cluster # 1496

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Anopheles gambiae
cluster # 1496 cluster # 1496 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1496#0 length = 1115 sequences # 1

consensus_1496#1 length = 627 sequences # 1

consensusID : consensus_1496#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1115
fasta sequence

                              [AAGAATCCCCCCGAGGTTATGGTACGGCGATTGAGCATTTGAGGTGTGTGAGAATTTCGTCAACAGTCAACCTATCGACTGGTGGGGCCCTACTAGACACACTGCTCTATATTCTCTCTTTTCTTCCGCAAATCCAACCGTAGAGAGGGATTTATTTTACGTTTTGGATTGTATATTGGTTTCCCCTATTTGTTTTGGTCAATAACCCGGAATTATGGGCAACTAAAAAACCCGGGGCCGGATTTGGTTTAATTTCCATTTAAAGGGGAAATTTTTTAACTTTTGGTTCTTTAAATTGGCGGTTATTGGTTTTAATTAAATTAAGGCCTTAATTATTGCAATTTAACAAATTGGTTTTCCCGGAAAAAGAAATTAATTATGTGGCTGGTTTTAAATTCCAATTAACCTTTTTGGCCTTTATCCTTGGCCTTAAACTTCAATTTTTTATAACCCAACCTTTCCAAGTTAACCAAGGTTGGTTGGAATTCTTCCTTCTTCCGGCCTTCCGGGGGGCCTATGGAATTACACAGGTTTCCAAAACTTAAACAAATTGGCCAAGGCCAGGCTATATATTCTGGCCAACAAGGGTTCCGTTAAATATACTCTCTCCGGTTGGCACACCACGCGGCAACAACTTCCCTTCTTGCTTTCCCCNCCCCCCCAAGACCCTTCTCTAACGCAAGGCTTAACTTACGGCTTAAAACCAAAGGGGGGGTTCCAAATTGGAACCTACTCTACCACAACCCCAAACACCTGGGGGCAGCGNACTTGAACAACCCCGCTCGGGGCAACTGGCCTTGNGGCTNGCCGGTCTGCCGGGCCCNAAGAGGTCTTAACACCTTGNAACANCGCTAAAAGCCCAAGAGAANGCCCCAACGCTTTCTGGGAACAGGCCTTTTACACAACTTACGGGCTCTGGCGGCCCAAGCCGGCATTGCTTTGCAACCTTGCCGGCGCGGCACCTTGGAACGCAAAACAACAGCCCNGACACACACAACCAGTTTTTCAACTTCCCATCTAACCCGCGGCANCACACCTCCCCGGCTAACGNNGANCTCTTCACACCTTNCTCCCTTCACACCCCCTGGGCGACCGCCAACACTTGNCCACACCAA]

[+] EMBL AL692465             [AAGAATCCCCCCGAGGTTATGGTACGGCGATTGAGCATTTGAGGTGTGTGAGAATTTCGTCAACAGTCAACCTATCGACTGGTGGGGCCCTACTAGACACACTGCTCTATATTCTCTCTTTTCTTCCGCAAATCCAACCGTAGAGAGGGATTTATTTTACGTTTTGGATTGTATATTGGTTTCCCCTATTTGTTTTGGTCAATAACCCGGAATTATGGGCAACTAAAAAACCCGGGGCCGGATTTGGTTTAATTTCCATTTAAAGGGGAAATTTTTTAACTTTTGGTTCTTTAAATTGGCGGTTATTGGTTTTAATTAAATTAAGGCCTTAATTATTGCAATTTAACAAATTGGTTTTCCCGGAAAAAGAAATTAATTATGTGGCTGGTTTTAAATTCCAATTAACCTTTTTGGCCTTTATCCTTGGCCTTAAACTTCAATTTTTTATAACCCAACCTTTCCAAGTTAACCAAGGTTGGTTGGAATTCTTCCTTCTTCCGGCCTTCCGGGGGGCCTATGGAATTACACAGGTTTCCAAAACTTAAACAAATTGGCCAAGGCCAGGCTATATATTCTGGCCAACAAGGGTTCCGTTAAATATACTCTCTCCGGTTGGCACACCACGCGGCAACAACTTCCCTTCTTGCTTTCCCCNCCCCCCCAAGACCCTTCTCTAACGCAAGGCTTAACTTACGGCTTAAAACCAAAGGGGGGGTTCCAAATTGGAACCTACTCTACCACAACCCCAAACACCTGGGGGCAGCGNACTTGAACAACCCCGCTCGGGGCAACTGGCCTTGNGGCTNGCCGGTCTGCCGGGCCCNAAGAGGTCTTAACACCTTGNAACANCGCTAAAAGCCCAAGAGAANGCCCCAACGCTTTCTGGGAACAGGCCTTTTACACAACTTACGGGCTCTGGCGGCCCAAGCCGGCATTGCTTTGCAACCTTGCCGGCGCGGCACCTTGGAACGCAAAACAACAGCCCNGACACACACAACCAGTTTTTCAACTTCCCATCTAACCCGCGGCANCACACCTCCCCGGCTAACGNNGANCTCTTCACACCTTNCTCCCTTCACACCCCCTGGGCGACCGCCAACACTTGNCCACACCAA]




