      --------------------------------CCGCGGACGCGT-GGGCGCGTTTATCGC 27
                                                        **  * * ** * *************

consensus_1488#0      CGAACGG-AAAAGGGGGAAAAAAAGACGTAGCGGCCGTAGCGGGTGGTGGGAGCTTGGGA 179
consensus_1488#1      CGAACGGCAAAAGGGGGAAAAAAAGACGTAGCGGCCGTAGCAGGTGGTGG---------- 77
                      ******* ********************************* ********          

consensus_1488#0      AGGCAACGGGAAGCAGCAGCATCAATCTCTACCCCCTCCCCCCTGGTTTGGTGGGCC--G 237
consensus_1488#1      ---CAACGGGAAGCAGCAGCATCAATCTCT--CCCCCCCCCCCTGGTTTGGTGGACCCCG 132
                         ***************************  **** ***************** **  *

consensus_1488#0      AAAAGGGTGGACAGAAAGGCCGGAGCGCAGTGAGCGCCCTTTTCTTCCGCCGTGGTGCGT 297
consensus_1488#1      AAAAGGGTGGACAGAAAGGCCGGAGCGCAGTGAGCGCCCTTTTCTTCCGCCGTGGTGCGT 192
                      ************************************************************

consensus_1488#0      GGTTAGTGCGCGTGCGTGCGTGAGTGCGTGCCGTGTGTGTGTGT--------TCGCGCGC 349
consensus_1488#1      GGTTAGTGCGCGTGCGTGCGTGAGTGCGTGCCGTGTGTGTGTGTGTGTGTGTTCGCGCGC 252
                      ********************************************        ********

consensus_1488#0      CCTTGTTCCGTGTGCTCGGGAGTGTGTGTGCGTGCG----CGCTGTTTTCCGTGTGCTGC 405
consensus_1488#1      CCTTGTTCCGTGTGCTCGCGAGTGTGTGTGCGTGCGTGCGCGCTGTTTTCCGTGTGCTGC 312
                      ****************** *****************    ********************

consensus_1488#0      TGCGCCGTGCGTGTGTGGCGCCATTCCGACGTGCTTTCGCGAGCCGTACCAGTGTG---- 461
consensus_1488#1      TGCGCCGTGCGTGTGTGGCGCCATTCCGACGTGCTTTCGCGAGCCGTGCCAGTGTGTGTG 372
                      *********************************************** ********    

consensus_1488#0      AGTGTGTGCGGGGAGGTTTTTTTT--GGTGTGTGCTTTCTCGGTTGTTTGGAAACGGCAG 519
consensus_1488#1      AGTGTGTGCGGGGAGGTTTTTTTTTTGGTGTGTGCTTTCTCGGTTGTTTGGAAACGGCAG 432
                      ************************  **********************************

consensus_1488#0      ATAACGCCAACGCGAAGCGAACGGCGGCTGGCGGGCGGTGTGGAAGTGAAAGCGAAGGGT 579
consensus_1488#1      ATAACGCCAACGCGAAGCGAACGGCGGCTGGCGGGCGGTGTGGAAGTGAAAGCGAAGGGT 492
                      ************************************************************

consensus_1488#0      ATGCGCGCGCGTTTTTCTGCCGTA------------------------------------ 603
consensus_1488#1      ATGCGCGCGCGTTTTTCTGCCGTACCGTGGCTTTGTGGTTTGCTTGCCGCGTTGCATCCC 552
                      ************************                                    

consensus_1488#0      ----------------------------------
consensus_1488#1      TGCCTGGCGATGCTGTGTGCGTGAGTGTAATGTG 586