>consensus_1496#0
AAGAATCCCCCCGAGGTTATGGTACGGCGATTGAGCATTTGAGGTGTGTGAGAATTTCGT
CAACAGTCAACCTATCGACTGGTGGGGCCCTACTAGACACACTGCTCTATATTCTCTCTT
TTCTTCCGCAAATCCAACCGTAGAGAGGGATTTATTTTACGTTTTGGATTGTATATTGGT
TTCCCCTATTTGTTTTGGTCAATAACCCGGAATTATGGGCAACTAAAAAACCCGGGGCCG
GATTTGGTTTAATTTCCATTTAAAGGGGAAATTTTTTAACTTTTGGTTCTTTAAATTGGC
GGTTATTGGTTTTAATTAAATTAAGGCCTTAATTATTGCAATTTAACAAATTGGTTTTCC
CGGAAAAAGAAATTAATTATGTGGCTGGTTTTAAATTCCAATTAACCTTTTTGGCCTTTA
TCCTTGGCCTTAAACTTCAATTTTTTATAACCCAACCTTTCCAAGTTAACCAAGGTTGGT
TGGAATTCTTCCTTCTTCCGGCCTTCCGGGGGGCCTATGGAATTACACAGGTTTCCAAAA
CTTAAACAAATTGGCCAAGGCCAGGCTATATATTCTGGCCAACAAGGGTTCCGTTAAATA
TACTCTCTCCGGTTGGCACACCACGCGGCAACAACTTCCCTTCTTGCTTTCCCCNCCCCC
CCAAGACCCTTCTCTAACGCAAGGCTTAACTTACGGCTTAAAACCAAAGGGGGGGTTCCA
AATTGGAACCTACTCTACCACAACCCCAAACACCTGGGGGCAGCGNACTTGAACAACCCC
GCTCGGGGCAACTGGCCTTGNGGCTNGCCGGTCTGCCGGGCCCNAAGAGGTCTTAACACC
TTGNAACANCGCTAAAAGCCCAAGAGAANGCCCCAACGCTTTCTGGGAACAGGCCTTTTA
CACAACTTACGGGCTCTGGCGGCCCAAGCCGGCATTGCTTTGCAACCTTGCCGGCGCGGC
ACCTTGGAACGCAAAACAACAGCCCNGACACACACAACCAGTTTTTCAACTTCCCATCTA
ACCCGCGGCANCACACCTCCCCGGCTAACGNNGANCTCTTCACACCTTNCTCCCTTCACA
CCCCCTGGGCGACCGCCAACACTTGNCCACACCAA

consensusID : consensus_1496#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 627
fasta sequence

                              [CCGGCAGCACTTAACTACACCGTATGTGTGTGAATTACGTCTTCCAAGAAAGGGATACTCGATACCGCGCACAGGCACCGTCCAGGCAACGTTGCTCAATCCGCTGGGAACTGTGGTGCGGATGTTTGTCGTGCCGTACGATTTTCGAGATATGCCAGCTATGTCCACTACCTTCATACGGCAGCGCATACTCGCCTGTGACGATAGCAGCCTCAAGCTGCTCGGCAAAAACATCGAACAGCTCAGCAATGCCGAGCAAATGAAGTTGCTGCGTTATGCGATCCATTTGCGGTTTCAAACATCGCGATCTGGAAAACTGTCGCTTCACACAGACATCCGGCTGCTGATTTCCCGCCGCACCGACTGTGATACGGCCGCTGCCCATGCGAAAAATTTACTCGAGTCCCCGAACGAACTGAAAGTGGTTACCATCGTACCGGATAATCCCAAGTTTAGTTTACGTATTGATAAGCAGCAGTAGTGTGGCTTTAACAAACTCTCCTCTATCCCATGCGTGGTACGGCGATTGAGCATTCGAGGTGTGTGAGAATTTCGTCAACAGTCAACCTATCGACTGGGGGGGGGGGCCCTACTAGACACACTGCTCTATATTCTCTCTTTTCTTCC]

[+] EMBL BM575821             [CCGGCAGCACTTAACTACACCGTATGTGTGTGAATTACGTCTTCCAAGAAAGGGATACTCGATACCGCGCACAGGCACCGTCCAGGCAACGTTGCTCAATCCGCTGGGAACTGTGGTGCGGATGTTTGTCGTGCCGTACGATTTTCGAGATATGCCAGCTATGTCCACTACCTTCATACGGCAGCGCATACTCGCCTGTGACGATAGCAGCCTCAAGCTGCTCGGCAAAAACATCGAACAGCTCAGCAATGCCGAGCAAATGAAGTTGCTGCGTTATGCGATCCATTTGCGGTTTCAAACATCGCGATCTGGAAAACTGTCGCTTCACACAGACATCCGGCTGCTGATTTCCCGCCGCACCGACTGTGATACGGCCGCTGCCCATGCGAAAAATTTACTCGAGTCCCCGAACGAACTGAAAGTGGTTACCATCGTACCGGATAATCCCAAGTTTAGTTTACGTATTGATAAGCAGCAGTAGTGTGGCTTTAACAAACTCTCCTCTATCCCATGCGTGGTACGGCGATTGAGCATTCGAGGTGTGTGAGAATTTCGTCAACAGTCAACCTATCGACTGGGGGGGGGGGCCCTACTAGACACACTGCTCTATATTCTCTCTTTTCTTCC]




>consensus_1496#1
CCGGCAGCACTTAACTACACCGTATGTGTGTGAATTACGTCTTCCAAGAAAGGGATACTC
GATACCGCGCACAGGCACCGTCCAGGCAACGTTGCTCAATCCGCTGGGAACTGTGGTGCG
GATGTTTGTCGTGCCGTACGATTTTCGAGATATGCCAGCTATGTCCACTACCTTCATACG
GCAGCGCATACTCGCCTGTGACGATAGCAGCCTCAAGCTGCTCGGCAAAAACATCGAACA
GCTCAGCAATGCCGAGCAAATGAAGTTGCTGCGTTATGCGATCCATTTGCGGTTTCAAAC
ATCGCGATCTGGAAAACTGTCGCTTCACACAGACATCCGGCTGCTGATTTCCCGCCGCAC
CGACTGTGATACGGCCGCTGCCCATGCGAAAAATTTACTCGAGTCCCCGAACGAACTGAA
AGTGGTTACCATCGTACCGGATAATCCCAAGTTTAGTTTACGTATTGATAAGCAGCAGTA
GTGTGGCTTTAACAAACTCTCCTCTATCCCATGCGTGGTACGGCGATTGAGCATTCGAGG
TGTGTGAGAATTTCGTCAACAGTCAACCTATCGACTGGGGGGGGGGGCCCTACTAGACAC
ACTGCTCTATATTCTCTCTTTTCTTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1496#0      AAGAATCCCCCCGAGGTTATGGTACGGCGATTGAGCATTTGAGGTGTGTGAGAATTTCGT 60
consensus_1496#1      ------------------------------------------------------------
                                                                                  

consensus_1496#0      CAACAGTCAACCTATCGACTGGTGGGGCCCTACTAGACACACTGCTCTATATTCTCTCTT 120
consensus_1496#1      ------------------------------------------------------------
                                                                                  

consensus_1496#0      TTCTTCCGCAAATCCAACCGTAGAGAGGGATTTATTTTACGTTTTGGATTGTATATTGGT 180
consensus_1496#1      ------------------------------------------------------------
                                                                                  

consensus_1496#0      TTCCCCTATTTGTTTTGGTCAATAACCCGGAATTATGGGCAACTAAAAAACCCGGGGCCG 240
consensus_1496#1      ------------------------------------------------------------
                                                                                  

consensus_1496#0      GATTTGGTTTAATTTCCATTTAAAGGGGAAATTTTTTAACTTTTGGTTCTTTAAATTGGC 300
consensus_1496#1      ------------------------------------------------------------
                                                                                  

consensus_1496#0      GGTTATTGGTTTTAATTAAATTAAGGCCTTAATTATTGCAATTTAACAAATTGGTTTTCC 360
consensus_1496#1      ------------------------------------------------------------
                                                                                  

consensus_1496#0      CGGAAAAAGAAATTAATTATGTGGCTGGTTTTAAATTCCAATTAACCTTTTTGGCCTTTA 420
consensus_1496#1      ------------------------------------------------------------
                                                                                  

consensus_1496#0      TCCTTGGCCTTAAACTTCAATTTTTTATAACCCAACCTTTCCAAGTTAACCAAGGTTGGT 480
consensus_1496#1      -------------------------------CCGGCAGCACTTAACTACACCGTATGTGT 29
                                                     **  *    *  *  **  *    *  **

consensus_1496#0      TGGAATTCTTCCTTCTTCCGGCCTTCCGGGGGGC-CTATGGAATTACACAGGTTTCCAAA 539
consensus_1496#1      GTGAATTACGTCTTCCAAGAAAGGGATACTCGATACCGCGCACAGGCACCGTCCAGGCAA 89
                        *****    ****                *   *   * *    *** *       **

consensus_1496#0      ACTTAAACAAATTGGCCAAGGCCAGGCTATATATTCTGGCCAA--CAAGGGTTCCGTTAA 597
consensus_1496#1      CGTTGCTCAATCCGCTGGGAACTGTGGTGCGGATGTTTGTCGTGCCGTACGATTTTCGAG 149
                        **   ***   *       *   * *    **  * * *    *    * *     * 

consensus_1496#0      ATATACTCTCTCCGGTTGGCACAC-CACGCGGCAACAACTTCCCTTCTTGCTTTCCCCNC 656
consensus_1496#1      ATATGCCAGCTATGTCCACTACCTTCATACGGCAGCG-CATACTCGCCTGTGACGATAGC 208
                      **** *   **  *      **   **  ***** *  * * *   * **         *

consensus_1496#0      CCCCCCAAGACCCTTCTCTAACGCAAGGCTTAACTTA-CGGCTTAAAACCAAAGGGGGGG 715
consensus_1496#1      AGCCTCAAGCTGCTCGGCAAAAACATCGAACAGCTCAGCAATGCCGAGCAAATGAAGTTG 268
                        ** ****   **   * **  **  *   * ** * *       * * ** *  *  *

consensus_1496#0      TTCCAAATTGGAACCTACTCTACCACAACCCCAAACACCTGGGGGCAGCGNACTTGAACA 775
consensus_1496#1      CTGCGTTATGCGATCCATTT----GCGGTTTCAAACATCGCGATCTGGAAAACT---GTC 321
                       * *    **  * * * *      *     ****** *  *     *   ***      

consensus_1496#0      ACCCCGCTCGGGGCAACTGGCCTTGNGGCTNGCCGGTCTGCCGGGCCCNAAGAGGTCTTA 835
consensus_1496#1      GCTTCACACAGA-CATCCGGC-TGCTGATTTCCCGCCGCACCGACTGTGATACGGCCGCT 379
                       *  * * * *  ** * *** *   *  *  ***     ***      *   ** *   

consensus_1496#0      ACACCTTGNAACANC--GCTAAAAGCCCAAGAGAANGCCCCAACGCTTTCTGG-GAACAG 892
consensus_1496#1      GCCCATGCGAAAAATTTACTCGAGTCCCCGAACGAACTGAAAGTGGTTACCATCGTACCG 439
                       * * *   ** *     **  *  ***   *  *      *  * ** *    * ** *

consensus_1496#0      GCCTTTTACACAACT--TACGGGCTCTGGCGGCCCAAGCCGGCATTGCTTTG-CAACCTT 949
consensus_1496#1      GATAATCCCAAGTTTAGTTTACGTATTGATAAGCAGCAGTAGTGTGGCTTTAACAAACTC 499
                      *    *  **    *  *    *   **     *       *  * *****  *** ** 

consensus_1496#0      GCCGGCGCGGCAC-CTTGGAACGCAAAACAACAGCCCNGACACACACAACCAGTTTTTCA 1008
consensus_1496#1      TCCTCTATCCCATGCGTGGTACGGCGATTGAGCATTCG-AGGTGTGTGAGAATTTCGTCA 558
                       **       **  * *** ***   *   *     *  *        *  * **  ***

consensus_1496#0      ACTTCCCATCTAACCCGCGGCANCACACCTCCCCGGCTAACGNNGANCTCTTCACACCTT 1068
consensus_1496#1      ACAGTCAACCTA-TCGACTGGGGGGGGGGGCCCTACTAGACACACTGCTCTATATTCTCT 617
                      **   * * ***  *  * *          ***      **      ****  *  *  *

consensus_1496#0      NCTCCCTTCACACCCCCTGGGCGACCGCCAACACTTGNCCACACCAA 1115
consensus_1496#1      CTTTTCTTCC------------------------------------- 627
                        *  ****